Wall clock time and date at job start Tue Mar 31 2020 06:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35905 * 117.00222 * 2 1 4 4 C 1.38919 * 119.97640 * 0.02562 * 3 2 1 5 5 C 1.38293 * 120.25319 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.89786 * 179.97438 * 5 4 3 7 7 O 1.42895 * 109.47054 * 270.02125 * 6 5 4 8 8 C 1.37969 * 120.20771 * 359.97438 * 5 4 3 9 9 C 1.39688 * 119.95802 * 0.02562 * 8 5 4 10 10 C 1.47833 * 120.12615 * 180.02562 * 9 8 5 11 11 C 1.39668 * 120.64917 * 310.29529 * 10 9 8 12 12 C 1.38395 * 118.47694 * 180.26307 * 11 10 9 13 13 C 1.39062 * 119.72087 * 359.72381 * 12 11 10 14 14 N 1.31280 * 121.33654 * 359.97438 * 13 12 11 15 15 C 1.33699 * 121.64065 * 0.02562 * 14 13 12 16 16 C 1.40814 * 119.93792 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99665 * 171.22299 * 16 15 14 18 18 C 1.40149 * 120.00112 * 351.22565 * 16 15 14 19 19 N 1.30701 * 119.99797 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 120.00099 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47332 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.47242 * 299.99961 * 20 18 16 23 23 H 1.48504 * 109.47403 * 59.99948 * 20 18 16 24 24 C 1.38393 * 119.98461 * 180.30011 * 3 2 1 25 25 H 1.08999 * 109.47250 * 299.99390 * 1 2 3 26 26 H 1.08998 * 109.47430 * 59.99489 * 1 2 3 27 27 H 1.09001 * 109.47223 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.87709 * 0.03284 * 4 3 2 29 29 H 1.08994 * 109.46948 * 30.02286 * 6 5 4 30 30 H 1.09000 * 109.47010 * 150.02074 * 6 5 4 31 31 H 0.96705 * 114.00316 * 179.97438 * 7 6 5 32 32 H 1.08004 * 120.02236 * 180.02562 * 8 5 4 33 33 H 1.08007 * 120.76483 * 359.97438 * 11 10 9 34 34 H 1.07988 * 120.14045 * 179.70823 * 12 11 10 35 35 H 1.08000 * 119.32712 * 180.02562 * 13 12 11 36 36 H 0.97000 * 119.99768 * 355.11330 * 19 18 16 37 37 H 1.08002 * 120.10469 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2889 2.3757 0.0005 5 6 1.9109 3.6109 0.0000 6 6 1.0818 4.8693 0.0000 7 8 0.8188 5.2665 -1.3472 8 6 3.2880 3.6947 -0.0005 9 6 4.0578 2.5290 -0.0011 10 6 5.5336 2.6145 -0.0011 11 6 6.1995 3.4319 -0.9172 12 6 7.5823 3.4737 -0.8808 13 6 8.2705 2.7147 0.0595 14 7 7.6351 1.9541 0.9203 15 6 6.3006 1.8731 0.9333 16 6 5.6558 1.0460 1.8730 17 1 4.5819 1.0860 1.9804 18 6 6.4077 0.1712 2.6690 19 7 5.8091 -0.5968 3.5409 20 14 8.2652 0.1027 2.4838 21 1 8.8208 -0.8954 3.4325 22 1 8.6099 -0.2908 1.0939 23 1 8.8415 1.4396 2.7771 24 6 3.4280 1.2829 -0.0063 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 0.2105 2.3165 0.0015 29 1 0.1391 4.6833 0.5146 30 1 1.6255 5.6626 0.5131 31 1 0.2881 6.0712 -1.4236 32 1 3.7706 4.6609 -0.0005 33 1 5.6481 4.0143 -1.6406 34 1 8.1247 4.0929 -1.5798 35 1 9.3496 2.7524 0.0825 36 1 4.8541 -0.5113 3.6875 37 1 4.0176 0.3780 -0.0108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244843708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:14 Heat of formation + Delta-G solvation = -48.590729 kcal Electronic energy + Delta-G solvation = -21901.318852 eV Core-core repulsion = 18607.990275 eV Total energy + Delta-G solvation = -3293.328577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.89774 -38.67512 -37.55160 -36.17438 -33.92915 -32.46697 -31.17239 -30.43073 -28.61644 -27.37371 -25.73667 -25.41083 -22.98284 -21.50957 -21.09869 -19.94748 -18.42409 -17.48517 -17.33245 -16.09202 -15.71909 -15.53385 -15.45863 -14.96903 -14.53696 -14.34280 -13.83236 -13.69439 -13.15046 -12.76489 -12.65652 -12.45325 -12.17383 -12.01382 -11.88594 -11.78546 -11.41075 -10.90173 -10.73438 -10.68795 -10.40698 -10.13764 -10.07045 -9.66200 -9.33706 -8.84690 -8.35493 -7.87338 -7.79361 -7.55768 -7.28683 -4.83059 1.56887 1.84434 2.51929 2.60892 3.57452 3.59272 3.66694 3.99000 4.08697 4.40132 4.55399 4.58575 4.99728 5.08936 5.18509 5.24652 5.27428 5.38694 5.45220 5.54225 5.61440 5.73457 5.78091 5.85629 6.01054 6.10922 6.25852 6.39432 6.51491 6.69865 6.80253 6.91508 7.05497 7.12118 7.36313 7.38342 7.43981 7.55008 7.62863 7.79378 8.03163 8.21809 8.56349 9.38077 9.91855 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.015706 B = 0.006208 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.287926 B = 4509.099404 C = 5808.788445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.317 6.317 3 C 0.118 3.882 4 C -0.208 4.208 5 C -0.064 4.064 6 C 0.122 3.878 7 O -0.566 6.566 8 C -0.139 4.139 9 C 0.054 3.946 10 C -0.225 4.225 11 C -0.016 4.016 12 C -0.319 4.319 13 C 0.162 3.838 14 N -0.571 5.571 15 C 0.259 3.741 16 C -0.457 4.457 17 H 0.094 0.906 18 C 0.041 3.959 19 N -0.792 5.792 20 Si 1.155 2.845 21 H -0.332 1.332 22 H -0.292 1.292 23 H -0.281 1.281 24 C -0.126 4.126 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.095 0.905 28 H 0.119 0.881 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.375 0.625 32 H 0.118 0.882 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.129 0.871 36 H 0.285 0.715 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.423 6.812 -5.436 12.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C 0.074 3.926 4 C -0.227 4.227 5 C -0.064 4.064 6 C 0.044 3.956 7 O -0.372 6.372 8 C -0.158 4.158 9 C 0.053 3.947 10 C -0.229 4.229 11 C -0.040 4.040 12 C -0.342 4.342 13 C -0.003 4.003 14 N -0.288 5.288 15 C 0.138 3.862 16 C -0.487 4.487 17 H 0.111 0.889 18 C -0.182 4.182 19 N -0.412 5.412 20 Si 0.990 3.010 21 H -0.266 1.266 22 H -0.220 1.220 23 H -0.209 1.209 24 C -0.145 4.145 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.113 0.887 28 H 0.137 0.863 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.221 0.779 32 H 0.136 0.864 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.146 0.854 36 H 0.096 0.904 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.400 4.751 -4.341 9.807 hybrid contribution -2.711 2.021 -0.996 3.525 sum -10.112 6.773 -5.337 13.289 Atomic orbital electron populations 1.22956 0.79315 1.03326 1.00920 1.86097 1.20617 1.27210 1.89184 1.18860 0.92206 0.83676 0.97864 1.20881 0.99042 0.91766 1.10978 1.19103 0.93456 0.92943 1.00895 1.20955 0.97182 0.94013 0.83423 1.86608 1.76042 1.47802 1.26705 1.21037 0.92248 0.98070 1.04400 1.18372 0.92411 0.91057 0.92869 1.19104 0.90796 1.08761 1.04264 1.21030 0.94094 0.93801 0.95068 1.21075 0.94332 1.11475 1.07350 1.22228 0.98618 0.90207 0.89201 1.66522 1.09700 1.25765 1.26847 1.18535 0.87035 0.89913 0.90746 1.20993 0.96988 1.16440 1.14302 0.88859 1.27929 1.10558 0.89715 0.89971 1.70628 1.14357 1.30258 1.25958 0.81816 0.69790 0.74742 0.74696 1.26577 1.22030 1.20854 1.20718 0.90577 0.99093 1.04083 0.93059 0.93062 0.88690 0.86334 0.93215 0.92755 0.77886 0.86422 0.87708 0.87633 0.85368 0.90356 0.84623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.32 -5.62 10.49 -19.44 -0.20 -5.82 16 3 C 0.12 2.26 6.68 -39.27 -0.26 2.00 16 4 C -0.21 -3.51 8.69 -39.31 -0.34 -3.85 16 5 C -0.06 -1.08 5.50 -104.70 -0.58 -1.65 16 6 C 0.12 1.56 7.16 36.00 0.26 1.82 16 7 O -0.57 -7.17 13.64 -35.23 -0.48 -7.65 16 8 C -0.14 -2.64 9.19 -39.14 -0.36 -3.00 16 9 C 0.05 1.16 4.97 -104.91 -0.52 0.64 16 10 C -0.22 -5.22 5.54 -104.07 -0.58 -5.80 16 11 C -0.02 -0.33 9.66 -38.99 -0.38 -0.71 16 12 C -0.32 -6.39 10.10 -39.22 -0.40 -6.79 16 13 C 0.16 3.48 11.17 -17.48 -0.20 3.28 16 14 N -0.57 -14.27 4.58 -10.91 -0.05 -14.32 16 15 C 0.26 6.65 6.39 -84.72 -0.54 6.11 16 16 C -0.46 -12.20 8.19 -37.89 -0.31 -12.51 16 17 H 0.09 2.52 5.86 -52.48 -0.31 2.22 16 18 C 0.04 1.10 5.52 -17.32 -0.10 1.00 16 19 N -0.79 -21.34 13.65 55.56 0.76 -20.58 16 20 Si 1.15 28.18 25.51 -169.99 -4.34 23.85 16 21 H -0.33 -8.03 7.11 56.52 0.40 -7.63 16 22 H -0.29 -7.16 7.09 56.52 0.40 -6.76 16 23 H -0.28 -6.80 6.76 56.52 0.38 -6.41 16 24 C -0.13 -2.72 7.59 -39.01 -0.30 -3.01 16 25 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 26 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.12 1.67 6.28 -52.48 -0.33 1.34 16 29 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 30 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 31 H 0.37 2.62 9.12 45.56 0.42 3.03 16 32 H 0.12 2.09 8.05 -52.48 -0.42 1.67 16 33 H 0.10 1.93 8.06 -52.48 -0.42 1.51 16 34 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.13 2.32 8.06 -52.49 -0.42 1.89 16 36 H 0.29 7.43 8.72 -40.82 -0.36 7.07 16 37 H 0.14 3.15 7.32 -52.49 -0.38 2.77 16 LS Contribution 314.12 15.07 4.73 4.73 Total: -1.00 -31.00 314.12 -6.70 -37.70 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -3.53 Total: 3.21 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -3.60 Total: -21.12 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.71 Total: -34.90 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.68 Total: -13.47 kcal Atomic # 14 Polarization: 28.18 SS G_CDS: -4.34 Total: 23.85 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.00 -6.70 -37.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244843708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.891 kcal (2) G-P(sol) polarization free energy of solvation -30.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds