Wall clock time and date at job start Tue Mar 31 2020 05:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00397 * 2 1 4 4 H 1.48500 * 109.46947 * 90.00132 * 3 2 1 5 5 H 1.48498 * 109.47345 * 209.99994 * 3 2 1 6 6 H 1.48496 * 109.47070 * 330.00642 * 3 2 1 7 7 C 1.38813 * 119.99583 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00114 * 23.65618 * 7 2 1 9 9 N 1.36932 * 119.99842 * 203.65448 * 7 2 1 10 10 C 1.47425 * 125.64896 * 14.56765 * 9 7 2 11 11 C 1.55137 * 104.72129 * 155.81436 * 10 9 7 12 12 C 1.55154 * 101.48430 * 37.29764 * 11 10 9 13 13 H 1.09001 * 110.87624 * 82.76563 * 12 11 10 14 14 O 1.42899 * 110.72201 * 205.96992 * 12 11 10 15 15 C 1.35575 * 117.00266 * 204.97812 * 14 12 11 16 16 C 1.40104 * 119.26772 * 179.97438 * 15 14 12 17 17 C 1.36229 * 119.96206 * 179.97438 * 16 15 14 18 18 C 1.41100 * 118.33474 * 0.02562 * 17 16 15 19 19 N 1.33498 * 121.06476 * 180.02562 * 18 17 16 20 20 C 1.31115 * 121.32097 * 180.02562 * 19 18 17 21 21 C 1.39339 * 121.59813 * 359.95148 * 20 19 18 22 22 C 1.36544 * 119.98215 * 0.02562 * 21 20 19 23 23 C 1.40861 * 118.24732 * 359.97438 * 22 21 20 24 24 N 1.31527 * 119.26632 * 359.72930 * 15 14 12 25 25 C 1.47026 * 125.64842 * 194.87509 * 9 7 2 26 26 H 0.96991 * 120.00329 * 174.68590 * 1 2 3 27 27 H 1.08999 * 110.36784 * 274.74130 * 10 9 7 28 28 H 1.08997 * 110.36450 * 37.07099 * 10 9 7 29 29 H 1.08994 * 111.19051 * 279.19123 * 11 10 9 30 30 H 1.08995 * 110.93567 * 155.28600 * 11 10 9 31 31 H 1.08005 * 120.02017 * 0.02562 * 16 15 14 32 32 H 1.08000 * 120.83468 * 179.97438 * 17 16 15 33 33 H 1.07995 * 119.20318 * 179.97438 * 20 19 18 34 34 H 1.08000 * 120.00927 * 180.02562 * 21 20 19 35 35 H 1.08003 * 120.87726 * 180.02562 * 22 21 20 36 36 H 1.09007 * 109.88116 * 300.44379 * 25 9 7 37 37 H 1.08996 * 109.88387 * 61.60335 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 1.4001 5 1 3.5479 1.4400 -0.7000 6 1 1.4478 2.6526 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 1.5382 -2.0980 -0.3762 9 7 3.2932 -1.2523 0.4752 10 6 3.9515 -0.2093 1.2829 11 6 5.0663 -0.9574 2.0601 12 6 5.5476 -1.9826 0.9996 13 1 6.2633 -1.5266 0.3154 14 8 6.1153 -3.1329 1.6294 15 6 7.0173 -3.8458 0.9109 16 6 7.6040 -4.9823 1.4827 17 6 8.5117 -5.7094 0.7733 18 6 8.8351 -5.2857 -0.5332 19 7 9.7169 -5.9577 -1.2768 20 6 10.0215 -5.5682 -2.4912 21 6 9.4404 -4.4380 -3.0627 22 6 8.5303 -3.7067 -2.3547 23 6 8.2057 -4.1284 -1.0505 24 7 7.3186 -3.4578 -0.3092 25 6 4.2446 -2.3523 0.2599 26 1 -0.4850 -0.8363 -0.0778 27 1 4.3837 0.5546 0.6365 28 1 3.2403 0.2380 1.9772 29 1 4.6634 -1.4631 2.9376 30 1 5.8707 -0.2768 2.3388 31 1 7.3361 -5.2824 2.4851 32 1 8.9728 -6.5876 1.2004 33 1 10.7398 -6.1373 -3.0624 34 1 9.7098 -4.1406 -4.0654 35 1 8.0707 -2.8285 -2.7837 36 1 3.8381 -3.2788 0.6657 37 1 4.4431 -2.4676 -0.8056 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230718921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:28 Heat of formation + Delta-G solvation = 64.456715 kcal Electronic energy + Delta-G solvation = -21639.164190 eV Core-core repulsion = 18383.030469 eV Total energy + Delta-G solvation = -3256.133721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.41526 -39.58458 -37.63335 -36.15893 -34.12091 -32.49908 -31.35625 -30.43391 -29.46356 -28.06512 -25.11909 -24.24513 -23.67530 -22.64353 -21.04813 -20.26104 -19.35434 -18.18027 -17.71334 -17.33590 -16.35665 -15.80935 -15.40344 -15.07390 -14.72159 -14.11407 -14.02492 -13.98328 -13.49734 -13.41436 -13.19684 -12.98478 -12.44663 -12.28420 -12.10429 -11.67714 -11.33213 -11.11357 -11.09650 -10.89699 -10.56282 -10.29116 -10.02416 -9.60864 -9.24812 -9.24434 -9.17454 -8.54413 -8.43369 -7.09988 -6.32560 -3.23327 0.09386 0.49762 1.75006 2.69367 2.94768 3.40071 3.51406 3.66284 3.88328 3.91375 4.07755 4.27360 4.58173 4.58798 4.64564 4.81481 4.96078 4.99024 5.04023 5.26882 5.28092 5.42696 5.46630 5.53283 5.54558 5.62251 5.81739 5.86233 5.96124 6.05329 6.16048 6.25690 6.48107 6.52382 6.56762 6.71120 7.28968 7.57905 7.65772 7.70786 8.33148 9.02552 9.56138 10.23307 11.14909 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.026796 B = 0.003927 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.674113 B = 7128.823675 C = 7579.702934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.019 4.019 3 Si 1.065 2.935 4 H -0.292 1.292 5 H -0.286 1.286 6 H -0.297 1.297 7 C -0.327 4.327 8 H 0.075 0.925 9 N -0.605 5.605 10 C 0.107 3.893 11 C -0.125 4.125 12 C 0.076 3.924 13 H 0.097 0.903 14 O -0.290 6.290 15 C 0.363 3.637 16 C -0.160 4.160 17 C -0.017 4.017 18 C 0.041 3.959 19 N -0.456 5.456 20 C 0.111 3.889 21 C -0.151 4.151 22 C -0.057 4.057 23 C 0.126 3.874 24 N -0.530 5.530 25 C 0.124 3.876 26 H 0.263 0.737 27 H 0.035 0.965 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.161 0.839 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.035 0.965 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.755 -9.374 -0.863 23.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.220 4.220 3 Si 0.896 3.104 4 H -0.220 1.220 5 H -0.213 1.213 6 H -0.225 1.225 7 C -0.454 4.454 8 H 0.093 0.907 9 N -0.334 5.334 10 C -0.018 4.018 11 C -0.163 4.163 12 C 0.020 3.980 13 H 0.115 0.885 14 O -0.194 6.194 15 C 0.170 3.830 16 C -0.182 4.182 17 C -0.042 4.042 18 C -0.083 4.083 19 N -0.164 5.164 20 C -0.063 4.063 21 C -0.173 4.173 22 C -0.084 4.084 23 C 0.003 3.997 24 N -0.257 5.257 25 C -0.002 4.002 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.171 0.829 32 H 0.172 0.828 33 H 0.179 0.821 34 H 0.160 0.840 35 H 0.165 0.835 36 H 0.053 0.947 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 21.306 -7.785 -0.509 22.689 hybrid contribution 0.133 -1.555 -0.427 1.618 sum 21.439 -9.340 -0.936 23.404 Atomic orbital electron populations 1.70903 1.05742 1.29993 1.49518 1.25927 0.96441 1.00865 0.98752 0.83841 0.74279 0.75879 0.76365 1.21972 1.21318 1.22520 1.20051 0.86486 0.96547 1.42308 0.90749 1.44698 1.10925 1.17745 1.60003 1.22094 0.93467 0.92614 0.93653 1.22955 0.98778 0.96508 0.98068 1.23613 0.95254 0.83397 0.95743 0.88544 1.86304 1.51968 1.40126 1.40970 1.20165 0.86887 0.88711 0.87279 1.21039 0.99353 0.94926 1.02908 1.21104 0.93788 0.98289 0.91042 1.19522 0.97876 0.94873 0.96035 1.67859 1.12447 1.29735 1.06406 1.22928 0.97756 0.94322 0.91250 1.21952 0.97423 0.96331 1.01565 1.21302 0.95777 0.99757 0.91552 1.19238 0.93237 0.92419 0.94798 1.67659 1.18532 1.33373 1.06169 1.21636 0.88201 0.93088 0.97274 0.92685 0.94715 0.91454 0.89958 0.90733 0.82942 0.82810 0.82139 0.83959 0.83531 0.94725 0.94682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.05 13.70 55.49 0.76 -28.29 16 2 C -0.02 -0.58 5.42 -17.43 -0.09 -0.67 16 3 Si 1.06 26.67 24.69 -169.99 -4.20 22.48 16 4 H -0.29 -6.83 6.66 56.52 0.38 -6.46 16 5 H -0.29 -6.81 6.22 56.52 0.35 -6.46 16 6 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 7 C -0.33 -9.58 10.44 -15.06 -0.16 -9.74 16 8 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 9 N -0.61 -15.36 3.25 -169.93 -0.55 -15.91 16 10 C 0.11 2.34 4.71 -2.41 -0.01 2.33 16 11 C -0.12 -2.17 6.82 -24.46 -0.17 -2.34 16 12 C 0.08 1.37 3.13 -24.90 -0.08 1.29 16 13 H 0.10 1.71 7.11 -51.93 -0.37 1.34 16 14 O -0.29 -4.75 9.83 -18.42 -0.18 -4.93 16 15 C 0.36 5.42 7.49 -16.98 -0.13 5.29 16 16 C -0.16 -1.85 9.95 -39.60 -0.39 -2.24 16 17 C -0.02 -0.18 10.10 -39.22 -0.40 -0.58 16 18 C 0.04 0.53 6.61 -84.80 -0.56 -0.03 16 19 N -0.46 -5.36 10.34 -10.92 -0.11 -5.47 16 20 C 0.11 0.99 11.16 -17.45 -0.19 0.80 16 21 C -0.15 -1.29 10.02 -39.78 -0.40 -1.69 16 22 C -0.06 -0.65 10.11 -39.20 -0.40 -1.04 16 23 C 0.13 1.75 6.61 -84.83 -0.56 1.19 16 24 N -0.53 -8.29 8.64 -11.00 -0.10 -8.38 16 25 C 0.12 2.71 7.01 -3.06 -0.02 2.69 16 26 H 0.26 8.22 8.73 -40.82 -0.36 7.86 16 27 H 0.04 0.76 5.50 -51.93 -0.29 0.48 16 28 H 0.07 1.54 6.38 -51.93 -0.33 1.21 16 29 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.15 1.23 8.06 -52.49 -0.42 0.80 16 33 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 35 H 0.15 1.53 8.06 -52.48 -0.42 1.10 16 36 H 0.03 0.78 8.06 -51.93 -0.42 0.36 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 308.57 15.07 4.65 4.65 Total: -1.00 -34.20 308.57 -7.72 -41.92 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -4.44 Total: -1.30 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -3.56 Total: -4.75 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.00 Total: -58.06 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.18 Total: -4.93 kcal Atomic # 14 Polarization: 26.67 SS G_CDS: -4.20 Total: 22.48 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.20 -7.72 -41.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230718921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.382 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds