Wall clock time and date at job start Tue Mar 31 2020 06:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00198 * 2 1 4 4 H 1.48503 * 109.47301 * 265.00298 * 3 2 1 5 5 H 1.48507 * 109.46764 * 25.00267 * 3 2 1 6 6 H 1.48495 * 109.47326 * 145.00135 * 3 2 1 7 7 C 1.37879 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00255 * 185.05526 * 7 2 1 9 9 C 1.50700 * 119.99742 * 5.05706 * 7 2 1 10 10 O 1.42899 * 110.87513 * 60.75169 * 9 7 2 11 11 C 1.55143 * 110.99332 * 296.91009 * 9 7 2 12 12 C 1.54315 * 103.02267 * 206.25693 * 11 9 7 13 13 N 1.47449 * 107.23186 * 22.27929 * 12 11 9 14 14 C 1.38499 * 111.00070 * 123.26002 * 13 12 11 15 15 C 1.38769 * 121.13155 * 299.87743 * 14 13 12 16 16 C 1.38703 * 119.78074 * 179.97438 * 15 14 13 17 17 N 1.31475 * 121.91709 * 359.97438 * 16 15 14 18 18 C 1.33383 * 121.49576 * 359.97438 * 17 16 15 19 19 C 1.40775 * 121.94530 * 179.97438 * 18 17 16 20 20 C 1.36152 * 118.77479 * 180.02562 * 19 18 17 21 21 N 1.32577 * 121.92621 * 359.97438 * 20 19 18 22 22 C 1.31411 * 122.58188 * 0.02562 * 21 20 19 23 23 C 1.39966 * 119.87694 * 359.97438 * 22 21 20 24 24 C 1.47842 * 108.56723 * 0.99211 * 13 12 11 25 25 H 0.97003 * 120.00518 * 359.97438 * 1 2 3 26 26 H 0.96705 * 114.00551 * 290.77007 * 10 9 7 27 27 H 1.09001 * 110.71067 * 87.86620 * 11 9 7 28 28 H 1.08999 * 110.85272 * 324.70809 * 11 9 7 29 29 H 1.08999 * 109.88938 * 262.87765 * 12 11 9 30 30 H 1.08998 * 109.89517 * 141.68316 * 12 11 9 31 31 H 1.08007 * 120.11026 * 359.95455 * 15 14 13 32 32 H 1.08003 * 119.04663 * 179.97438 * 16 15 14 33 33 H 1.08002 * 120.61373 * 359.97438 * 19 18 17 34 34 H 1.07996 * 119.04078 * 180.02562 * 20 19 18 35 35 H 1.07991 * 120.06007 * 179.97438 * 22 21 20 36 36 H 1.09005 * 110.37415 * 94.73192 * 24 13 12 37 37 H 1.08999 * 110.37598 * 217.07312 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6023 1.9854 -1.3948 5 1 1.3977 2.6808 0.5918 6 1 3.4898 1.4730 0.8030 7 6 2.0045 -1.1940 -0.0005 8 1 3.0813 -1.1959 0.0819 9 6 1.2554 -2.4965 -0.1162 10 8 0.5274 -2.5579 -1.3442 11 6 0.3139 -2.7060 1.0990 12 6 0.1886 -4.2419 1.1812 13 7 1.3637 -4.8131 0.4978 14 6 2.0692 -5.6537 1.3427 15 6 2.6164 -5.1847 2.5286 16 6 3.3173 -6.0513 3.3541 17 7 3.4838 -7.3193 3.0494 18 6 2.9844 -7.8376 1.9265 19 6 3.1575 -9.1937 1.5906 20 6 2.6204 -9.6546 0.4275 21 7 1.9417 -8.8645 -0.3929 22 6 1.7414 -7.5900 -0.1433 23 6 2.2537 -7.0199 1.0278 24 6 2.2166 -3.7036 0.0210 25 1 -0.4851 0.8400 0.0004 26 1 -0.2210 -1.9471 -1.3889 27 1 -0.6587 -2.2492 0.9163 28 1 0.7607 -2.3066 2.0094 29 1 -0.7245 -4.5667 0.6824 30 1 0.1765 -4.5578 2.2243 31 1 2.4971 -4.1481 2.8076 32 1 3.7385 -5.6735 4.2741 33 1 3.7069 -9.8561 2.2431 34 1 2.7502 -10.6943 0.1658 35 1 1.1826 -6.9835 -0.8406 36 1 2.9979 -3.4856 0.7492 37 1 2.6557 -3.9508 -0.9455 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591975708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:56 Heat of formation + Delta-G solvation = 11.822844 kcal Electronic energy + Delta-G solvation = -22298.402586 eV Core-core repulsion = 19039.986489 eV Total energy + Delta-G solvation = -3258.416097 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.39729 -40.45360 -38.81866 -36.94168 -34.20307 -33.83845 -32.61958 -31.52487 -30.06969 -30.02068 -26.81465 -25.58971 -25.15906 -23.45818 -21.82206 -21.53487 -19.57382 -19.14701 -18.48200 -18.17776 -16.94016 -16.84501 -16.46858 -15.84843 -15.80931 -15.64249 -15.41518 -15.02804 -14.58736 -14.40384 -14.05147 -13.92500 -13.68153 -13.57331 -13.20121 -12.98142 -12.91788 -12.67575 -12.31807 -12.24390 -11.94501 -11.30281 -11.15642 -10.93127 -10.64382 -10.51319 -10.36132 -10.11146 -9.56649 -9.37994 -8.22133 -6.36612 -0.88148 -0.31938 0.73791 1.41095 1.44966 1.51515 1.97486 2.37566 2.65749 3.00738 3.04226 3.19175 3.44157 3.58159 3.71794 3.78468 3.81853 3.96114 4.20204 4.25202 4.30269 4.33392 4.38064 4.62049 4.65227 4.77191 4.81022 4.89845 4.96942 5.05249 5.19425 5.31461 5.40808 5.52751 5.63475 5.65510 5.79745 6.15301 6.22732 6.67501 6.73365 6.91551 7.34861 7.42125 8.82984 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.029140 B = 0.004491 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.648081 B = 6233.314104 C = 6678.103427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.038 3.962 3 Si 0.954 3.046 4 H -0.280 1.280 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.561 4.561 8 H 0.054 0.946 9 C 0.241 3.759 10 O -0.586 6.586 11 C -0.131 4.131 12 C 0.057 3.943 13 N -0.503 5.503 14 C 0.180 3.820 15 C -0.224 4.224 16 C 0.169 3.831 17 N -0.503 5.503 18 C 0.145 3.855 19 C -0.154 4.154 20 C 0.092 3.908 21 N -0.514 5.514 22 C 0.175 3.825 23 C -0.169 4.169 24 C 0.074 3.926 25 H 0.268 0.732 26 H 0.373 0.627 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.147 0.853 32 H 0.198 0.802 33 H 0.168 0.832 34 H 0.193 0.807 35 H 0.168 0.832 36 H 0.061 0.939 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.590 -12.375 6.278 14.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.164 4.164 3 Si 0.780 3.220 4 H -0.206 1.206 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.599 4.599 8 H 0.073 0.927 9 C 0.201 3.799 10 O -0.393 6.393 11 C -0.170 4.170 12 C -0.068 4.068 13 N -0.224 5.224 14 C 0.074 3.926 15 C -0.246 4.246 16 C -0.003 4.003 17 N -0.212 5.212 18 C 0.018 3.982 19 C -0.174 4.174 20 C -0.052 4.052 21 N -0.222 5.222 22 C 0.004 3.996 23 C -0.174 4.174 24 C -0.051 4.051 25 H 0.078 0.922 26 H 0.221 0.779 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.164 0.836 32 H 0.214 0.786 33 H 0.185 0.815 34 H 0.210 0.790 35 H 0.185 0.815 36 H 0.080 0.920 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.887 -14.172 5.495 15.689 hybrid contribution -0.059 3.142 0.830 3.250 sum 3.827 -11.031 6.325 13.279 Atomic orbital electron populations 1.69833 1.06697 1.28120 1.49784 1.25569 0.95714 1.01896 0.93172 0.85647 0.78797 0.79408 0.78191 1.20584 1.20683 1.19494 1.21719 0.93795 0.92087 1.52345 0.92739 1.19690 0.87968 0.90763 0.81504 1.86164 1.47871 1.65105 1.40143 1.23095 1.01434 0.92776 0.99705 1.22927 0.92288 0.94775 0.96830 1.60761 1.07679 1.18609 1.35338 1.19473 0.90713 0.91853 0.90525 1.23004 1.02073 1.02997 0.96486 1.23412 0.90635 0.87573 0.98688 1.68139 1.21289 1.14773 1.17021 1.19275 0.93378 0.95235 0.90274 1.21928 1.02798 0.93167 0.99524 1.22856 0.91766 1.01029 0.89567 1.67707 1.15864 1.05508 1.33160 1.23249 0.92584 0.90713 0.93068 1.19799 1.03894 0.94376 0.99340 1.23038 0.94551 0.88199 0.99329 0.92224 0.77937 0.91561 0.92747 0.90428 0.91865 0.83560 0.78560 0.81485 0.79049 0.81451 0.92039 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.01 10.85 21.45 0.23 -45.78 16 2 C 0.04 1.91 5.32 84.66 0.45 2.36 16 3 Si 0.95 40.49 29.54 68.60 2.03 42.52 16 4 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 7 C -0.56 -28.51 8.26 25.60 0.21 -28.30 16 8 H 0.05 2.77 7.79 -2.91 -0.02 2.74 16 9 C 0.24 11.14 0.86 -10.15 -0.01 11.13 16 10 O -0.59 -29.05 13.14 -148.98 -1.96 -31.00 16 11 C -0.13 -5.47 5.33 31.77 0.17 -5.30 16 12 C 0.06 2.00 6.57 86.64 0.57 2.57 16 13 N -0.50 -17.86 4.45 -683.93 -3.04 -20.90 16 14 C 0.18 5.74 4.63 39.00 0.18 5.92 16 15 C -0.22 -6.20 7.91 22.51 0.18 -6.02 16 16 C 0.17 4.04 11.12 84.86 0.94 4.98 16 17 N -0.50 -13.71 10.36 -188.85 -1.96 -15.67 16 18 C 0.15 4.15 6.63 40.40 0.27 4.42 16 19 C -0.15 -3.53 10.08 22.40 0.23 -3.30 16 20 C 0.09 2.04 11.06 84.09 0.93 2.97 16 21 N -0.51 -14.51 10.32 -195.85 -2.02 -16.53 16 22 C 0.18 5.35 10.83 85.17 0.92 6.28 16 23 C -0.17 -5.23 5.75 -21.21 -0.12 -5.35 16 24 C 0.07 3.00 5.73 86.77 0.50 3.50 16 25 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 26 H 0.37 18.59 7.71 -74.05 -0.57 18.02 16 27 H 0.07 2.99 7.47 -2.39 -0.02 2.97 16 28 H 0.05 2.30 8.04 -2.39 -0.02 2.28 16 29 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.06 1.98 7.04 -2.39 -0.02 1.96 16 31 H 0.15 3.96 7.79 -2.91 -0.02 3.93 16 32 H 0.20 3.10 8.06 -2.91 -0.02 3.08 16 33 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 34 H 0.19 2.69 8.06 -2.91 -0.02 2.66 16 35 H 0.17 5.22 7.66 -2.92 -0.02 5.20 16 36 H 0.06 2.40 6.71 -2.38 -0.02 2.38 16 37 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -57.61 309.03 -0.77 -58.38 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: 0.53 Total: 33.11 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 5.42 Total: -4.13 kcal Atomic # 7 Polarization: -92.09 SS G_CDS: -6.79 Total: -98.87 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -1.96 Total: -31.00 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -57.61 -0.77 -58.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591975708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.199 kcal (2) G-P(sol) polarization free energy of solvation -57.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds