Wall clock time and date at job start Tue Mar 31 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48501 * 109.47046 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00256 * 3 2 1 6 6 H 1.48508 * 109.46873 * 60.00291 * 3 2 1 7 7 C 1.37884 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47289 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00072 * 180.02562 * 12 11 10 14 14 O 1.21559 * 120.00081 * 359.97438 * 13 12 11 15 15 C 1.47756 * 119.99706 * 180.02562 * 13 12 11 16 16 C 1.40547 * 120.32675 * 359.72079 * 15 13 12 17 17 N 1.30820 * 121.61418 * 179.73647 * 16 15 13 18 18 C 1.33851 * 121.81262 * 0.55351 * 17 16 15 19 19 N 1.33674 * 120.60911 * 179.74295 * 18 17 16 20 20 C 1.31155 * 121.48615 * 179.97438 * 19 18 17 21 21 C 1.39252 * 121.84763 * 0.02562 * 20 19 18 22 22 C 1.36648 * 119.79322 * 359.97438 * 21 20 19 23 23 C 1.40762 * 118.11699 * 0.02562 * 22 21 20 24 24 C 1.39093 * 120.32077 * 179.97438 * 15 13 12 25 25 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 27 27 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 28 28 H 1.09001 * 109.46997 * 60.00245 * 10 9 7 29 29 H 1.08996 * 109.47452 * 299.99818 * 10 9 7 30 30 H 1.09001 * 109.47289 * 60.00050 * 11 10 9 31 31 H 1.09004 * 109.47261 * 300.00306 * 11 10 9 32 32 H 0.97001 * 119.99251 * 0.02562 * 12 11 10 33 33 H 1.08005 * 119.19230 * 0.02562 * 16 15 13 34 34 H 1.08002 * 119.06919 * 180.02562 * 20 19 18 35 35 H 1.08006 * 120.09827 * 179.97438 * 21 20 19 36 36 H 1.08003 * 120.93888 * 179.97438 * 22 21 20 37 37 H 1.07997 * 121.03963 * 359.95820 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4319 -6.1008 0.0018 13 6 1.9825 -7.3714 0.0019 14 8 0.7874 -7.5934 0.0020 15 6 2.9427 -8.4945 0.0031 16 6 4.3259 -8.2456 -0.0018 17 7 5.1981 -9.2206 0.0043 18 6 4.8208 -10.5048 0.0044 19 7 5.7328 -11.4821 0.0055 20 6 5.3825 -12.7460 0.0062 21 6 4.0463 -13.1381 0.0053 22 6 3.0609 -12.1914 0.0041 23 6 3.4426 -10.8365 0.0034 24 6 2.4863 -9.8084 0.0038 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8903 28 1 2.8717 -3.6045 0.8906 29 1 2.8717 -3.6045 -0.8894 30 1 0.8530 -5.0451 -0.8886 31 1 0.8535 -5.0445 0.8914 32 1 3.3856 -5.9235 0.0021 33 1 4.6774 -7.2243 -0.0060 34 1 6.1519 -13.5039 0.0075 35 1 3.7896 -14.1872 0.0054 36 1 2.0187 -12.4747 0.0030 37 1 1.4295 -10.0309 0.0041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153772636.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:10 Heat of formation + Delta-G solvation = 20.590574 kcal Electronic energy + Delta-G solvation = -20319.134596 eV Core-core repulsion = 17061.098696 eV Total energy + Delta-G solvation = -3258.035900 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.61411 -39.74594 -37.86456 -35.61036 -34.41127 -33.44884 -31.89320 -31.46993 -30.78815 -27.10715 -25.39832 -24.94538 -23.16665 -22.82702 -21.28072 -20.57951 -19.09649 -18.12067 -17.93075 -16.49836 -16.22053 -15.66605 -15.64439 -15.15781 -15.06637 -14.95223 -14.46909 -13.97393 -13.95915 -13.79394 -13.39031 -12.61404 -12.61193 -12.32406 -11.88495 -11.81764 -11.45781 -10.98952 -10.94225 -10.78881 -10.59645 -10.19436 -9.92037 -9.52073 -9.43689 -9.37414 -9.31218 -9.13811 -8.90601 -8.39798 -6.04279 -4.07306 -0.33542 0.04608 1.39887 2.08369 3.04851 3.08745 3.28456 3.28973 3.36756 3.40350 3.72803 3.96893 4.13464 4.25670 4.28490 4.33975 4.42788 4.58860 4.70499 4.89159 5.17340 5.27955 5.31846 5.44480 5.55715 5.69065 5.70309 5.74866 6.07968 6.10277 6.31536 6.53406 6.73676 6.94300 6.95336 7.49170 7.60607 7.71624 7.72107 7.94246 8.13401 8.35313 8.99570 9.57206 11.07002 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.044371 B = 0.002425 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.892717 B =11543.489707 C =12148.632199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.122 4.122 11 C 0.116 3.884 12 N -0.716 5.716 13 C 0.558 3.442 14 O -0.536 6.536 15 C -0.192 4.192 16 C 0.190 3.810 17 N -0.466 5.466 18 C 0.319 3.681 19 N -0.468 5.468 20 C 0.166 3.834 21 C -0.185 4.185 22 C -0.031 4.031 23 C -0.166 4.166 24 C 0.025 3.975 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.399 0.601 33 H 0.172 0.828 34 H 0.169 0.831 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.686 -26.887 -0.004 27.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.160 4.160 11 C -0.006 4.006 12 N -0.367 5.367 13 C 0.344 3.656 14 O -0.414 6.414 15 C -0.198 4.198 16 C 0.012 3.988 17 N -0.174 5.174 18 C 0.081 3.919 19 N -0.177 5.177 20 C -0.010 4.010 21 C -0.205 4.205 22 C -0.058 4.058 23 C -0.171 4.171 24 C -0.003 4.003 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.234 0.766 33 H 0.188 0.812 34 H 0.186 0.814 35 H 0.164 0.836 36 H 0.165 0.835 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 8.484 -26.454 0.000 27.781 hybrid contribution -0.877 0.652 -0.001 1.092 sum 7.607 -25.802 -0.001 26.900 Atomic orbital electron populations 1.69975 1.06068 1.26609 1.50613 1.25037 0.94867 0.99358 0.95260 0.86523 0.80071 0.83712 0.77605 1.19726 1.20999 1.21002 1.21236 0.93057 0.90884 1.50859 0.92534 1.19036 0.93838 0.90840 0.97707 1.21915 0.99856 0.93172 1.01098 1.21746 0.91752 0.84768 1.02372 1.46153 1.11095 1.05661 1.73782 1.17883 0.87741 0.82730 0.77278 1.90794 1.15865 1.84690 1.50083 1.21172 0.95415 0.95106 1.08073 1.23231 0.87725 0.98743 0.89056 1.67521 1.37891 0.98371 1.13603 1.19475 0.86571 0.91270 0.94549 1.67653 1.36852 1.00095 1.13133 1.23185 0.95470 0.92281 0.90023 1.22015 0.93989 1.01444 1.03047 1.21589 1.00992 0.90802 0.92407 1.19614 0.95560 0.95532 1.06408 1.21976 1.00502 0.90293 0.87505 0.92967 0.96232 0.96221 0.92537 0.92530 0.91350 0.91357 0.76639 0.81162 0.81402 0.83631 0.83544 0.82444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.12 -2.28 5.27 -26.73 -0.14 -2.42 16 11 C 0.12 1.91 5.67 -4.04 -0.02 1.89 16 12 N -0.72 -9.53 5.51 -61.28 -0.34 -9.86 16 13 C 0.56 7.80 7.77 -12.37 -0.10 7.71 16 14 O -0.54 -9.32 16.39 5.31 0.09 -9.23 16 15 C -0.19 -2.20 5.89 -104.82 -0.62 -2.82 16 16 C 0.19 2.04 10.68 -17.11 -0.18 1.86 16 17 N -0.47 -6.01 10.40 -12.31 -0.13 -6.14 16 18 C 0.32 3.92 7.62 -157.70 -1.20 2.72 16 19 N -0.47 -5.37 10.42 -12.57 -0.13 -5.50 16 20 C 0.17 1.16 11.14 -17.46 -0.19 0.97 16 21 C -0.19 -0.97 10.03 -39.78 -0.40 -1.37 16 22 C -0.03 -0.21 9.90 -39.20 -0.39 -0.59 16 23 C -0.17 -1.65 5.74 -106.78 -0.61 -2.27 16 24 C 0.02 0.25 9.47 -38.45 -0.36 -0.11 16 25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.40 4.13 6.50 -40.82 -0.27 3.86 16 33 H 0.17 1.34 6.38 -52.48 -0.33 1.01 16 34 H 0.17 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.15 0.27 8.06 -52.48 -0.42 -0.16 16 36 H 0.15 0.55 8.06 -52.48 -0.42 0.12 16 37 H 0.16 1.41 7.71 -52.49 -0.40 1.01 16 LS Contribution 325.25 15.07 4.90 4.90 Total: -1.00 -35.16 325.25 -9.01 -44.17 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.35 Total: -1.67 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -4.77 Total: -7.17 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.14 Total: -47.30 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.16 -9.01 -44.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153772636.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.765 kcal (2) G-P(sol) polarization free energy of solvation -35.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds