Wall clock time and date at job start Tue Mar 31 2020 06:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86802 * 119.99927 * 2 1 4 4 H 1.48509 * 109.46965 * 87.22186 * 3 2 1 5 5 H 1.48499 * 109.47061 * 207.21814 * 3 2 1 6 6 H 1.48502 * 109.47123 * 327.22284 * 3 2 1 7 7 C 1.40267 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00188 * 10.51043 * 7 2 1 9 9 C 1.40891 * 120.00197 * 190.50733 * 7 2 1 10 10 C 1.40711 * 120.32596 * 36.33258 * 9 7 2 11 11 C 1.37597 * 119.87929 * 180.02562 * 10 9 7 12 12 C 1.38824 * 120.57318 * 359.97438 * 11 10 9 13 13 C 1.38228 * 120.67423 * 0.02562 * 12 11 10 14 14 C 1.39222 * 120.09079 * 359.71805 * 13 12 11 15 15 C 1.47433 * 120.27950 * 180.27937 * 14 13 12 16 16 O 1.21617 * 119.99806 * 175.66724 * 15 14 13 17 17 N 1.34775 * 120.00159 * 355.67294 * 15 14 13 18 18 C 1.46504 * 120.00020 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47327 * 179.97438 * 18 17 15 20 20 C 1.50693 * 109.47293 * 180.02562 * 19 18 17 21 21 N 1.30494 * 125.65370 * 304.69615 * 20 19 18 22 22 C 1.34127 * 109.25963 * 179.89193 * 21 20 19 23 23 C 1.34664 * 108.02167 * 0.37098 * 22 21 20 24 24 N 1.35045 * 125.64951 * 125.00107 * 20 19 18 25 25 H 0.97000 * 126.39461 * 359.97438 * 24 20 19 26 26 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.05741 * 359.97438 * 10 9 7 28 28 H 1.08000 * 119.71536 * 179.97438 * 11 10 9 29 29 H 1.08003 * 119.66168 * 179.97438 * 12 11 10 30 30 H 1.08001 * 119.95020 * 180.02562 * 13 12 11 31 31 H 0.97001 * 120.00277 * 0.02562 * 17 15 14 32 32 H 1.08992 * 109.47032 * 300.00420 * 18 17 15 33 33 H 1.09004 * 109.46511 * 59.99738 * 18 17 15 34 34 H 1.08994 * 109.47306 * 300.00695 * 19 18 17 35 35 H 1.09004 * 109.46817 * 60.00199 * 19 18 17 36 36 H 1.08007 * 125.99033 * 180.11861 * 22 21 20 37 37 H 1.08002 * 126.59765 * 179.81248 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4290 2.0804 1.3985 5 1 3.5660 1.4239 -0.6404 6 1 1.4683 2.6350 -0.7580 7 6 2.0076 -1.2147 0.0005 8 1 1.4812 -2.1423 -0.1697 9 6 3.3988 -1.2249 0.2231 10 6 3.9796 -0.3209 1.1316 11 6 5.3394 -0.3386 1.3415 12 6 6.1467 -1.2423 0.6643 13 6 5.6008 -2.1406 -0.2334 14 6 4.2277 -2.1507 -0.4631 15 6 3.6403 -3.1111 -1.4150 16 8 2.4334 -3.1692 -1.5533 17 7 4.4407 -3.9247 -2.1317 18 6 3.8569 -4.8795 -3.0772 19 6 4.9747 -5.6742 -3.7552 20 6 4.3742 -6.6559 -4.7282 21 7 3.4751 -7.5573 -4.4420 22 6 3.1735 -8.2490 -5.5508 23 6 3.9197 -7.7630 -6.5610 24 7 4.6816 -6.7522 -6.0397 25 1 5.3228 -6.2072 -6.5221 26 1 -0.4850 0.8401 -0.0004 27 1 3.3593 0.3859 1.6626 28 1 5.7824 0.3567 2.0391 29 1 7.2124 -1.2430 0.8399 30 1 6.2398 -2.8388 -0.7535 31 1 5.4032 -3.8788 -2.0211 32 1 3.1973 -5.5630 -2.5427 33 1 3.2857 -4.3396 -3.8326 34 1 5.6340 -4.9904 -4.2897 35 1 5.5462 -6.2140 -3.0001 36 1 2.4603 -9.0571 -5.6205 37 1 3.9172 -8.1045 -7.5856 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136818259.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:27 Heat of formation + Delta-G solvation = 41.600609 kcal Electronic energy + Delta-G solvation = -21133.292176 eV Core-core repulsion = 17876.167340 eV Total energy + Delta-G solvation = -3257.124836 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.16545 -39.03266 -37.07189 -34.94456 -33.62978 -32.63244 -31.90949 -30.44273 -29.96760 -27.84507 -25.39664 -23.64418 -22.12768 -21.74422 -20.91678 -20.51861 -19.54729 -18.00810 -17.56699 -16.61607 -15.65381 -15.33404 -15.22336 -14.69978 -14.21843 -14.08795 -13.98131 -13.94552 -13.56555 -13.17753 -12.95736 -12.62163 -12.37921 -12.01528 -11.82466 -11.58118 -11.24962 -10.92444 -10.68255 -10.42823 -10.18175 -10.14536 -10.11226 -9.79509 -9.24117 -8.58165 -8.44049 -8.38364 -7.80548 -7.57434 -6.88089 -4.46556 1.86876 2.12364 2.61547 2.89151 3.02046 3.09495 3.18275 3.29445 3.87458 3.96581 4.04387 4.38063 4.62136 4.81873 4.98096 5.04939 5.19769 5.40744 5.44848 5.51054 5.78335 5.89628 5.91738 6.02493 6.11004 6.24684 6.43773 6.52369 6.59873 6.80958 7.08074 7.11502 7.17453 7.24672 7.40499 7.59981 7.77284 7.96850 8.03120 8.33406 8.50251 8.65861 8.89224 9.39435 10.08618 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.022739 B = 0.003770 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.060782 B = 7424.345710 C = 8264.684525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.078 3.922 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.243 1.243 6 H -0.289 1.289 7 C -0.402 4.402 8 H 0.125 0.875 9 C 0.117 3.883 10 C -0.226 4.226 11 C -0.066 4.066 12 C -0.256 4.256 13 C -0.041 4.041 14 C -0.249 4.249 15 C 0.561 3.439 16 O -0.525 6.525 17 N -0.750 5.750 18 C 0.136 3.864 19 C -0.044 4.044 20 C 0.217 3.783 21 N -0.482 5.482 22 C -0.026 4.026 23 C -0.062 4.062 24 N -0.567 5.567 25 H 0.418 0.582 26 H 0.287 0.713 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.390 0.610 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.170 0.830 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.468 -8.282 -10.474 17.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.166 1.166 6 H -0.216 1.216 7 C -0.428 4.428 8 H 0.142 0.858 9 C 0.112 3.888 10 C -0.245 4.245 11 C -0.084 4.084 12 C -0.275 4.275 13 C -0.060 4.060 14 C -0.254 4.254 15 C 0.354 3.646 16 O -0.402 6.402 17 N -0.406 5.406 18 C 0.011 3.989 19 C -0.084 4.084 20 C -0.048 4.048 21 N -0.201 5.201 22 C -0.174 4.174 23 C -0.195 4.195 24 N -0.171 5.171 25 H 0.256 0.744 26 H 0.097 0.903 27 H 0.122 0.878 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.225 0.775 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.187 0.813 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 9.873 -8.412 -9.813 16.265 hybrid contribution 1.412 1.087 -1.144 2.117 sum 11.284 -7.325 -10.957 17.351 Atomic orbital electron populations 1.69575 1.08222 1.30319 1.33444 1.26387 0.94867 1.01639 0.91297 0.86392 0.81311 0.79804 0.79192 1.19413 1.16568 1.21631 1.20226 0.90894 0.96666 1.35054 0.85774 1.17550 0.93135 0.89480 0.88646 1.21152 0.94701 1.05005 1.03620 1.20734 0.93741 0.96705 0.97263 1.20280 0.97841 1.03224 1.06164 1.20766 0.93525 0.96008 0.95705 1.19406 0.92755 1.06942 1.06259 1.18337 0.86260 0.79996 0.80021 1.90745 1.14214 1.68516 1.66725 1.45957 1.09846 1.40337 1.44438 1.20971 0.94364 0.91239 0.92374 1.20167 0.97962 0.94469 0.95792 1.23041 0.98579 0.99810 0.83362 1.70278 1.13670 1.07154 1.29018 1.22403 1.03288 1.03010 0.88725 1.22743 1.00059 0.95824 1.00914 1.43311 1.34399 1.29301 1.10068 0.74422 0.90269 0.87796 0.88610 0.88569 0.88686 0.77543 0.90553 0.92108 0.89956 0.88557 0.81289 0.80677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.79 13.92 55.56 0.77 -21.02 16 2 C 0.08 2.12 5.47 -17.30 -0.09 2.03 16 3 Si 0.91 20.84 24.51 -169.99 -4.17 16.67 16 4 H -0.27 -5.86 6.76 56.52 0.38 -5.48 16 5 H -0.24 -5.68 6.72 56.52 0.38 -5.30 16 6 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.40 -11.41 8.31 -37.82 -0.31 -11.72 16 8 H 0.12 3.92 5.96 -52.48 -0.31 3.61 16 9 C 0.12 3.02 5.03 -106.54 -0.54 2.49 16 10 C -0.23 -5.35 7.00 -38.88 -0.27 -5.63 16 11 C -0.07 -1.37 10.01 -39.60 -0.40 -1.76 16 12 C -0.26 -4.97 10.03 -39.37 -0.39 -5.36 16 13 C -0.04 -0.81 9.52 -39.22 -0.37 -1.18 16 14 C -0.25 -5.83 5.92 -104.37 -0.62 -6.44 16 15 C 0.56 12.83 7.72 -12.52 -0.10 12.74 16 16 O -0.53 -14.27 13.53 5.26 0.07 -14.20 16 17 N -0.75 -12.70 5.51 -61.38 -0.34 -13.04 16 18 C 0.14 2.08 5.63 -4.04 -0.02 2.06 16 19 C -0.04 -0.47 5.96 -27.89 -0.17 -0.64 16 20 C 0.22 2.58 7.43 -155.42 -1.15 1.42 16 21 N -0.48 -6.93 11.21 -10.82 -0.12 -7.05 16 22 C -0.03 -0.30 11.87 -17.81 -0.21 -0.51 16 23 C -0.06 -0.54 12.04 -16.56 -0.20 -0.74 16 24 N -0.57 -4.97 6.15 -10.23 -0.06 -5.03 16 25 H 0.42 2.22 8.96 -40.82 -0.37 1.85 16 26 H 0.29 7.07 8.29 -40.82 -0.34 6.73 16 27 H 0.10 2.43 5.00 -52.49 -0.26 2.17 16 28 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 29 H 0.10 1.58 8.06 -52.48 -0.42 1.16 16 30 H 0.10 1.47 6.42 -52.49 -0.34 1.13 16 31 H 0.39 5.30 6.52 -40.82 -0.27 5.04 16 32 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.17 1.54 8.06 -52.48 -0.42 1.12 16 37 H 0.18 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 313.34 15.07 4.72 4.72 Total: -1.00 -34.13 313.34 -8.08 -42.20 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -4.10 Total: 10.00 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -4.85 Total: -13.26 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.25 Total: -46.14 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.07 Total: -14.20 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.17 Total: 16.67 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.13 -8.08 -42.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136818259.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.805 kcal (2) G-P(sol) polarization free energy of solvation -34.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds