Wall clock time and date at job start Tue Mar 31 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99969 * 2 1 4 4 H 1.48505 * 109.47140 * 269.99962 * 3 2 1 5 5 H 1.48499 * 109.47639 * 30.00248 * 3 2 1 6 6 H 1.48501 * 109.46849 * 150.00302 * 3 2 1 7 7 C 1.37874 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99925 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00045 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47371 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00243 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47401 * 179.97438 * 11 10 9 13 13 C 1.38271 * 119.93770 * 89.99823 * 12 11 10 14 14 C 1.38143 * 120.05167 * 180.02562 * 13 12 11 15 15 C 1.38749 * 119.94371 * 359.97438 * 14 13 12 16 16 O 1.35901 * 120.05474 * 179.72414 * 15 14 13 17 17 C 1.35668 * 117.99956 * 71.35171 * 16 15 14 18 18 C 1.39128 * 120.07377 * 185.74773 * 17 16 15 19 19 N 1.31972 * 119.90730 * 179.73397 * 18 17 16 20 20 C 1.32238 * 120.07134 * 0.54254 * 19 18 17 21 21 C 1.38196 * 120.15195 * 359.71124 * 20 19 18 22 22 N 1.32236 * 120.08163 * 0.02562 * 21 20 19 23 23 C 1.38742 * 119.88563 * 0.02562 * 15 14 13 24 24 C 1.38141 * 119.94755 * 359.97438 * 23 15 14 25 25 H 0.97009 * 119.99904 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47351 * 59.99423 * 9 7 2 27 27 H 1.09002 * 109.46952 * 299.99450 * 9 7 2 28 28 H 1.00904 * 110.99931 * 56.04130 * 10 9 7 29 29 H 1.09000 * 109.46918 * 60.00038 * 11 10 9 30 30 H 1.08999 * 109.46868 * 300.00320 * 11 10 9 31 31 H 1.07994 * 119.97370 * 0.02562 * 13 12 11 32 32 H 1.07998 * 120.02456 * 179.97438 * 14 13 12 33 33 H 1.07987 * 120.04157 * 0.02562 * 18 17 16 34 34 H 1.07998 * 119.92749 * 179.69067 * 20 19 18 35 35 H 1.07998 * 119.96136 * 180.02562 * 21 20 19 36 36 H 1.08002 * 120.02913 * 179.97438 * 23 15 14 37 37 H 1.07993 * 119.97444 * 180.02562 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 7 4.0011 -2.5791 -0.0001 11 6 5.4696 -2.6184 -0.0001 12 6 5.9338 -4.0521 0.0004 13 6 6.1463 -4.7091 -1.1976 14 6 6.5713 -6.0235 -1.1999 15 6 6.7855 -6.6842 0.0013 16 8 7.1982 -7.9790 0.0017 17 6 8.4721 -8.2416 -0.3844 18 6 8.9037 -9.5577 -0.5153 19 7 10.1419 -9.8094 -0.8961 20 6 10.9749 -8.8123 -1.1427 21 6 10.5506 -7.5040 -1.0085 22 7 9.3097 -7.2449 -0.6323 23 6 6.5715 -6.0226 1.2019 24 6 6.1465 -4.7082 1.1988 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6808 0.8905 27 1 3.8751 -0.6798 -0.8895 28 1 3.6258 -3.0953 -0.7817 29 1 5.8465 -2.1146 0.8899 30 1 5.8464 -2.1144 -0.8901 31 1 5.9798 -4.1942 -2.1322 32 1 6.7367 -6.5363 -2.1358 33 1 8.2249 -10.3722 -0.3101 34 1 11.9892 -9.0210 -1.4494 35 1 11.2334 -6.6921 -1.2110 36 1 6.7371 -6.5348 2.1382 37 1 5.9802 -4.1927 2.1331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425963796.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:50 Heat of formation + Delta-G solvation = 53.313507 kcal Electronic energy + Delta-G solvation = -20495.478000 eV Core-core repulsion = 17238.861073 eV Total energy + Delta-G solvation = -3256.616927 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.78984 -40.07321 -38.23316 -35.35680 -34.47507 -32.61610 -31.60382 -31.03724 -30.34487 -27.44895 -25.48810 -24.71915 -23.79196 -22.87987 -21.32695 -21.07689 -19.20517 -18.32232 -17.22925 -16.97594 -16.62432 -16.10866 -15.49974 -15.20565 -14.94692 -14.56145 -14.26257 -13.88811 -13.78081 -13.46570 -13.32992 -13.08359 -12.62183 -12.22178 -12.13758 -11.94637 -11.74387 -11.52525 -11.29333 -10.93893 -10.72738 -10.42128 -9.85719 -9.65548 -9.32785 -9.25201 -8.97914 -8.63730 -8.54632 -7.55502 -6.08335 -4.06791 0.39561 0.69539 1.05087 1.37169 2.63746 3.26078 3.27696 3.33940 3.35984 3.68201 3.74683 3.86395 4.10770 4.39272 4.66686 4.80550 4.81924 4.89557 4.92287 5.06574 5.23068 5.29656 5.38258 5.41206 5.47020 5.75362 5.82912 5.99236 6.04589 6.26492 6.29118 6.65162 6.67158 6.74712 6.80345 6.95462 7.12223 7.37977 7.55326 7.82148 8.25108 8.60800 8.99790 9.52948 11.04886 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.047441 B = 0.002584 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.066436 B =10835.335644 C =11076.514076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.517 4.517 8 H 0.079 0.921 9 C 0.164 3.836 10 N -0.674 5.674 11 C 0.090 3.910 12 C -0.060 4.060 13 C -0.101 4.101 14 C -0.115 4.115 15 C 0.075 3.925 16 O -0.237 6.237 17 C 0.273 3.727 18 C 0.044 3.956 19 N -0.405 5.405 20 C 0.003 3.997 21 C 0.095 3.905 22 N -0.482 5.482 23 C -0.113 4.113 24 C -0.085 4.085 25 H 0.264 0.736 26 H 0.028 0.972 27 H -0.019 1.019 28 H 0.337 0.663 29 H 0.076 0.924 30 H 0.031 0.969 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.178 0.822 34 H 0.173 0.827 35 H 0.174 0.826 36 H 0.127 0.873 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.667 -16.103 -2.011 27.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.097 0.903 9 C 0.036 3.964 10 N -0.304 5.304 11 C -0.040 4.040 12 C -0.060 4.060 13 C -0.120 4.120 14 C -0.133 4.133 15 C 0.033 3.967 16 O -0.141 6.141 17 C 0.092 3.908 18 C -0.119 4.119 19 N -0.120 5.120 20 C -0.156 4.156 21 C -0.064 4.064 22 N -0.210 5.210 23 C -0.131 4.131 24 C -0.103 4.103 25 H 0.074 0.926 26 H 0.046 0.954 27 H -0.002 1.002 28 H 0.154 0.846 29 H 0.094 0.906 30 H 0.049 0.951 31 H 0.145 0.855 32 H 0.138 0.862 33 H 0.195 0.805 34 H 0.190 0.810 35 H 0.191 0.809 36 H 0.145 0.855 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 22.224 -16.196 -1.237 27.528 hybrid contribution 0.581 1.390 -0.988 1.802 sum 22.805 -14.806 -2.225 27.281 Atomic orbital electron populations 1.69903 1.06166 1.26920 1.50818 1.24913 0.94771 0.98972 0.94711 0.86809 0.80322 0.83819 0.78447 1.20343 1.21113 1.19147 1.21044 0.88847 0.94870 1.50766 0.90251 1.20042 0.96757 0.84702 0.94885 1.60574 1.03265 1.16909 1.49682 1.20953 0.91279 0.90806 1.00919 1.20092 0.96392 0.96748 0.92817 1.20924 0.99217 0.93688 0.98184 1.21118 1.00409 0.95030 0.96775 1.18481 1.01866 0.82492 0.93872 1.84694 1.22863 1.26295 1.80255 1.21270 0.85581 0.91553 0.92380 1.22928 0.94035 0.93985 1.01001 1.68487 1.01861 1.35226 1.06435 1.23620 1.01076 0.89713 1.01164 1.23605 0.91518 0.97828 0.93448 1.68219 1.04504 1.34848 1.13441 1.21052 1.01032 0.94343 0.96707 1.20932 0.97711 0.93225 0.98477 0.92603 0.95431 1.00179 0.84560 0.90561 0.95072 0.85529 0.86193 0.80482 0.80971 0.80943 0.85468 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -14.77 9.87 -34.44 -0.34 -15.11 16 8 H 0.08 2.47 8.06 -52.48 -0.42 2.04 16 9 C 0.16 3.93 4.51 -4.98 -0.02 3.91 16 10 N -0.67 -13.75 6.48 -116.34 -0.75 -14.51 16 11 C 0.09 1.46 5.81 -4.98 -0.03 1.43 16 12 C -0.06 -0.87 5.39 -104.60 -0.56 -1.43 16 13 C -0.10 -1.35 9.69 -39.60 -0.38 -1.73 16 14 C -0.11 -1.47 9.50 -39.43 -0.37 -1.85 16 15 C 0.07 0.98 5.23 -39.21 -0.21 0.78 16 16 O -0.24 -2.91 9.98 -2.90 -0.03 -2.94 16 17 C 0.27 2.99 7.34 -16.92 -0.12 2.87 16 18 C 0.04 0.40 11.18 -17.16 -0.19 0.21 16 19 N -0.41 -3.68 10.49 -12.93 -0.14 -3.82 16 20 C 0.00 0.02 11.21 -17.39 -0.20 -0.18 16 21 C 0.10 0.72 11.22 -17.39 -0.20 0.52 16 22 N -0.48 -5.25 9.25 -13.12 -0.12 -5.37 16 23 C -0.11 -1.45 9.99 -39.43 -0.39 -1.84 16 24 C -0.08 -1.15 9.69 -39.60 -0.38 -1.54 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 27 H -0.02 -0.46 7.57 -51.93 -0.39 -0.85 16 28 H 0.34 6.75 8.71 -39.29 -0.34 6.40 16 29 H 0.08 1.21 8.08 -51.93 -0.42 0.79 16 30 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 326.91 15.07 4.93 4.93 Total: -1.00 -32.91 326.91 -8.01 -40.92 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.50 Total: 2.95 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -3.50 Total: -12.08 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.24 Total: -50.54 kcal Atomic # 8 Polarization: -2.91 SS G_CDS: -0.03 Total: -2.94 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.91 -8.01 -40.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425963796.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.232 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds