Wall clock time and date at job start Tue Mar 31 2020 06:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35905 * 117.00222 * 2 1 4 4 C 1.38919 * 119.97640 * 0.02562 * 3 2 1 5 5 C 1.38293 * 120.25319 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.89786 * 179.97438 * 5 4 3 7 7 O 1.42895 * 109.47054 * 270.02125 * 6 5 4 8 8 C 1.37969 * 120.20771 * 359.97438 * 5 4 3 9 9 C 1.39688 * 119.95802 * 0.02562 * 8 5 4 10 10 C 1.47833 * 120.12615 * 180.02562 * 9 8 5 11 11 C 1.39668 * 120.64917 * 310.29529 * 10 9 8 12 12 C 1.38395 * 118.47694 * 180.26307 * 11 10 9 13 13 C 1.39062 * 119.72087 * 359.72381 * 12 11 10 14 14 N 1.31280 * 121.33654 * 359.97438 * 13 12 11 15 15 C 1.33699 * 121.64065 * 0.02562 * 14 13 12 16 16 C 1.40814 * 119.93792 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99665 * 171.22299 * 16 15 14 18 18 C 1.40149 * 120.00112 * 351.22565 * 16 15 14 19 19 N 1.30701 * 119.99797 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 120.00099 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47332 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.47242 * 299.99961 * 20 18 16 23 23 H 1.48504 * 109.47403 * 59.99948 * 20 18 16 24 24 C 1.38393 * 119.98461 * 180.30011 * 3 2 1 25 25 H 1.08999 * 109.47250 * 299.99390 * 1 2 3 26 26 H 1.08998 * 109.47430 * 59.99489 * 1 2 3 27 27 H 1.09001 * 109.47223 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.87709 * 0.03284 * 4 3 2 29 29 H 1.08994 * 109.46948 * 30.02286 * 6 5 4 30 30 H 1.09000 * 109.47010 * 150.02074 * 6 5 4 31 31 H 0.96705 * 114.00316 * 179.97438 * 7 6 5 32 32 H 1.08004 * 120.02236 * 180.02562 * 8 5 4 33 33 H 1.08007 * 120.76483 * 359.97438 * 11 10 9 34 34 H 1.07988 * 120.14045 * 179.70823 * 12 11 10 35 35 H 1.08000 * 119.32712 * 180.02562 * 13 12 11 36 36 H 0.97000 * 119.99768 * 355.11330 * 19 18 16 37 37 H 1.08002 * 120.10469 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2889 2.3757 0.0005 5 6 1.9109 3.6109 0.0000 6 6 1.0818 4.8693 0.0000 7 8 0.8188 5.2665 -1.3472 8 6 3.2880 3.6947 -0.0005 9 6 4.0578 2.5290 -0.0011 10 6 5.5336 2.6145 -0.0011 11 6 6.1995 3.4319 -0.9172 12 6 7.5823 3.4737 -0.8808 13 6 8.2705 2.7147 0.0595 14 7 7.6351 1.9541 0.9203 15 6 6.3006 1.8731 0.9333 16 6 5.6558 1.0460 1.8730 17 1 4.5819 1.0860 1.9804 18 6 6.4077 0.1712 2.6690 19 7 5.8091 -0.5968 3.5409 20 14 8.2652 0.1027 2.4838 21 1 8.8208 -0.8954 3.4325 22 1 8.6099 -0.2908 1.0939 23 1 8.8415 1.4396 2.7771 24 6 3.4280 1.2829 -0.0063 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 0.2105 2.3165 0.0015 29 1 0.1391 4.6833 0.5146 30 1 1.6255 5.6626 0.5131 31 1 0.2881 6.0712 -1.4236 32 1 3.7706 4.6609 -0.0005 33 1 5.6481 4.0143 -1.6406 34 1 8.1247 4.0929 -1.5798 35 1 9.3496 2.7524 0.0825 36 1 4.8541 -0.5113 3.6875 37 1 4.0176 0.3780 -0.0108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244843708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:13 Heat of formation + Delta-G solvation = -69.904086 kcal Electronic energy + Delta-G solvation = -21902.243069 eV Core-core repulsion = 18607.990275 eV Total energy + Delta-G solvation = -3294.252794 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.33515 -40.35224 -38.77620 -37.31993 -35.83702 -33.99868 -32.89223 -31.90602 -30.20425 -28.44337 -27.41765 -26.73826 -24.58600 -23.23189 -22.54566 -21.47318 -20.36454 -18.69467 -18.36343 -17.54655 -17.35092 -16.98036 -16.76238 -16.60320 -16.00830 -15.62485 -15.39205 -15.04582 -14.70106 -14.46343 -14.15916 -14.14951 -13.72986 -13.62265 -13.22183 -13.03828 -12.70807 -12.62651 -12.36768 -12.06882 -11.96355 -11.76334 -11.48299 -11.30418 -10.99044 -10.54586 -10.04091 -9.72794 -9.40045 -9.27827 -9.07321 -6.76545 0.04694 0.39524 0.73748 0.91457 1.60111 1.73103 2.05800 2.35434 2.45533 2.63124 2.72353 3.46832 3.57871 3.77745 3.98658 4.02848 4.09545 4.23022 4.26710 4.31751 4.34385 4.39577 4.50052 4.51392 4.64451 4.65467 4.65823 4.78636 4.99696 5.14032 5.25655 5.38290 5.38812 5.50179 5.56272 5.74726 5.84355 5.89487 6.05944 6.37277 6.45616 6.67216 6.93176 7.55839 7.92486 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.015706 B = 0.006208 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.287926 B = 4509.099404 C = 5808.788445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.344 6.344 3 C 0.114 3.886 4 C -0.200 4.200 5 C -0.062 4.062 6 C 0.125 3.875 7 O -0.585 6.585 8 C -0.146 4.146 9 C 0.030 3.970 10 C -0.233 4.233 11 C -0.023 4.023 12 C -0.291 4.291 13 C 0.139 3.861 14 N -0.595 5.595 15 C 0.244 3.756 16 C -0.491 4.491 17 H 0.073 0.927 18 C 0.013 3.987 19 N -0.823 5.823 20 Si 1.190 2.810 21 H -0.333 1.333 22 H -0.297 1.297 23 H -0.278 1.278 24 C -0.155 4.155 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.118 0.882 28 H 0.154 0.846 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.401 0.599 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.149 0.851 35 H 0.165 0.835 36 H 0.278 0.722 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.493 9.644 -7.302 16.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.258 6.258 3 C 0.069 3.931 4 C -0.218 4.218 5 C -0.062 4.062 6 C 0.048 3.952 7 O -0.394 6.394 8 C -0.165 4.165 9 C 0.029 3.971 10 C -0.237 4.237 11 C -0.047 4.047 12 C -0.313 4.313 13 C -0.022 4.022 14 N -0.314 5.314 15 C 0.122 3.878 16 C -0.523 4.523 17 H 0.091 0.909 18 C -0.204 4.204 19 N -0.446 5.446 20 Si 1.023 2.977 21 H -0.267 1.267 22 H -0.225 1.225 23 H -0.205 1.205 24 C -0.174 4.174 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.136 0.864 28 H 0.171 0.829 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.251 0.749 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.167 0.833 35 H 0.183 0.817 36 H 0.089 0.911 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.476 7.621 -6.232 12.991 hybrid contribution -2.475 1.335 -0.679 2.893 sum -10.952 8.956 -6.910 15.745 Atomic orbital electron populations 1.23350 0.76316 1.05532 1.02323 1.86069 1.23775 1.26969 1.88988 1.18940 0.91611 0.85132 0.97396 1.21258 1.00623 0.90809 1.09135 1.19653 0.93194 0.94977 0.98351 1.20945 0.97911 0.92265 0.84056 1.86525 1.76928 1.49668 1.26327 1.21184 0.93320 0.97389 1.04588 1.18443 0.92000 0.92006 0.94665 1.19444 0.92069 1.08320 1.03891 1.21442 0.94872 0.93515 0.94835 1.21620 0.94143 1.09402 1.06101 1.22940 1.00540 0.89786 0.88959 1.66431 1.09510 1.26986 1.28448 1.18717 0.87875 0.90178 0.91076 1.20830 0.96178 1.18783 1.16493 0.90852 1.28612 1.12452 0.89589 0.89774 1.70657 1.13972 1.31996 1.27929 0.81338 0.67664 0.74582 0.74108 1.26658 1.22544 1.20510 1.20541 0.91951 0.98031 1.06905 0.91715 0.91347 0.86358 0.82867 0.90434 0.91271 0.74879 0.85240 0.84789 0.83285 0.81744 0.91092 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.54 16 2 O -0.34 -12.32 10.49 -92.49 -0.97 -13.29 16 3 C 0.11 4.42 6.68 22.47 0.15 4.57 16 4 C -0.20 -6.35 8.69 22.45 0.19 -6.16 16 5 C -0.06 -1.93 5.50 -19.92 -0.11 -2.04 16 6 C 0.13 2.69 7.16 71.24 0.51 3.21 16 7 O -0.59 -12.34 13.64 -148.98 -2.03 -14.37 16 8 C -0.15 -5.39 9.19 22.56 0.21 -5.18 16 9 C 0.03 1.31 4.97 -20.05 -0.10 1.21 16 10 C -0.23 -10.93 5.54 -19.51 -0.11 -11.04 16 11 C -0.02 -0.89 9.66 22.65 0.22 -0.67 16 12 C -0.29 -10.57 10.10 22.51 0.23 -10.35 16 13 C 0.14 5.66 11.17 84.97 0.95 6.61 16 14 N -0.60 -29.75 4.58 -188.43 -0.86 -30.61 16 15 C 0.24 12.94 6.39 40.37 0.26 13.20 16 16 C -0.49 -27.98 8.19 23.36 0.19 -27.79 16 17 H 0.07 4.34 5.86 -2.91 -0.02 4.32 16 18 C 0.01 0.72 5.52 85.33 0.47 1.19 16 19 N -0.82 -47.27 13.65 21.86 0.30 -46.97 16 20 Si 1.19 59.26 25.51 68.60 1.75 61.01 16 21 H -0.33 -16.27 7.11 99.48 0.71 -15.56 16 22 H -0.30 -14.75 7.09 99.48 0.70 -14.04 16 23 H -0.28 -13.43 6.76 99.48 0.67 -12.76 16 24 C -0.16 -7.09 7.59 22.64 0.17 -6.91 16 25 H 0.06 1.28 7.66 -2.39 -0.02 1.26 16 26 H 0.07 1.30 7.66 -2.39 -0.02 1.28 16 27 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.15 3.72 6.28 -2.91 -0.02 3.70 16 29 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 30 H 0.07 1.30 8.08 -2.39 -0.02 1.28 16 31 H 0.40 3.79 9.12 -74.05 -0.68 3.12 16 32 H 0.13 4.33 8.05 -2.91 -0.02 4.31 16 33 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 34 H 0.15 4.17 8.06 -2.92 -0.02 4.15 16 35 H 0.17 5.37 8.06 -2.91 -0.02 5.34 16 36 H 0.28 15.71 8.72 -92.71 -0.81 14.90 16 37 H 0.10 5.10 7.32 -2.91 -0.02 5.08 16 Total: -1.00 -71.61 314.12 2.88 -68.73 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.36 Total: 14.13 kcal Atomic # 6 Polarization: -42.97 SS G_CDS: 4.35 Total: -38.63 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -0.57 Total: -77.58 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -3.00 Total: -27.66 kcal Atomic # 14 Polarization: 59.26 SS G_CDS: 1.75 Total: 61.01 kcal Total: -71.61 2.88 -68.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244843708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.174 kcal (2) G-P(sol) polarization free energy of solvation -71.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds