Wall clock time and date at job start Tue Mar 31 2020 07:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35839 * 116.99656 * 2 1 4 4 C 1.38953 * 119.90120 * 359.97438 * 3 2 1 5 5 C 1.37844 * 120.19056 * 180.02562 * 4 3 2 6 6 C 1.39416 * 119.98268 * 0.02562 * 5 4 3 7 7 C 1.48181 * 120.09889 * 180.02562 * 6 5 4 8 8 C 1.39013 * 119.62517 * 359.97438 * 7 6 5 9 9 C 1.40799 * 118.75835 * 179.97438 * 8 7 6 10 10 C 1.41535 * 120.98289 * 179.97438 * 9 8 7 11 11 H 1.07993 * 120.00103 * 23.19295 * 10 9 8 12 12 C 1.40047 * 119.99838 * 203.18479 * 10 9 8 13 13 N 1.30737 * 119.99772 * 17.30406 * 12 10 9 14 14 Si 1.86799 * 120.00014 * 197.29388 * 12 10 9 15 15 H 1.48505 * 109.46665 * 60.00551 * 14 12 10 16 16 H 1.48497 * 109.47298 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47358 * 300.00817 * 14 12 10 18 18 C 1.41176 * 118.03433 * 359.97438 * 9 8 7 19 19 C 1.37693 * 119.09698 * 0.02562 * 18 9 8 20 20 N 1.31952 * 121.16455 * 359.73886 * 19 18 9 21 21 C 1.39911 * 119.80219 * 359.97438 * 6 5 4 22 22 O 1.35807 * 120.09332 * 180.02562 * 21 6 5 23 23 C 1.42900 * 116.99452 * 180.02562 * 22 21 6 24 24 C 1.38464 * 119.81024 * 0.27678 * 21 6 5 25 25 H 1.08999 * 109.47140 * 300.00271 * 1 2 3 26 26 H 1.08994 * 109.46646 * 60.01130 * 1 2 3 27 27 H 1.09001 * 109.46501 * 180.02562 * 1 2 3 28 28 H 1.08002 * 119.90685 * 0.04880 * 4 3 2 29 29 H 1.07999 * 120.00975 * 179.97438 * 5 4 3 30 30 H 1.08000 * 120.62286 * 359.97438 * 8 7 6 31 31 H 0.96997 * 119.99892 * 179.97438 * 13 12 10 32 32 H 1.08001 * 120.44964 * 179.97438 * 18 9 8 33 33 H 1.07997 * 119.41379 * 180.02562 * 19 18 9 34 34 H 1.09000 * 109.47261 * 299.99443 * 23 22 21 35 35 H 1.09004 * 109.46829 * 180.02562 * 23 22 21 36 36 H 1.08995 * 109.47682 * 60.00442 * 23 22 21 37 37 H 1.08001 * 119.99494 * 179.69315 * 24 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2868 2.3744 -0.0005 5 6 1.9063 3.6058 -0.0011 6 6 3.2982 3.6854 -0.0016 7 6 3.9668 5.0078 -0.0016 8 6 3.1985 6.1663 -0.0016 9 6 3.8528 7.4130 -0.0011 10 6 3.1170 8.6220 -0.0016 11 1 2.1016 8.6363 0.3660 12 6 3.7056 9.7998 -0.4786 13 7 4.7787 9.7393 -1.2230 14 14 2.9575 11.4573 -0.0515 15 1 2.9502 11.6317 1.4233 16 1 3.7622 12.5389 -0.6742 17 1 1.5652 11.5189 -0.5641 18 6 5.2646 7.4215 0.0000 19 6 5.9414 6.2224 -0.0001 20 7 5.2937 5.0728 0.0040 21 6 4.0618 2.5131 -0.0011 22 8 5.4180 2.5838 -0.0011 23 6 6.1321 1.3459 -0.0011 24 6 3.4308 1.2806 -0.0058 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5136 -0.8901 27 1 -0.3632 -1.0277 0.0005 28 1 0.2085 2.3142 -0.0002 29 1 1.3136 4.5086 -0.0019 30 1 2.1200 6.1111 -0.0020 31 1 5.1862 10.5550 -1.5537 32 1 5.8063 8.3558 0.0000 33 1 7.0213 6.2229 0.0012 34 1 5.8686 0.7745 0.8890 35 1 7.2038 1.5448 -0.0006 36 1 5.8687 0.7744 -0.8910 37 1 4.0173 0.3737 -0.0104 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239619607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:01 Heat of formation + Delta-G solvation = -17.887707 kcal Electronic energy + Delta-G solvation = -21488.442225 eV Core-core repulsion = 18196.445031 eV Total energy + Delta-G solvation = -3291.997194 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.20757 -38.74837 -38.00719 -36.09087 -34.07430 -31.40720 -30.71732 -29.96040 -28.33890 -27.07242 -26.68959 -25.78090 -22.91423 -22.00394 -20.81262 -20.42289 -18.46594 -17.46283 -16.45280 -15.91963 -15.76467 -15.61241 -15.17759 -15.10074 -14.70131 -14.22902 -14.09640 -13.47165 -13.19128 -12.78171 -12.74564 -12.46254 -12.21600 -12.08022 -11.73282 -11.44376 -11.25893 -11.22139 -11.17554 -10.83618 -10.62538 -10.35922 -10.27220 -9.77477 -9.38175 -8.48924 -8.11442 -7.98375 -7.80848 -6.90449 -6.76707 -4.55589 1.47271 1.73852 2.80304 2.95035 3.02903 3.05462 3.27792 3.30408 3.78081 3.86986 4.15156 4.74529 4.93991 5.10172 5.12326 5.18137 5.28005 5.33493 5.40495 5.41850 5.55879 5.72626 5.76838 5.81456 5.94562 6.17916 6.40488 6.50634 6.67436 6.75581 6.88351 6.93816 7.15924 7.18732 7.38549 7.47090 7.52378 7.87302 7.91601 8.15650 8.49236 8.77694 8.78765 9.70368 10.10114 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.022543 B = 0.004184 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.782207 B = 6690.273408 C = 7845.317158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.153 3.847 4 C -0.249 4.249 5 C -0.035 4.035 6 C -0.082 4.082 7 C 0.162 3.838 8 C -0.259 4.259 9 C 0.127 3.873 10 C -0.460 4.460 11 H 0.080 0.920 12 C 0.079 3.921 13 N -0.787 5.787 14 Si 0.911 3.089 15 H -0.263 1.263 16 H -0.278 1.278 17 H -0.265 1.265 18 C -0.212 4.212 19 C 0.085 3.915 20 N -0.537 5.537 21 C 0.189 3.811 22 O -0.256 6.256 23 C 0.019 3.981 24 C -0.254 4.254 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.095 0.905 28 H 0.126 0.874 29 H 0.137 0.863 30 H 0.102 0.898 31 H 0.283 0.717 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.048 0.952 35 H 0.096 0.904 36 H 0.048 0.952 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.391 -12.470 1.630 13.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.108 3.892 4 C -0.268 4.268 5 C -0.054 4.054 6 C -0.084 4.084 7 C 0.028 3.972 8 C -0.282 4.282 9 C 0.119 3.881 10 C -0.491 4.491 11 H 0.098 0.902 12 C -0.141 4.141 13 N -0.413 5.413 14 Si 0.735 3.265 15 H -0.187 1.187 16 H -0.202 1.202 17 H -0.189 1.189 18 C -0.234 4.234 19 C -0.068 4.068 20 N -0.251 5.251 21 C 0.141 3.859 22 O -0.166 6.166 23 C -0.077 4.077 24 C -0.273 4.273 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.144 0.856 29 H 0.155 0.845 30 H 0.120 0.880 31 H 0.094 0.906 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.477 -13.122 1.494 13.656 hybrid contribution -1.044 1.490 0.041 1.820 sum -4.521 -11.631 1.535 12.573 Atomic orbital electron populations 1.23011 0.78657 1.03416 1.01540 1.85995 1.21201 1.27439 1.88840 1.18662 0.91464 0.83836 0.95272 1.20942 0.99621 0.91956 1.14241 1.20904 0.92777 0.97330 0.94348 1.18192 0.91667 0.90726 1.07791 1.18914 0.89963 0.89908 0.98412 1.21812 0.98420 0.92622 1.15374 1.17719 0.92070 0.91948 0.86366 1.19537 1.00357 0.91990 1.37191 0.90189 1.25946 0.94304 1.01509 0.92300 1.69768 1.17778 1.31008 1.22711 0.86323 0.79930 0.80186 0.80053 1.18714 1.20244 1.18909 1.22278 0.95218 0.98142 1.07748 1.21991 0.98134 0.88513 0.98162 1.67474 1.08132 1.28772 1.20762 1.18806 0.83416 0.91787 0.91925 1.86636 1.13976 1.29401 1.86582 1.23072 0.97436 0.86676 1.00479 1.20262 0.92454 0.97328 1.17305 0.92637 0.92619 0.88655 0.85623 0.84518 0.88006 0.90602 0.85694 0.86254 0.93317 0.88557 0.93298 0.85043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.33 10.49 -19.23 -0.20 -4.53 16 3 C 0.15 2.37 6.69 -39.15 -0.26 2.10 16 4 C -0.25 -3.75 9.02 -39.46 -0.36 -4.11 16 5 C -0.03 -0.61 9.40 -39.29 -0.37 -0.98 16 6 C -0.08 -1.70 5.89 -104.75 -0.62 -2.32 16 7 C 0.16 3.94 6.73 -83.06 -0.56 3.38 16 8 C -0.26 -6.45 9.25 -38.33 -0.35 -6.80 16 9 C 0.13 3.39 5.61 -106.56 -0.60 2.80 16 10 C -0.46 -12.02 9.12 -37.65 -0.34 -12.36 16 11 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 12 C 0.08 1.94 5.20 -17.34 -0.09 1.85 16 13 N -0.79 -20.01 10.90 55.55 0.61 -19.40 16 14 Si 0.91 18.24 29.59 -169.99 -5.03 13.20 16 15 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 16 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 17 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 18 C -0.21 -5.55 8.80 -38.67 -0.34 -5.89 16 19 C 0.08 2.09 11.15 -17.70 -0.20 1.89 16 20 N -0.54 -13.42 8.10 -9.96 -0.08 -13.50 16 21 C 0.19 3.60 6.69 -38.87 -0.26 3.34 16 22 O -0.26 -4.88 8.31 -19.14 -0.16 -5.04 16 23 C 0.02 0.25 9.81 101.05 0.99 1.25 16 24 C -0.25 -4.14 8.96 -39.33 -0.35 -4.50 16 25 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 26 H 0.06 0.47 7.65 -51.93 -0.40 0.07 16 27 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.13 1.51 6.27 -52.49 -0.33 1.18 16 29 H 0.14 2.26 6.17 -52.49 -0.32 1.94 16 30 H 0.10 2.30 6.18 -52.49 -0.32 1.97 16 31 H 0.28 6.53 8.29 -40.82 -0.34 6.19 16 32 H 0.13 3.31 6.16 -52.49 -0.32 2.99 16 33 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 34 H 0.05 0.57 7.67 -51.93 -0.40 0.17 16 35 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.57 7.65 -51.93 -0.40 0.18 16 37 H 0.13 1.85 6.29 -52.49 -0.33 1.52 16 LS Contribution 313.06 15.07 4.72 4.72 Total: -1.00 -30.48 313.06 -6.90 -37.38 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -4.04 Total: 6.26 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -2.72 Total: -19.09 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.52 Total: -32.90 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.36 Total: -9.58 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.48 -6.90 -37.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239619607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.490 kcal (2) G-P(sol) polarization free energy of solvation -30.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds