Wall clock time and date at job start Tue Mar 31 2020 06:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00198 * 2 1 4 4 H 1.48503 * 109.47301 * 265.00298 * 3 2 1 5 5 H 1.48507 * 109.46764 * 25.00267 * 3 2 1 6 6 H 1.48495 * 109.47326 * 145.00135 * 3 2 1 7 7 C 1.37879 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00255 * 185.05526 * 7 2 1 9 9 C 1.50700 * 119.99742 * 5.05706 * 7 2 1 10 10 O 1.42899 * 110.87513 * 60.75169 * 9 7 2 11 11 C 1.55143 * 110.99332 * 296.91009 * 9 7 2 12 12 C 1.54315 * 103.02267 * 206.25693 * 11 9 7 13 13 N 1.47449 * 107.23186 * 22.27929 * 12 11 9 14 14 C 1.38499 * 111.00070 * 123.26002 * 13 12 11 15 15 C 1.38769 * 121.13155 * 299.87743 * 14 13 12 16 16 C 1.38703 * 119.78074 * 179.97438 * 15 14 13 17 17 N 1.31475 * 121.91709 * 359.97438 * 16 15 14 18 18 C 1.33383 * 121.49576 * 359.97438 * 17 16 15 19 19 C 1.40775 * 121.94530 * 179.97438 * 18 17 16 20 20 C 1.36152 * 118.77479 * 180.02562 * 19 18 17 21 21 N 1.32577 * 121.92621 * 359.97438 * 20 19 18 22 22 C 1.31411 * 122.58188 * 0.02562 * 21 20 19 23 23 C 1.39966 * 119.87694 * 359.97438 * 22 21 20 24 24 C 1.47842 * 108.56723 * 0.99211 * 13 12 11 25 25 H 0.97003 * 120.00518 * 359.97438 * 1 2 3 26 26 H 0.96705 * 114.00551 * 290.77007 * 10 9 7 27 27 H 1.09001 * 110.71067 * 87.86620 * 11 9 7 28 28 H 1.08999 * 110.85272 * 324.70809 * 11 9 7 29 29 H 1.08999 * 109.88938 * 262.87765 * 12 11 9 30 30 H 1.08998 * 109.89517 * 141.68316 * 12 11 9 31 31 H 1.08007 * 120.11026 * 359.95455 * 15 14 13 32 32 H 1.08003 * 119.04663 * 179.97438 * 16 15 14 33 33 H 1.08002 * 120.61373 * 359.97438 * 19 18 17 34 34 H 1.07996 * 119.04078 * 180.02562 * 20 19 18 35 35 H 1.07991 * 120.06007 * 179.97438 * 22 21 20 36 36 H 1.09005 * 110.37415 * 94.73192 * 24 13 12 37 37 H 1.08999 * 110.37598 * 217.07312 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6023 1.9854 -1.3948 5 1 1.3977 2.6808 0.5918 6 1 3.4898 1.4730 0.8030 7 6 2.0045 -1.1940 -0.0005 8 1 3.0813 -1.1959 0.0819 9 6 1.2554 -2.4965 -0.1162 10 8 0.5274 -2.5579 -1.3442 11 6 0.3139 -2.7060 1.0990 12 6 0.1886 -4.2419 1.1812 13 7 1.3637 -4.8131 0.4978 14 6 2.0692 -5.6537 1.3427 15 6 2.6164 -5.1847 2.5286 16 6 3.3173 -6.0513 3.3541 17 7 3.4838 -7.3193 3.0494 18 6 2.9844 -7.8376 1.9265 19 6 3.1575 -9.1937 1.5906 20 6 2.6204 -9.6546 0.4275 21 7 1.9417 -8.8645 -0.3929 22 6 1.7414 -7.5900 -0.1433 23 6 2.2537 -7.0199 1.0278 24 6 2.2166 -3.7036 0.0210 25 1 -0.4851 0.8400 0.0004 26 1 -0.2210 -1.9471 -1.3889 27 1 -0.6587 -2.2492 0.9163 28 1 0.7607 -2.3066 2.0094 29 1 -0.7245 -4.5667 0.6824 30 1 0.1765 -4.5578 2.2243 31 1 2.4971 -4.1481 2.8076 32 1 3.7385 -5.6735 4.2741 33 1 3.7069 -9.8561 2.2431 34 1 2.7502 -10.6943 0.1658 35 1 1.1826 -6.9835 -0.8406 36 1 2.9979 -3.4856 0.7492 37 1 2.6557 -3.9508 -0.9455 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591975708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:56 Heat of formation + Delta-G solvation = 30.351090 kcal Electronic energy + Delta-G solvation = -22297.599141 eV Core-core repulsion = 19039.986489 eV Total energy + Delta-G solvation = -3257.612652 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.24236 -39.04792 -37.63119 -35.31486 -32.52201 -32.27105 -31.49871 -30.32625 -28.63029 -28.36442 -25.13625 -24.37869 -24.02470 -22.15061 -20.44788 -19.81618 -18.43116 -17.56652 -17.32146 -16.73602 -15.46306 -15.14369 -14.97986 -14.71560 -14.52294 -14.34102 -14.02499 -13.84058 -13.21356 -12.89948 -12.74806 -12.63481 -12.18620 -12.07361 -11.70718 -11.38883 -11.25548 -10.93647 -10.61373 -10.49821 -10.28632 -9.97699 -9.82478 -9.44705 -9.36137 -9.24653 -8.73116 -8.31023 -8.24024 -8.13605 -6.32214 -4.40383 0.24303 0.77275 1.87206 3.04838 3.16741 3.23964 3.26098 3.97632 4.11128 4.19944 4.23649 4.47431 4.69916 4.80764 4.88881 4.95016 5.17488 5.26670 5.45228 5.55906 5.62718 5.69429 5.77236 5.83855 5.92901 5.93743 6.17057 6.19885 6.37879 6.45524 6.61363 6.68986 6.82993 7.10171 7.24244 7.31786 7.57379 7.69155 7.83495 7.98734 8.01324 8.61208 9.27505 9.34123 10.74859 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.029140 B = 0.004491 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.648081 B = 6233.314104 C = 6678.103427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.076 3.924 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.256 3.744 10 O -0.576 6.576 11 C -0.144 4.144 12 C 0.047 3.953 13 N -0.505 5.505 14 C 0.204 3.796 15 C -0.228 4.228 16 C 0.164 3.836 17 N -0.498 5.498 18 C 0.164 3.836 19 C -0.159 4.159 20 C 0.092 3.908 21 N -0.503 5.503 22 C 0.190 3.810 23 C -0.159 4.159 24 C 0.063 3.937 25 H 0.267 0.733 26 H 0.377 0.623 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.144 0.856 32 H 0.160 0.840 33 H 0.141 0.859 34 H 0.155 0.845 35 H 0.177 0.823 36 H 0.057 0.943 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.613 -11.144 4.973 12.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.127 4.127 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.577 4.577 8 H 0.080 0.920 9 C 0.216 3.784 10 O -0.383 6.383 11 C -0.183 4.183 12 C -0.078 4.078 13 N -0.227 5.227 14 C 0.098 3.902 15 C -0.250 4.250 16 C -0.008 4.008 17 N -0.207 5.207 18 C 0.036 3.964 19 C -0.180 4.180 20 C -0.052 4.052 21 N -0.212 5.212 22 C 0.018 3.982 23 C -0.164 4.164 24 C -0.061 4.061 25 H 0.077 0.923 26 H 0.225 0.775 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.162 0.838 32 H 0.177 0.823 33 H 0.159 0.841 34 H 0.172 0.828 35 H 0.194 0.806 36 H 0.076 0.924 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.910 -12.924 4.190 13.894 hybrid contribution 0.207 2.837 1.220 3.095 sum 3.117 -10.087 5.410 11.863 Atomic orbital electron populations 1.69754 1.05970 1.27597 1.49713 1.24958 0.94958 0.99429 0.93388 0.86493 0.79735 0.82535 0.78555 1.20258 1.21118 1.19866 1.21444 0.93846 0.90608 1.51846 0.92036 1.19499 0.87212 0.90349 0.81389 1.86172 1.47908 1.65281 1.38987 1.23343 1.03153 0.90720 1.01054 1.23039 0.92048 0.97052 0.95661 1.60927 1.07867 1.19507 1.34385 1.19440 0.89282 0.91742 0.89770 1.22915 1.02454 1.02639 0.96993 1.22874 0.91658 0.88304 0.97942 1.68053 1.21280 1.14140 1.17204 1.18897 0.93154 0.94179 0.90130 1.21598 1.03347 0.93847 0.99212 1.22266 0.92996 0.99766 0.90151 1.67694 1.15495 1.05655 1.32322 1.23350 0.91703 0.90199 0.92902 1.19742 1.03344 0.94439 0.98894 1.23263 0.94852 0.88393 0.99605 0.92268 0.77463 0.89728 0.92106 0.90604 0.93719 0.83822 0.82265 0.84097 0.82757 0.80642 0.92442 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.45 10.85 55.43 0.60 -21.85 16 2 C 0.08 1.90 5.32 -17.82 -0.09 1.80 16 3 Si 0.90 19.77 29.54 -169.99 -5.02 14.75 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 7 C -0.54 -13.53 8.26 -34.44 -0.28 -13.82 16 8 H 0.06 1.54 7.79 -52.49 -0.41 1.13 16 9 C 0.26 5.82 0.86 -89.63 -0.08 5.75 16 10 O -0.58 -13.94 13.14 -35.23 -0.46 -14.40 16 11 C -0.14 -2.97 5.33 -24.91 -0.13 -3.10 16 12 C 0.05 0.83 6.57 -2.83 -0.02 0.82 16 13 N -0.51 -8.98 4.45 -167.53 -0.75 -9.73 16 14 C 0.20 3.32 4.63 -83.45 -0.39 2.93 16 15 C -0.23 -3.34 7.91 -39.21 -0.31 -3.65 16 16 C 0.16 2.17 11.12 -17.53 -0.20 1.98 16 17 N -0.50 -7.41 10.36 -11.04 -0.11 -7.52 16 18 C 0.16 2.50 6.63 -84.88 -0.56 1.94 16 19 C -0.16 -2.05 10.08 -39.37 -0.40 -2.44 16 20 C 0.09 1.15 11.06 -17.98 -0.20 0.95 16 21 N -0.50 -7.42 10.32 -13.25 -0.14 -7.56 16 22 C 0.19 2.93 10.83 -17.08 -0.19 2.75 16 23 C -0.16 -2.53 5.75 -106.69 -0.61 -3.14 16 24 C 0.06 1.27 5.73 -2.30 -0.01 1.26 16 25 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 26 H 0.38 9.11 7.71 45.56 0.35 9.46 16 27 H 0.08 1.87 7.47 -51.93 -0.39 1.48 16 28 H 0.06 1.28 8.04 -51.93 -0.42 0.86 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.04 0.72 7.04 -51.93 -0.37 0.36 16 31 H 0.14 2.05 7.79 -52.48 -0.41 1.64 16 32 H 0.16 1.56 8.06 -52.48 -0.42 1.13 16 33 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.16 1.38 8.06 -52.49 -0.42 0.95 16 35 H 0.18 2.67 7.66 -52.49 -0.40 2.26 16 36 H 0.06 1.12 6.71 -51.93 -0.35 0.77 16 37 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 309.03 15.07 4.66 4.66 Total: -1.00 -27.10 309.03 -8.33 -35.43 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -3.64 Total: 12.22 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -3.47 Total: -5.99 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -0.39 Total: -46.66 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.46 Total: -14.40 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.10 -8.33 -35.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591975708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.782 kcal (2) G-P(sol) polarization free energy of solvation -27.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds