Wall clock time and date at job start Tue Mar 31 2020 06:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99969 * 2 1 4 4 H 1.48505 * 109.47140 * 269.99962 * 3 2 1 5 5 H 1.48499 * 109.47639 * 30.00248 * 3 2 1 6 6 H 1.48501 * 109.46849 * 150.00302 * 3 2 1 7 7 C 1.37874 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99925 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00045 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47371 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00243 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47401 * 179.97438 * 11 10 9 13 13 C 1.38271 * 119.93770 * 89.99823 * 12 11 10 14 14 C 1.38143 * 120.05167 * 180.02562 * 13 12 11 15 15 C 1.38749 * 119.94371 * 359.97438 * 14 13 12 16 16 O 1.35901 * 120.05474 * 179.72414 * 15 14 13 17 17 C 1.35668 * 117.99956 * 71.35171 * 16 15 14 18 18 C 1.39128 * 120.07377 * 185.74773 * 17 16 15 19 19 N 1.31972 * 119.90730 * 179.73397 * 18 17 16 20 20 C 1.32238 * 120.07134 * 0.54254 * 19 18 17 21 21 C 1.38196 * 120.15195 * 359.71124 * 20 19 18 22 22 N 1.32236 * 120.08163 * 0.02562 * 21 20 19 23 23 C 1.38742 * 119.88563 * 0.02562 * 15 14 13 24 24 C 1.38141 * 119.94755 * 359.97438 * 23 15 14 25 25 H 0.97009 * 119.99904 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47351 * 59.99423 * 9 7 2 27 27 H 1.09002 * 109.46952 * 299.99450 * 9 7 2 28 28 H 1.00904 * 110.99931 * 56.04130 * 10 9 7 29 29 H 1.09000 * 109.46918 * 60.00038 * 11 10 9 30 30 H 1.08999 * 109.46868 * 300.00320 * 11 10 9 31 31 H 1.07994 * 119.97370 * 0.02562 * 13 12 11 32 32 H 1.07998 * 120.02456 * 179.97438 * 14 13 12 33 33 H 1.07987 * 120.04157 * 0.02562 * 18 17 16 34 34 H 1.07998 * 119.92749 * 179.69067 * 20 19 18 35 35 H 1.07998 * 119.96136 * 180.02562 * 21 20 19 36 36 H 1.08002 * 120.02913 * 179.97438 * 23 15 14 37 37 H 1.07993 * 119.97444 * 180.02562 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 7 4.0011 -2.5791 -0.0001 11 6 5.4696 -2.6184 -0.0001 12 6 5.9338 -4.0521 0.0004 13 6 6.1463 -4.7091 -1.1976 14 6 6.5713 -6.0235 -1.1999 15 6 6.7855 -6.6842 0.0013 16 8 7.1982 -7.9790 0.0017 17 6 8.4721 -8.2416 -0.3844 18 6 8.9037 -9.5577 -0.5153 19 7 10.1419 -9.8094 -0.8961 20 6 10.9749 -8.8123 -1.1427 21 6 10.5506 -7.5040 -1.0085 22 7 9.3097 -7.2449 -0.6323 23 6 6.5715 -6.0226 1.2019 24 6 6.1465 -4.7082 1.1988 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6808 0.8905 27 1 3.8751 -0.6798 -0.8895 28 1 3.6258 -3.0953 -0.7817 29 1 5.8465 -2.1146 0.8899 30 1 5.8464 -2.1144 -0.8901 31 1 5.9798 -4.1942 -2.1322 32 1 6.7367 -6.5363 -2.1358 33 1 8.2249 -10.3722 -0.3101 34 1 11.9892 -9.0210 -1.4494 35 1 11.2334 -6.6921 -1.2110 36 1 6.7371 -6.5348 2.1382 37 1 5.9802 -4.1927 2.1331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425963796.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:49 Heat of formation + Delta-G solvation = 28.967935 kcal Electronic energy + Delta-G solvation = -20496.533703 eV Core-core repulsion = 17238.861073 eV Total energy + Delta-G solvation = -3257.672630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.51525 -40.94040 -39.22369 -36.91869 -35.15636 -34.61106 -32.58875 -32.04377 -31.46700 -29.10839 -26.50171 -25.48667 -24.87364 -23.88330 -23.09999 -22.27303 -20.07397 -19.04878 -19.00478 -17.80224 -17.62413 -17.16647 -16.69730 -16.19974 -16.12750 -15.66674 -15.57649 -15.45462 -14.93500 -14.53381 -14.44633 -14.09401 -13.88287 -13.82150 -13.29533 -13.20693 -12.83465 -12.67723 -12.55617 -12.28491 -12.05632 -11.85804 -11.80282 -11.48363 -10.82072 -10.31073 -9.99508 -9.97559 -9.57467 -9.14757 -8.30076 -6.35180 -0.24308 -0.02085 0.10637 0.36257 1.35597 1.38070 1.49285 1.79103 2.34470 2.63797 2.71530 3.02909 3.03989 3.32892 3.46161 3.62472 3.80590 3.89645 3.93744 4.17350 4.23711 4.31557 4.37489 4.51303 4.60715 4.64005 4.73292 4.79971 5.01169 5.05449 5.14823 5.26638 5.30150 5.50852 5.62692 5.71327 5.92191 6.16399 6.27053 6.52718 6.62361 6.69916 6.74574 7.29730 8.86752 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.047441 B = 0.002584 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.066436 B =10835.335644 C =11076.514076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.006 3.994 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.247 1.247 7 C -0.530 4.530 8 H 0.035 0.965 9 C 0.174 3.826 10 N -0.684 5.684 11 C 0.095 3.905 12 C -0.077 4.077 13 C -0.101 4.101 14 C -0.120 4.120 15 C 0.076 3.924 16 O -0.248 6.248 17 C 0.248 3.752 18 C 0.041 3.959 19 N -0.423 5.423 20 C 0.016 3.984 21 C 0.093 3.907 22 N -0.507 5.507 23 C -0.120 4.120 24 C -0.089 4.089 25 H 0.268 0.732 26 H 0.029 0.971 27 H -0.010 1.010 28 H 0.336 0.664 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.138 0.862 32 H 0.129 0.871 33 H 0.193 0.807 34 H 0.210 0.790 35 H 0.206 0.794 36 H 0.142 0.858 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.772 -15.831 -2.432 30.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.192 4.192 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.568 4.568 8 H 0.053 0.947 9 C 0.046 3.954 10 N -0.315 5.315 11 C -0.034 4.034 12 C -0.077 4.077 13 C -0.120 4.120 14 C -0.138 4.138 15 C 0.034 3.966 16 O -0.153 6.153 17 C 0.069 3.931 18 C -0.120 4.120 19 N -0.138 5.138 20 C -0.143 4.143 21 C -0.067 4.067 22 N -0.236 5.236 23 C -0.138 4.138 24 C -0.108 4.108 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.008 0.992 28 H 0.154 0.846 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.156 0.844 32 H 0.147 0.853 33 H 0.209 0.791 34 H 0.227 0.773 35 H 0.222 0.778 36 H 0.159 0.841 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 25.343 -15.962 -1.655 29.997 hybrid contribution -0.279 1.122 -0.891 1.459 sum 25.065 -14.840 -2.546 29.240 Atomic orbital electron populations 1.70066 1.08277 1.28272 1.52270 1.25928 0.95679 1.03480 0.94098 0.85613 0.79404 0.78064 0.79205 1.19077 1.20756 1.17040 1.21339 0.91485 0.93381 1.50574 0.94689 1.19788 0.93604 0.86901 0.95122 1.60450 1.06230 1.14843 1.49976 1.20942 0.88379 0.92385 1.01661 1.19971 0.98068 0.96038 0.93631 1.21057 0.98698 0.93903 0.98314 1.21238 1.00379 0.94955 0.97254 1.18645 1.01083 0.82881 0.94023 1.84638 1.24046 1.25634 1.80971 1.21382 0.85204 0.92302 0.94227 1.23154 0.94486 0.93744 1.00635 1.68572 1.02009 1.36105 1.07160 1.24269 1.02122 0.89083 0.98799 1.24202 0.90794 0.99259 0.92408 1.68178 1.05859 1.35431 1.14087 1.21221 1.00935 0.94205 0.97438 1.21058 0.97533 0.93618 0.98546 0.92342 0.95260 0.99237 0.84638 0.90060 0.93900 0.84401 0.85277 0.79060 0.77294 0.77785 0.84056 0.84260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.61 13.96 21.45 0.30 -59.31 16 2 C 0.01 0.32 5.47 84.65 0.46 0.79 16 3 Si 0.95 43.69 27.47 68.60 1.88 45.57 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.25 -10.44 6.54 99.48 0.65 -9.79 16 7 C -0.53 -30.85 9.87 25.60 0.25 -30.60 16 8 H 0.03 2.28 8.06 -2.91 -0.02 2.25 16 9 C 0.17 8.22 4.51 85.56 0.39 8.60 16 10 N -0.68 -27.70 6.48 -521.99 -3.38 -31.08 16 11 C 0.09 2.97 5.81 85.56 0.50 3.46 16 12 C -0.08 -2.15 5.39 -19.85 -0.11 -2.25 16 13 C -0.10 -2.60 9.69 22.25 0.22 -2.38 16 14 C -0.12 -2.99 9.50 22.37 0.21 -2.77 16 15 C 0.08 1.95 5.23 22.51 0.12 2.07 16 16 O -0.25 -6.01 9.98 -33.30 -0.33 -6.34 16 17 C 0.25 5.25 7.34 84.80 0.62 5.87 16 18 C 0.04 0.71 11.18 84.89 0.95 1.66 16 19 N -0.42 -6.88 10.49 -194.81 -2.04 -8.93 16 20 C 0.02 0.18 11.21 84.62 0.95 1.13 16 21 C 0.09 1.16 11.22 84.62 0.95 2.11 16 22 N -0.51 -10.34 9.25 -308.16 -2.85 -13.19 16 23 C -0.12 -2.99 9.99 22.37 0.22 -2.77 16 24 C -0.09 -2.36 9.69 22.25 0.22 -2.14 16 25 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 26 H 0.03 1.38 7.20 -2.39 -0.02 1.36 16 27 H -0.01 -0.45 7.57 -2.39 -0.02 -0.47 16 28 H 0.34 13.56 8.71 -89.69 -0.78 12.78 16 29 H 0.08 2.44 8.08 -2.39 -0.02 2.42 16 30 H 0.04 1.25 8.08 -2.39 -0.02 1.23 16 31 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 32 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 33 H 0.19 2.47 8.06 -2.92 -0.02 2.45 16 34 H 0.21 0.58 8.06 -2.91 -0.02 0.56 16 35 H 0.21 1.06 8.06 -2.91 -0.02 1.03 16 36 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 37 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -72.11 326.91 -0.23 -72.34 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.25 Total: 18.16 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: 5.95 Total: -17.22 kcal Atomic # 7 Polarization: -104.53 SS G_CDS: -7.98 Total: -112.51 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.33 Total: -6.34 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.88 Total: 45.57 kcal Total: -72.11 -0.23 -72.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425963796.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.308 kcal (2) G-P(sol) polarization free energy of solvation -72.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds