Wall clock time and date at job start Tue Mar 31 2020 06:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47220 * 145.08146 * 3 2 1 5 5 N 1.46496 * 109.47460 * 179.97438 * 4 3 2 6 6 C 1.46505 * 119.99931 * 269.99829 * 5 4 3 7 7 C 1.50697 * 109.47089 * 269.99595 * 6 5 4 8 8 H 1.07999 * 119.99659 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00028 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00400 * 180.02562 * 9 7 6 11 11 Si 1.86807 * 119.99816 * 359.97438 * 9 7 6 12 12 H 1.48508 * 109.46696 * 90.00307 * 11 9 7 13 13 H 1.48501 * 109.47054 * 209.99571 * 11 9 7 14 14 H 1.48494 * 109.47358 * 330.00177 * 11 9 7 15 15 C 1.34777 * 120.00344 * 89.99378 * 5 4 3 16 16 O 1.21693 * 120.00201 * 180.02562 * 15 5 4 17 17 C 1.46425 * 119.99668 * 0.02562 * 15 5 4 18 18 C 1.34808 * 119.99920 * 179.97438 * 17 15 5 19 19 C 1.47207 * 120.00030 * 179.72181 * 18 17 15 20 20 C 1.40274 * 120.58671 * 180.27503 * 19 18 17 21 21 C 1.38285 * 118.26464 * 179.97438 * 20 19 18 22 22 C 1.38390 * 119.33667 * 0.02562 * 21 20 19 23 23 N 1.31936 * 121.14240 * 0.02562 * 22 21 20 24 24 C 1.31666 * 121.90014 * 359.67580 * 23 22 21 25 25 H 1.09003 * 109.47160 * 25.07759 * 3 2 1 26 26 H 1.09002 * 109.46999 * 265.08019 * 3 2 1 27 27 H 1.08995 * 109.47527 * 59.99468 * 4 3 2 28 28 H 1.09002 * 109.47031 * 299.99854 * 4 3 2 29 29 H 1.08997 * 109.46629 * 30.00188 * 6 5 4 30 30 H 1.08999 * 109.46571 * 149.99595 * 6 5 4 31 31 H 0.96996 * 120.00499 * 179.97438 * 10 9 7 32 32 H 1.08001 * 120.00362 * 0.02562 * 17 15 5 33 33 H 1.08002 * 120.00248 * 0.02562 * 18 17 15 34 34 H 1.07993 * 120.86536 * 359.96328 * 20 19 18 35 35 H 1.08004 * 120.32758 * 180.02562 * 21 20 19 36 36 H 1.08006 * 119.42923 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.73852 * 180.29384 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.1836 -0.8257 5 7 4.5824 1.1847 -0.8252 6 6 5.3141 1.9117 0.2153 7 6 5.5644 3.3258 -0.2415 8 1 5.2133 3.6506 -1.2098 9 6 6.2408 4.2051 0.5771 10 7 6.4589 5.4393 0.1788 11 14 6.8463 3.6438 2.2528 12 1 8.2202 3.0947 2.1242 13 1 6.8601 4.7985 3.1864 14 1 5.9402 2.5919 2.7797 15 6 5.2572 0.5168 -1.7818 16 8 6.4741 0.5174 -1.7812 17 6 4.5259 -0.2093 -2.8220 18 6 5.2008 -0.8770 -3.7792 19 6 4.4656 -1.6121 -4.8214 20 6 5.1554 -2.3157 -5.8198 21 6 4.4168 -2.9900 -6.7748 22 6 3.0348 -2.9496 -6.7164 23 7 2.4113 -2.2789 -5.7665 24 6 3.0677 -1.6253 -4.8308 25 1 2.9717 -0.9300 -0.4356 26 1 2.9713 0.0890 1.0239 27 1 2.7537 2.1142 -0.3902 28 1 2.7542 1.0953 -1.8496 29 1 4.7246 1.9248 1.1320 30 1 6.2667 1.4164 0.4029 31 1 6.9344 6.0580 0.7548 32 1 3.4459 -0.2095 -2.8229 33 1 6.2808 -0.8765 -3.7786 34 1 6.2350 -2.3301 -5.8422 35 1 4.9137 -3.5428 -7.5585 36 1 2.4565 -3.4754 -7.4618 37 1 2.5218 -1.0916 -4.0668 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049377354.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:20 Heat of formation + Delta-G solvation = 26.429921 kcal Electronic energy + Delta-G solvation = -20933.739278 eV Core-core repulsion = 17675.956591 eV Total energy + Delta-G solvation = -3257.782687 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.15257 -40.63877 -38.00913 -36.76538 -35.54413 -34.74963 -33.22229 -32.34400 -31.08902 -29.60111 -26.04654 -25.24745 -24.61571 -23.95825 -21.70162 -19.59617 -19.15816 -18.71120 -18.33087 -17.78178 -17.42909 -16.67139 -16.16671 -15.98534 -15.75053 -15.50496 -15.02082 -14.90700 -14.73535 -14.54270 -14.28030 -13.97101 -13.77489 -13.56207 -13.41969 -13.14020 -12.93484 -12.65680 -12.60673 -12.36875 -11.98436 -11.89907 -11.76098 -11.67704 -10.77411 -10.74381 -10.59213 -10.40976 -9.59758 -9.28960 -8.27019 -6.32060 -0.54053 0.31849 0.99468 1.40039 1.43980 1.51568 1.73230 1.86460 2.23361 2.37621 2.46599 2.95773 3.07372 3.14903 3.46054 3.61149 3.86690 3.95063 4.00602 4.08281 4.11975 4.24073 4.24824 4.56867 4.60219 4.81816 4.84564 4.86398 4.97375 5.01672 5.11579 5.15227 5.35298 5.44066 5.53133 5.65117 5.74507 6.29921 6.61938 6.68522 6.71605 6.99304 7.27328 7.42751 8.89972 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.016186 B = 0.004164 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.486785 B = 6722.531293 C = 7985.699873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.244 3.756 3 C -0.038 4.038 4 C 0.110 3.890 5 N -0.588 5.588 6 C 0.221 3.779 7 C -0.535 4.535 8 H 0.028 0.972 9 C 0.008 3.992 10 N -0.950 5.950 11 Si 0.945 3.055 12 H -0.277 1.277 13 H -0.284 1.284 14 H -0.226 1.226 15 C 0.535 3.465 16 O -0.590 6.590 17 C -0.201 4.201 18 C -0.018 4.018 19 C -0.130 4.130 20 C -0.061 4.061 21 C -0.167 4.167 22 C 0.094 3.906 23 N -0.513 5.513 24 C 0.104 3.896 25 H 0.138 0.862 26 H 0.130 0.870 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.027 0.973 31 H 0.266 0.734 32 H 0.160 0.840 33 H 0.128 0.872 34 H 0.158 0.842 35 H 0.170 0.830 36 H 0.182 0.818 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.502 -19.727 -8.962 22.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.073 4.073 3 C -0.078 4.078 4 C -0.015 4.015 5 N -0.317 5.317 6 C 0.099 3.901 7 C -0.574 4.574 8 H 0.047 0.953 9 C -0.189 4.189 10 N -0.590 5.590 11 Si 0.768 3.232 12 H -0.203 1.203 13 H -0.210 1.210 14 H -0.149 1.149 15 C 0.326 3.674 16 O -0.473 6.473 17 C -0.221 4.221 18 C -0.039 4.039 19 C -0.132 4.132 20 C -0.086 4.086 21 C -0.186 4.186 22 C -0.062 4.062 23 N -0.222 5.222 24 C -0.053 4.053 25 H 0.155 0.845 26 H 0.148 0.852 27 H 0.104 0.896 28 H 0.120 0.880 29 H 0.080 0.920 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.177 0.823 33 H 0.146 0.854 34 H 0.175 0.825 35 H 0.188 0.812 36 H 0.199 0.801 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.446 -19.541 -8.870 22.715 hybrid contribution 1.913 0.801 0.613 2.163 sum -5.533 -18.740 -8.257 21.213 Atomic orbital electron populations 1.81270 1.14519 1.10337 1.10608 1.29177 0.94992 0.91591 0.91566 1.19867 0.79985 1.02209 1.05786 1.21581 0.78783 0.98803 1.02283 1.47722 1.06832 1.49041 1.28113 1.19444 0.93252 0.89606 0.87777 1.21626 1.36471 0.96171 1.03100 0.95331 1.25870 0.95465 0.94596 1.02987 1.70062 1.43018 1.06489 1.39459 0.85757 0.79804 0.79016 0.78642 1.20312 1.20953 1.14857 1.18844 0.87002 0.79188 0.82328 1.90766 1.15979 1.64639 1.75902 1.23070 1.01440 1.01354 0.96209 1.22229 1.00036 0.91091 0.90525 1.20031 0.94826 1.00866 0.97463 1.22201 1.02013 0.92509 0.91881 1.22458 0.95162 1.00593 1.00422 1.23453 0.93216 0.94222 0.95302 1.67694 1.42009 1.08610 1.03865 1.23333 0.90853 0.94973 0.96112 0.84466 0.85215 0.89565 0.87974 0.91979 0.95478 0.92505 0.82322 0.85398 0.82478 0.81222 0.80138 0.81463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.28 18.54 20.00 0.37 -12.91 16 2 C 0.24 5.03 15.43 89.44 1.38 6.41 16 3 C -0.04 -0.60 6.03 28.79 0.17 -0.43 16 4 C 0.11 2.59 5.07 86.38 0.44 3.03 16 5 N -0.59 -20.14 2.46 -831.21 -2.04 -22.18 16 6 C 0.22 9.50 4.23 85.63 0.36 9.86 16 7 C -0.54 -29.62 9.94 25.60 0.25 -29.37 16 8 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 9 C 0.01 0.47 5.47 84.65 0.46 0.94 16 10 N -0.95 -58.88 13.96 21.45 0.30 -58.58 16 11 Si 0.95 42.01 27.47 68.60 1.88 43.90 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 13 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 14 H -0.23 -8.56 6.54 99.48 0.65 -7.91 16 15 C 0.53 18.94 7.61 86.37 0.66 19.59 16 16 O -0.59 -26.87 15.81 -4.33 -0.07 -26.94 16 17 C -0.20 -4.89 8.62 23.62 0.20 -4.68 16 18 C -0.02 -0.41 9.48 23.84 0.23 -0.19 16 19 C -0.13 -2.47 5.88 -20.05 -0.12 -2.59 16 20 C -0.06 -0.90 9.95 22.78 0.23 -0.68 16 21 C -0.17 -1.97 10.09 22.32 0.23 -1.74 16 22 C 0.09 1.36 11.17 84.71 0.95 2.31 16 23 N -0.51 -10.39 10.34 -194.50 -2.01 -12.40 16 24 C 0.10 2.02 10.59 85.10 0.90 2.92 16 25 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.09 2.26 8.07 -2.39 -0.02 2.24 16 28 H 0.10 1.96 6.09 -2.39 -0.01 1.94 16 29 H 0.06 2.32 7.13 -2.39 -0.02 2.31 16 30 H 0.03 1.25 6.85 -2.39 -0.02 1.24 16 31 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 32 H 0.16 2.72 4.25 -2.91 -0.01 2.71 16 33 H 0.13 3.20 7.52 -2.91 -0.02 3.18 16 34 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 35 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 36 H 0.18 1.51 8.06 -2.91 -0.02 1.48 16 37 H 0.17 2.68 6.19 -2.91 -0.02 2.66 16 Total: -1.00 -80.90 331.81 5.81 -75.09 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 1.04 Total: 8.63 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 6.34 Total: 5.38 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -3.38 Total: -106.07 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.07 Total: -26.94 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.88 Total: 43.90 kcal Total: -80.90 5.81 -75.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049377354.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.519 kcal (2) G-P(sol) polarization free energy of solvation -80.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds