Wall clock time and date at job start Tue Mar 31 2020 06:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00077 * 2 1 4 4 H 1.48497 * 109.47361 * 269.99853 * 3 2 1 5 5 H 1.48500 * 109.47268 * 30.00446 * 3 2 1 6 6 H 1.48508 * 109.46982 * 149.99977 * 3 2 1 7 7 C 1.37882 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00006 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99747 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46910 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47222 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47255 * 180.02562 * 11 10 9 13 13 C 1.34771 * 120.00067 * 179.97438 * 12 11 10 14 14 O 1.21536 * 119.99880 * 359.97438 * 13 12 11 15 15 C 1.48052 * 120.00288 * 180.02562 * 13 12 11 16 16 C 1.38451 * 119.27199 * 179.97438 * 15 13 12 17 17 C 1.40352 * 118.33585 * 179.97438 * 16 15 13 18 18 C 1.40367 * 123.07140 * 180.02562 * 17 16 15 19 19 C 1.36409 * 118.51040 * 179.97438 * 18 17 16 20 20 N 1.32531 * 121.85821 * 0.02767 * 19 18 17 21 21 C 1.31332 * 122.88990 * 359.97106 * 20 19 18 22 22 C 1.40231 * 119.80222 * 0.02562 * 21 20 19 23 23 C 1.40494 * 122.67227 * 179.97438 * 22 21 20 24 24 N 1.30994 * 120.09548 * 179.97438 * 23 22 21 25 25 H 0.97001 * 119.99583 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.46935 * 60.00036 * 9 7 2 27 27 H 1.08999 * 109.47153 * 300.00227 * 9 7 2 28 28 H 1.09008 * 109.46983 * 60.00074 * 10 9 7 29 29 H 1.08999 * 109.47448 * 300.00108 * 10 9 7 30 30 H 1.08995 * 109.46865 * 59.99948 * 11 10 9 31 31 H 1.09007 * 109.46756 * 300.00048 * 11 10 9 32 32 H 0.97006 * 119.99834 * 0.02562 * 12 11 10 33 33 H 1.07997 * 120.83531 * 0.02562 * 16 15 13 34 34 H 1.07997 * 120.74705 * 0.02562 * 18 17 16 35 35 H 1.07998 * 119.07035 * 180.02562 * 19 18 17 36 36 H 1.08006 * 120.09553 * 180.02562 * 21 20 19 37 37 H 1.08000 * 119.95309 * 0.27017 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4801 -4.9872 -0.0025 12 7 2.4320 -6.1007 -0.0031 13 6 1.9828 -7.3713 -0.0032 14 8 0.7878 -7.5933 -0.0023 15 6 2.9447 -8.4967 -0.0032 16 6 2.4666 -9.7960 -0.0028 17 6 3.3959 -10.8479 -0.0034 18 6 3.0215 -12.2007 -0.0036 19 6 4.0031 -13.1479 -0.0047 20 7 5.2881 -12.8236 -0.0051 21 6 5.7098 -11.5798 -0.0050 22 6 4.7811 -10.5291 -0.0039 23 6 5.1650 -9.1776 -0.0032 24 7 4.2542 -8.2361 -0.0027 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5566 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 2.8725 -3.6048 0.8878 29 1 2.8711 -3.6040 -0.8922 30 1 0.8531 -5.0442 -0.8922 31 1 0.8538 -5.0455 0.8878 32 1 3.3858 -5.9235 -0.0027 33 1 1.4052 -9.9953 -0.0029 34 1 1.9797 -12.4853 -0.0037 35 1 3.7252 -14.1915 -0.0053 36 1 6.7686 -11.3669 -0.0058 37 1 6.2125 -8.9146 -0.0079 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153076857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:53 Heat of formation + Delta-G solvation = -10.867087 kcal Electronic energy + Delta-G solvation = -20305.538665 eV Core-core repulsion = 17046.138659 eV Total energy + Delta-G solvation = -3259.400006 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.32216 -40.80582 -38.95592 -37.06551 -35.26801 -34.45472 -33.43433 -32.65488 -31.37261 -28.82634 -26.50623 -25.67772 -24.72302 -23.73645 -22.35487 -22.13358 -19.68091 -18.65770 -18.62591 -18.34308 -17.31946 -16.90463 -16.88310 -16.42922 -16.10941 -15.90180 -15.37754 -15.25431 -15.22391 -14.79198 -14.29385 -13.98438 -13.86048 -13.76511 -13.49176 -13.07318 -12.75534 -12.57277 -12.39599 -11.74994 -11.71555 -11.69655 -11.38149 -11.23059 -11.06455 -10.69684 -10.55414 -10.37534 -10.19912 -9.45038 -8.19608 -6.30977 -1.04631 -0.53455 0.64057 1.35110 1.41898 1.43398 1.54420 1.97181 2.25178 2.42428 2.95547 2.98382 3.14093 3.34302 3.41931 3.50519 3.64120 3.68634 3.94866 4.10964 4.17571 4.31930 4.45423 4.49464 4.52331 4.59025 4.80638 4.91040 4.91374 5.01967 5.14798 5.31305 5.35900 5.51213 5.51545 5.69519 5.83591 6.21496 6.31831 6.67281 6.85011 6.86082 7.03523 7.38422 8.92511 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.044809 B = 0.002419 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.719777 B =11570.301215 C =12169.272451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.024 3.976 10 C -0.102 4.102 11 C 0.127 3.873 12 N -0.694 5.694 13 C 0.559 3.441 14 O -0.575 6.575 15 C 0.062 3.938 16 C -0.097 4.097 17 C -0.021 4.021 18 C -0.158 4.158 19 C 0.096 3.904 20 N -0.507 5.507 21 C 0.176 3.824 22 C -0.171 4.171 23 C 0.184 3.816 24 N -0.491 5.491 25 H 0.263 0.737 26 H -0.006 1.006 27 H -0.006 1.006 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.420 0.580 33 H 0.152 0.848 34 H 0.164 0.836 35 H 0.185 0.815 36 H 0.212 0.788 37 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.145 -27.064 -0.019 30.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.014 4.014 10 C -0.140 4.140 11 C 0.003 3.997 12 N -0.345 5.345 13 C 0.345 3.655 14 O -0.455 6.455 15 C -0.064 4.064 16 C -0.119 4.119 17 C -0.031 4.031 18 C -0.178 4.178 19 C -0.048 4.048 20 N -0.215 5.215 21 C 0.004 3.996 22 C -0.176 4.176 23 C 0.009 3.991 24 N -0.201 5.201 25 H 0.072 0.928 26 H 0.012 0.988 27 H 0.012 0.988 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.258 0.742 33 H 0.170 0.830 34 H 0.181 0.819 35 H 0.202 0.798 36 H 0.228 0.772 37 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 13.713 -26.908 -0.015 30.201 hybrid contribution -0.977 1.036 -0.008 1.424 sum 12.736 -25.873 -0.022 28.838 Atomic orbital electron populations 1.70115 1.07921 1.27799 1.51678 1.26038 0.95783 1.03588 0.94782 0.85397 0.78668 0.78205 0.78468 1.19792 1.21006 1.18443 1.21674 0.93751 0.91988 1.50473 0.91571 1.18941 0.94385 0.92828 0.95201 1.21602 0.98492 0.91699 1.02161 1.21376 0.91851 0.85235 1.01206 1.45873 1.11855 1.04674 1.72067 1.18331 0.87286 0.83412 0.76468 1.90765 1.17120 1.85234 1.52342 1.20716 0.90966 0.92465 1.02244 1.22178 1.01682 0.91230 0.96763 1.18475 0.93243 0.94911 0.96440 1.22178 1.03214 0.90912 1.01472 1.22854 0.87209 1.01616 0.93135 1.67581 1.19074 1.22335 1.12528 1.23865 1.01252 0.85526 0.88974 1.20379 0.94371 0.98161 1.04658 1.23921 1.00737 0.85790 0.88684 1.67378 1.00530 1.39136 1.13032 0.92803 0.98802 0.98788 0.91419 0.91408 0.92576 0.92592 0.74228 0.82993 0.81880 0.79799 0.77160 0.76191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.41 13.29 21.45 0.28 -57.13 16 2 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 3 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 7 C -0.54 -30.48 9.11 25.60 0.23 -30.25 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.10 -4.05 5.27 30.59 0.16 -3.89 16 11 C 0.13 4.68 5.67 86.38 0.49 5.17 16 12 N -0.69 -21.79 5.54 -465.76 -2.58 -24.37 16 13 C 0.56 18.19 7.80 86.85 0.68 18.87 16 14 O -0.57 -22.41 16.28 -3.83 -0.06 -22.47 16 15 C 0.06 1.58 6.74 41.54 0.28 1.86 16 16 C -0.10 -2.16 9.46 22.84 0.22 -1.94 16 17 C -0.02 -0.36 5.75 -21.28 -0.12 -0.48 16 18 C -0.16 -2.02 9.92 22.36 0.22 -1.80 16 19 C 0.10 1.09 11.08 84.16 0.93 2.02 16 20 N -0.51 -6.68 10.29 -195.51 -2.01 -8.70 16 21 C 0.18 1.70 11.08 85.25 0.94 2.64 16 22 C -0.17 -2.34 5.75 -21.28 -0.12 -2.47 16 23 C 0.18 2.38 11.06 85.37 0.94 3.33 16 24 N -0.49 -10.30 9.44 -183.96 -1.74 -12.04 16 25 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 26 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 27 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 28 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 29 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 32 H 0.42 11.34 7.77 -92.70 -0.72 10.62 16 33 H 0.15 3.36 7.61 -2.91 -0.02 3.33 16 34 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 35 H 0.19 1.00 8.06 -2.91 -0.02 0.97 16 36 H 0.21 0.21 8.06 -2.91 -0.02 0.19 16 37 H 0.22 0.67 8.06 -2.91 -0.02 0.64 16 Total: -1.00 -75.83 327.33 1.76 -74.07 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.37 Total: 9.84 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 5.47 Total: -5.30 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -6.05 Total: -102.23 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.06 Total: -22.47 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -75.83 1.76 -74.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153076857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.207 kcal (2) G-P(sol) polarization free energy of solvation -75.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds