Wall clock time and date at job start Tue Mar 31 2020 05:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48501 * 109.47046 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00256 * 3 2 1 6 6 H 1.48508 * 109.46873 * 60.00291 * 3 2 1 7 7 C 1.37884 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47289 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00072 * 180.02562 * 12 11 10 14 14 O 1.21559 * 120.00081 * 359.97438 * 13 12 11 15 15 C 1.47756 * 119.99706 * 180.02562 * 13 12 11 16 16 C 1.40547 * 120.32675 * 359.72079 * 15 13 12 17 17 N 1.30820 * 121.61418 * 179.73647 * 16 15 13 18 18 C 1.33851 * 121.81262 * 0.55351 * 17 16 15 19 19 N 1.33674 * 120.60911 * 179.74295 * 18 17 16 20 20 C 1.31155 * 121.48615 * 179.97438 * 19 18 17 21 21 C 1.39252 * 121.84763 * 0.02562 * 20 19 18 22 22 C 1.36648 * 119.79322 * 359.97438 * 21 20 19 23 23 C 1.40762 * 118.11699 * 0.02562 * 22 21 20 24 24 C 1.39093 * 120.32077 * 179.97438 * 15 13 12 25 25 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 27 27 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 28 28 H 1.09001 * 109.46997 * 60.00245 * 10 9 7 29 29 H 1.08996 * 109.47452 * 299.99818 * 10 9 7 30 30 H 1.09001 * 109.47289 * 60.00050 * 11 10 9 31 31 H 1.09004 * 109.47261 * 300.00306 * 11 10 9 32 32 H 0.97001 * 119.99251 * 0.02562 * 12 11 10 33 33 H 1.08005 * 119.19230 * 0.02562 * 16 15 13 34 34 H 1.08002 * 119.06919 * 180.02562 * 20 19 18 35 35 H 1.08006 * 120.09827 * 179.97438 * 21 20 19 36 36 H 1.08003 * 120.93888 * 179.97438 * 22 21 20 37 37 H 1.07997 * 121.03963 * 359.95820 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4319 -6.1008 0.0018 13 6 1.9825 -7.3714 0.0019 14 8 0.7874 -7.5934 0.0020 15 6 2.9427 -8.4945 0.0031 16 6 4.3259 -8.2456 -0.0018 17 7 5.1981 -9.2206 0.0043 18 6 4.8208 -10.5048 0.0044 19 7 5.7328 -11.4821 0.0055 20 6 5.3825 -12.7460 0.0062 21 6 4.0463 -13.1381 0.0053 22 6 3.0609 -12.1914 0.0041 23 6 3.4426 -10.8365 0.0034 24 6 2.4863 -9.8084 0.0038 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8903 28 1 2.8717 -3.6045 0.8906 29 1 2.8717 -3.6045 -0.8894 30 1 0.8530 -5.0451 -0.8886 31 1 0.8535 -5.0445 0.8914 32 1 3.3856 -5.9235 0.0021 33 1 4.6774 -7.2243 -0.0060 34 1 6.1519 -13.5039 0.0075 35 1 3.7896 -14.1872 0.0054 36 1 2.0187 -12.4747 0.0030 37 1 1.4295 -10.0309 0.0041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153772636.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:09 Heat of formation + Delta-G solvation = -3.542091 kcal Electronic energy + Delta-G solvation = -20320.181067 eV Core-core repulsion = 17061.098696 eV Total energy + Delta-G solvation = -3259.082371 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.34390 -40.79466 -38.63936 -37.04559 -35.28111 -35.09516 -33.32148 -32.21071 -31.87032 -28.72925 -26.41856 -25.70365 -24.70544 -23.57947 -22.40903 -22.12573 -19.91548 -19.08262 -18.72322 -18.40140 -16.96688 -16.83904 -16.81583 -16.41604 -16.11026 -15.77221 -15.64821 -15.33516 -15.08104 -14.45456 -14.27967 -14.03418 -13.74943 -13.60806 -13.26699 -13.18173 -12.77805 -12.54495 -12.35186 -12.18093 -11.85256 -11.66911 -11.54071 -11.23798 -11.04980 -10.55106 -10.31968 -10.13879 -10.03162 -9.95146 -8.19070 -6.29820 -1.02752 -0.63730 0.71039 1.33384 1.42105 1.42622 1.55516 1.98906 2.12415 2.42787 2.63194 2.99635 3.15060 3.26415 3.47589 3.54178 3.56997 3.78338 3.88937 4.11015 4.20829 4.23194 4.38052 4.50262 4.56459 4.75368 4.77690 4.95842 4.96112 5.06843 5.11752 5.18911 5.35299 5.53758 5.54615 5.72743 5.85843 6.23255 6.25283 6.41958 6.88109 7.02392 7.06547 7.39693 8.93123 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.044371 B = 0.002425 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.892717 B =11543.489707 C =12148.632199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.966 3.034 4 H -0.259 1.259 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.023 3.977 10 C -0.105 4.105 11 C 0.130 3.870 12 N -0.706 5.706 13 C 0.564 3.436 14 O -0.575 6.575 15 C -0.208 4.208 16 C 0.191 3.809 17 N -0.499 5.499 18 C 0.295 3.705 19 N -0.515 5.515 20 C 0.170 3.830 21 C -0.169 4.169 22 C -0.033 4.033 23 C -0.178 4.178 24 C 0.033 3.967 25 H 0.263 0.737 26 H -0.006 1.006 27 H -0.006 1.006 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.415 0.585 33 H 0.192 0.808 34 H 0.204 0.796 35 H 0.190 0.810 36 H 0.179 0.821 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.160 -28.979 -0.005 30.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.790 3.210 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.084 0.916 9 C -0.015 4.015 10 C -0.142 4.142 11 C 0.006 3.994 12 N -0.358 5.358 13 C 0.351 3.649 14 O -0.456 6.456 15 C -0.213 4.213 16 C 0.014 3.986 17 N -0.207 5.207 18 C 0.057 3.943 19 N -0.226 5.226 20 C -0.004 4.004 21 C -0.189 4.189 22 C -0.060 4.060 23 C -0.183 4.183 24 C 0.006 3.994 25 H 0.071 0.929 26 H 0.012 0.988 27 H 0.012 0.988 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.253 0.747 33 H 0.209 0.791 34 H 0.220 0.780 35 H 0.208 0.792 36 H 0.196 0.804 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 10.002 -28.567 -0.001 30.267 hybrid contribution -1.317 1.076 -0.001 1.701 sum 8.685 -27.491 -0.002 28.831 Atomic orbital electron populations 1.70114 1.07872 1.27671 1.51851 1.26010 0.95753 1.03503 0.94910 0.85387 0.79220 0.78781 0.77572 1.18261 1.20640 1.20651 1.21721 0.93767 0.92035 1.50148 0.91552 1.18951 0.94465 0.92872 0.95210 1.21626 0.98528 0.91729 1.02361 1.21328 0.91776 0.84973 1.01306 1.45889 1.11466 1.04834 1.73590 1.18167 0.87570 0.83114 0.76005 1.90769 1.17603 1.85234 1.51995 1.20910 0.95107 0.94584 1.10711 1.23464 0.87236 0.99413 0.88451 1.67506 1.38804 0.99339 1.15099 1.19782 0.87852 0.91378 0.95258 1.67679 1.37669 1.01605 1.15611 1.23960 0.97591 0.91522 0.87311 1.22495 0.92683 1.03350 1.00335 1.22036 1.03115 0.89353 0.91457 1.19766 0.94473 0.97122 1.06960 1.22186 1.01181 0.90083 0.85995 0.92854 0.98806 0.98798 0.91195 0.91181 0.92553 0.92565 0.74734 0.79129 0.77967 0.79231 0.80405 0.81373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.73 13.29 21.45 0.28 -56.44 16 2 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 3 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 7 C -0.54 -29.72 9.11 25.60 0.23 -29.49 16 8 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.02 1.16 4.97 29.85 0.15 1.31 16 10 C -0.10 -3.87 5.27 30.59 0.16 -3.71 16 11 C 0.13 4.34 5.67 86.38 0.49 4.83 16 12 N -0.71 -18.53 5.51 -466.05 -2.57 -21.10 16 13 C 0.56 15.81 7.77 86.76 0.67 16.49 16 14 O -0.58 -20.32 16.39 -3.90 -0.06 -20.39 16 15 C -0.21 -4.73 5.89 -19.99 -0.12 -4.85 16 16 C 0.19 4.09 10.68 85.41 0.91 5.01 16 17 N -0.50 -12.97 10.40 -192.85 -2.00 -14.98 16 18 C 0.29 7.12 7.62 135.01 1.03 8.15 16 19 N -0.52 -11.32 10.42 -193.69 -2.02 -13.33 16 20 C 0.17 1.90 11.14 85.04 0.95 2.85 16 21 C -0.17 -1.09 10.03 22.14 0.22 -0.87 16 22 C -0.03 -0.34 9.90 22.52 0.22 -0.12 16 23 C -0.18 -3.33 5.74 -21.26 -0.12 -3.45 16 24 C 0.03 0.65 9.47 23.00 0.22 0.87 16 25 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 26 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 27 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 28 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.41 8.13 6.50 -92.71 -0.60 7.53 16 33 H 0.19 2.89 6.38 -2.91 -0.02 2.87 16 34 H 0.20 0.60 8.06 -2.91 -0.02 0.58 16 35 H 0.19 -0.44 8.06 -2.91 -0.02 -0.46 16 36 H 0.18 0.61 8.06 -2.91 -0.02 0.58 16 37 H 0.17 2.86 7.71 -2.91 -0.02 2.84 16 Total: -1.00 -79.14 325.25 1.63 -77.50 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 0.50 Total: 5.77 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 5.48 Total: -2.76 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -6.31 Total: -105.86 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.06 Total: -20.39 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -79.14 1.63 -77.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153772636.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.962 kcal (2) G-P(sol) polarization free energy of solvation -79.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds