Wall clock time and date at job start Tue Mar 31 2020 06:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47220 * 145.08146 * 3 2 1 5 5 N 1.46496 * 109.47460 * 179.97438 * 4 3 2 6 6 C 1.46505 * 119.99931 * 269.99829 * 5 4 3 7 7 C 1.50697 * 109.47089 * 269.99595 * 6 5 4 8 8 H 1.07999 * 119.99659 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00028 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00400 * 180.02562 * 9 7 6 11 11 Si 1.86807 * 119.99816 * 359.97438 * 9 7 6 12 12 H 1.48508 * 109.46696 * 90.00307 * 11 9 7 13 13 H 1.48501 * 109.47054 * 209.99571 * 11 9 7 14 14 H 1.48494 * 109.47358 * 330.00177 * 11 9 7 15 15 C 1.34777 * 120.00344 * 89.99378 * 5 4 3 16 16 O 1.21693 * 120.00201 * 180.02562 * 15 5 4 17 17 C 1.46425 * 119.99668 * 0.02562 * 15 5 4 18 18 C 1.34808 * 119.99920 * 179.97438 * 17 15 5 19 19 C 1.47207 * 120.00030 * 179.72181 * 18 17 15 20 20 C 1.40274 * 120.58671 * 180.27503 * 19 18 17 21 21 C 1.38285 * 118.26464 * 179.97438 * 20 19 18 22 22 C 1.38390 * 119.33667 * 0.02562 * 21 20 19 23 23 N 1.31936 * 121.14240 * 0.02562 * 22 21 20 24 24 C 1.31666 * 121.90014 * 359.67580 * 23 22 21 25 25 H 1.09003 * 109.47160 * 25.07759 * 3 2 1 26 26 H 1.09002 * 109.46999 * 265.08019 * 3 2 1 27 27 H 1.08995 * 109.47527 * 59.99468 * 4 3 2 28 28 H 1.09002 * 109.47031 * 299.99854 * 4 3 2 29 29 H 1.08997 * 109.46629 * 30.00188 * 6 5 4 30 30 H 1.08999 * 109.46571 * 149.99595 * 6 5 4 31 31 H 0.96996 * 120.00499 * 179.97438 * 10 9 7 32 32 H 1.08001 * 120.00362 * 0.02562 * 17 15 5 33 33 H 1.08002 * 120.00248 * 0.02562 * 18 17 15 34 34 H 1.07993 * 120.86536 * 359.96328 * 20 19 18 35 35 H 1.08004 * 120.32758 * 180.02562 * 21 20 19 36 36 H 1.08006 * 119.42923 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.73852 * 180.29384 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.1836 -0.8257 5 7 4.5824 1.1847 -0.8252 6 6 5.3141 1.9117 0.2153 7 6 5.5644 3.3258 -0.2415 8 1 5.2133 3.6506 -1.2098 9 6 6.2408 4.2051 0.5771 10 7 6.4589 5.4393 0.1788 11 14 6.8463 3.6438 2.2528 12 1 8.2202 3.0947 2.1242 13 1 6.8601 4.7985 3.1864 14 1 5.9402 2.5919 2.7797 15 6 5.2572 0.5168 -1.7818 16 8 6.4741 0.5174 -1.7812 17 6 4.5259 -0.2093 -2.8220 18 6 5.2008 -0.8770 -3.7792 19 6 4.4656 -1.6121 -4.8214 20 6 5.1554 -2.3157 -5.8198 21 6 4.4168 -2.9900 -6.7748 22 6 3.0348 -2.9496 -6.7164 23 7 2.4113 -2.2789 -5.7665 24 6 3.0677 -1.6253 -4.8308 25 1 2.9717 -0.9300 -0.4356 26 1 2.9713 0.0890 1.0239 27 1 2.7537 2.1142 -0.3902 28 1 2.7542 1.0953 -1.8496 29 1 4.7246 1.9248 1.1320 30 1 6.2667 1.4164 0.4029 31 1 6.9344 6.0580 0.7548 32 1 3.4459 -0.2095 -2.8229 33 1 6.2808 -0.8765 -3.7786 34 1 6.2350 -2.3301 -5.8422 35 1 4.9137 -3.5428 -7.5585 36 1 2.4565 -3.4754 -7.4618 37 1 2.5218 -1.0916 -4.0668 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049377354.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:20 Heat of formation + Delta-G solvation = 49.419509 kcal Electronic energy + Delta-G solvation = -20932.742374 eV Core-core repulsion = 17675.956591 eV Total energy + Delta-G solvation = -3256.785783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.34843 -39.37455 -36.94203 -35.45167 -34.57254 -32.84492 -32.48563 -31.05327 -30.12108 -28.02569 -24.94538 -24.11070 -23.76923 -22.64329 -20.55158 -18.42614 -17.87198 -17.56531 -16.93683 -16.79442 -16.35090 -15.54335 -15.17020 -14.71979 -14.57112 -14.19136 -14.07497 -13.93642 -13.62889 -13.33296 -13.21084 -12.71843 -12.52405 -12.41440 -12.02288 -11.99435 -11.82841 -11.57943 -11.09000 -10.98275 -10.84749 -10.58174 -10.24282 -9.90796 -9.71432 -9.62252 -9.28016 -8.64279 -8.58567 -7.92891 -6.13514 -4.13497 0.29402 0.98707 1.92767 2.69149 2.76975 3.25144 3.30414 3.32904 3.49319 3.55724 3.80696 4.06952 4.18012 4.34462 4.51965 4.56155 4.62611 4.74475 4.88931 5.03568 5.06297 5.13618 5.20416 5.29242 5.38130 5.52469 5.72206 5.74753 5.81529 6.01010 6.17767 6.29340 6.43415 6.60351 6.84807 7.15176 7.52370 7.53761 7.69132 8.03055 8.39349 8.76342 8.90592 9.45632 10.99714 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.016186 B = 0.004164 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.486785 B = 6722.531293 C = 7985.699873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.215 3.785 3 C -0.051 4.051 4 C 0.115 3.885 5 N -0.585 5.585 6 C 0.214 3.786 7 C -0.533 4.533 8 H 0.076 0.924 9 C 0.074 3.926 10 N -0.895 5.895 11 Si 0.875 3.125 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.540 3.460 16 O -0.533 6.533 17 C -0.187 4.187 18 C -0.042 4.042 19 C -0.112 4.112 20 C -0.059 4.059 21 C -0.173 4.173 22 C 0.097 3.903 23 N -0.484 5.484 24 C 0.112 3.888 25 H 0.109 0.891 26 H 0.116 0.884 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.034 0.966 30 H 0.041 0.959 31 H 0.265 0.735 32 H 0.128 0.872 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.155 0.845 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.792 -16.893 -8.867 19.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.104 4.104 3 C -0.093 4.093 4 C -0.011 4.011 5 N -0.315 5.315 6 C 0.094 3.906 7 C -0.571 4.571 8 H 0.094 0.906 9 C -0.129 4.129 10 N -0.533 5.533 11 Si 0.702 3.298 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.189 1.189 15 C 0.329 3.671 16 O -0.412 6.412 17 C -0.208 4.208 18 C -0.062 4.062 19 C -0.114 4.114 20 C -0.084 4.084 21 C -0.193 4.193 22 C -0.059 4.059 23 N -0.192 5.192 24 C -0.046 4.046 25 H 0.127 0.873 26 H 0.134 0.866 27 H 0.116 0.884 28 H 0.099 0.901 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.145 0.855 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.173 0.827 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.670 -16.677 -8.768 19.987 hybrid contribution 1.679 -0.039 0.835 1.876 sum -4.991 -16.715 -7.933 19.164 Atomic orbital electron populations 1.81226 1.12986 1.08676 1.08896 1.29049 0.95049 0.93147 0.93122 1.19908 0.81520 1.02519 1.05341 1.21383 0.81654 0.97797 1.00227 1.47774 1.05023 1.49778 1.28937 1.19751 0.92582 0.92583 0.85688 1.21304 1.37364 0.93371 1.05059 0.90608 1.24855 0.95188 0.94711 0.98169 1.69887 1.41261 1.04766 1.37429 0.86872 0.80158 0.78559 0.84208 1.19887 1.21100 1.18944 1.18106 0.87404 0.79647 0.81976 1.90804 1.13451 1.62378 1.74520 1.23291 1.00369 1.00262 0.96871 1.22180 1.00434 0.92655 0.90964 1.20110 0.94754 0.99584 0.96934 1.21855 1.00866 0.93341 0.92377 1.22107 0.95564 1.01316 1.00295 1.22885 0.92210 0.95174 0.95661 1.67656 1.41156 1.07482 1.02897 1.23154 0.90727 0.94924 0.95804 0.87336 0.86638 0.88383 0.90120 0.94861 0.94143 0.92482 0.85471 0.84275 0.84201 0.84517 0.82736 0.82372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.31 18.54 42.15 0.78 -5.53 16 2 C 0.21 2.47 15.43 -20.76 -0.32 2.15 16 3 C -0.05 -0.49 6.03 -29.52 -0.18 -0.67 16 4 C 0.12 1.46 5.07 -4.05 -0.02 1.44 16 5 N -0.59 -10.22 2.46 -176.71 -0.43 -10.65 16 6 C 0.21 4.66 4.23 -5.19 -0.02 4.64 16 7 C -0.53 -14.33 9.94 -34.44 -0.34 -14.67 16 8 H 0.08 2.26 8.06 -52.49 -0.42 1.83 16 9 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.90 -26.73 13.96 55.43 0.77 -25.95 16 11 Si 0.88 20.43 27.47 -169.99 -4.67 15.76 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 15 C 0.54 9.58 7.61 -12.96 -0.10 9.48 16 16 O -0.53 -11.81 15.81 5.20 0.08 -11.73 16 17 C -0.19 -2.39 8.62 -37.50 -0.32 -2.72 16 18 C -0.04 -0.50 9.48 -37.16 -0.35 -0.85 16 19 C -0.11 -1.17 5.88 -104.91 -0.62 -1.78 16 20 C -0.06 -0.51 9.95 -38.80 -0.39 -0.90 16 21 C -0.17 -1.31 10.09 -39.51 -0.40 -1.71 16 22 C 0.10 0.85 11.17 -17.45 -0.19 0.65 16 23 N -0.48 -5.42 10.34 -12.83 -0.13 -5.56 16 24 C 0.11 1.19 10.59 -17.04 -0.18 1.01 16 25 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.10 1.34 8.07 -51.93 -0.42 0.92 16 28 H 0.08 0.86 6.09 -51.93 -0.32 0.54 16 29 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 30 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 31 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 32 H 0.13 1.24 4.25 -52.49 -0.22 1.02 16 33 H 0.14 1.74 7.52 -52.49 -0.39 1.35 16 34 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 35 H 0.14 0.65 8.06 -52.48 -0.42 0.22 16 36 H 0.16 0.92 8.06 -52.48 -0.42 0.49 16 37 H 0.16 1.44 6.19 -52.48 -0.32 1.11 16 LS Contribution 331.81 15.07 5.00 5.00 Total: -1.00 -34.97 331.81 -6.24 -41.21 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -4.11 Total: -0.56 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -3.53 Total: -1.98 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.99 Total: -47.69 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.67 Total: 15.76 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.97 -6.24 -41.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049377354.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.626 kcal (2) G-P(sol) polarization free energy of solvation -34.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds