Wall clock time and date at job start Tue Mar 31 2020 05:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38317 * 119.88007 * 2 1 4 4 C 1.38033 * 120.12098 * 179.97438 * 3 2 1 5 5 C 1.39306 * 119.87671 * 0.02562 * 4 3 2 6 6 C 1.48448 * 120.11710 * 179.97438 * 5 4 3 7 7 C 1.40657 * 126.20494 * 179.97438 * 6 5 4 8 8 C 1.38289 * 105.29146 * 179.97438 * 7 6 5 9 9 C 1.47056 * 126.78463 * 180.02562 * 8 7 6 10 10 O 1.21674 * 119.99725 * 350.84415 * 9 8 7 11 11 N 1.34776 * 120.00271 * 170.56837 * 9 8 7 12 12 C 1.46502 * 119.99610 * 359.01981 * 11 9 8 13 13 C 1.36838 * 120.00254 * 179.02484 * 11 9 8 14 14 H 1.08005 * 119.99778 * 318.59638 * 13 11 9 15 15 C 1.39044 * 120.00246 * 138.59290 * 13 11 9 16 16 N 1.31359 * 120.00297 * 164.39722 * 15 13 11 17 17 Si 1.86807 * 119.99950 * 344.40031 * 15 13 11 18 18 H 1.48491 * 109.47056 * 89.45062 * 17 15 13 19 19 H 1.48500 * 109.47202 * 209.45448 * 17 15 13 20 20 H 1.48498 * 109.47051 * 329.45245 * 17 15 13 21 21 N 1.36706 * 106.43218 * 0.26453 * 8 7 6 22 22 H 0.97000 * 125.07201 * 179.73933 * 21 8 7 23 23 N 1.28418 * 109.86714 * 359.54991 * 21 8 7 24 24 C 1.39315 * 119.76696 * 0.26391 * 5 4 3 25 25 C 1.38030 * 119.87524 * 359.45962 * 24 5 4 26 26 H 1.09000 * 109.46929 * 90.00344 * 1 2 3 27 27 H 1.08997 * 109.47388 * 209.99758 * 1 2 3 28 28 H 1.09001 * 109.47567 * 330.00765 * 1 2 3 29 29 H 1.08007 * 119.94261 * 359.95297 * 3 2 1 30 30 H 1.07993 * 120.06159 * 180.02562 * 4 3 2 31 31 H 1.08007 * 127.35080 * 359.96825 * 7 6 5 32 32 H 1.09005 * 109.46510 * 84.50002 * 12 11 9 33 33 H 1.08997 * 109.47008 * 204.49210 * 12 11 9 34 34 H 1.09000 * 109.47368 * 324.49732 * 12 11 9 35 35 H 0.97005 * 120.00499 * 179.97438 * 16 15 13 36 36 H 1.07998 * 120.06451 * 179.69916 * 24 5 4 37 37 H 1.08003 * 119.93686 * 180.24988 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1960 1.1993 0.0000 4 6 3.5763 1.2051 0.0005 5 6 4.2753 0.0001 0.0005 6 6 5.7598 0.0001 0.0005 7 6 6.5907 -1.1348 0.0010 8 6 7.8824 -0.6412 0.0002 9 6 9.1254 -1.4270 -0.0002 10 8 9.0838 -2.6314 0.1679 11 7 10.3102 -0.8140 -0.1923 12 6 10.3579 0.6321 -0.4220 13 6 11.4685 -1.5423 -0.1728 14 1 11.6059 -2.3187 0.5654 15 6 12.4687 -1.2829 -1.1033 16 7 13.6819 -1.7480 -0.9104 17 14 12.0869 -0.2729 -2.6277 18 1 12.3118 1.1659 -2.3373 19 1 12.9755 -0.6985 -3.7388 20 1 10.6699 -0.4833 -3.0188 21 7 7.7756 0.7217 0.0053 22 1 8.5235 1.3394 0.0097 23 7 6.5375 1.0624 -0.0004 24 6 3.5763 -1.2050 -0.0056 25 6 2.1961 -1.1992 -0.0003 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 1.6531 2.1330 -0.0008 30 1 4.1134 2.1420 0.0010 31 1 6.2849 -2.1707 0.0020 32 1 10.3535 1.1524 0.5358 33 1 11.2673 0.8835 -0.9678 34 1 9.4885 0.9363 -1.0048 35 1 14.3796 -1.5673 -1.5597 36 1 4.1134 -2.1419 -0.0105 37 1 1.6532 -2.1329 -0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101515481.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:34 Heat of formation + Delta-G solvation = 69.224854 kcal Electronic energy + Delta-G solvation = -21256.412766 eV Core-core repulsion = 18000.485807 eV Total energy + Delta-G solvation = -3255.926959 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.67639 -40.48144 -39.97201 -37.11044 -34.87607 -34.21672 -32.25714 -31.97373 -31.58895 -28.75913 -27.61358 -27.37312 -24.29762 -23.37422 -22.99704 -21.62980 -21.16956 -19.58390 -18.76053 -17.87822 -17.49964 -16.99874 -16.58606 -16.03487 -15.96316 -15.81185 -15.44915 -14.85389 -14.69773 -14.53919 -14.46292 -14.26023 -14.20033 -13.90421 -13.64709 -13.05144 -12.96286 -12.85387 -12.35844 -12.25530 -12.09798 -11.95049 -11.67963 -11.23126 -10.88434 -10.81866 -10.27495 -9.89204 -9.81507 -9.04785 -8.60910 -6.33426 0.03813 0.23226 0.54799 1.11586 1.28677 1.38044 1.67962 1.73550 2.07300 2.16713 2.39904 2.82918 3.00669 3.25437 3.54211 3.76602 3.84520 4.08185 4.12988 4.18093 4.20386 4.32435 4.42499 4.58376 4.59095 4.65496 4.91307 4.92978 4.97183 5.19950 5.23598 5.35476 5.38161 5.57487 5.61704 5.73832 5.88291 5.92271 6.12413 6.35366 6.69687 6.83838 7.02245 7.54502 8.54729 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.039464 B = 0.003440 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.330285 B = 8136.616049 C = 8450.355011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C -0.125 4.125 4 C -0.102 4.102 5 C -0.032 4.032 6 C 0.062 3.938 7 C -0.163 4.163 8 C -0.022 4.022 9 C 0.526 3.474 10 O -0.591 6.591 11 N -0.467 5.467 12 C 0.026 3.974 13 C -0.338 4.338 14 H 0.054 0.946 15 C 0.018 3.982 16 N -0.901 5.901 17 Si 0.949 3.051 18 H -0.225 1.225 19 H -0.283 1.283 20 H -0.267 1.267 21 N -0.373 5.373 22 H 0.457 0.543 23 N -0.272 5.272 24 C -0.106 4.106 25 C -0.124 4.124 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.146 0.854 30 H 0.128 0.872 31 H 0.168 0.832 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.285 0.715 36 H 0.130 0.870 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.989 10.622 -1.001 25.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.087 4.087 3 C -0.143 4.143 4 C -0.121 4.121 5 C -0.034 4.034 6 C -0.094 4.094 7 C -0.191 4.191 8 C -0.150 4.150 9 C 0.315 3.685 10 O -0.473 6.473 11 N -0.188 5.188 12 C -0.116 4.116 13 C -0.466 4.466 14 H 0.072 0.928 15 C -0.187 4.187 16 N -0.538 5.538 17 Si 0.772 3.228 18 H -0.149 1.149 19 H -0.210 1.210 20 H -0.191 1.191 21 N -0.100 5.100 22 H 0.313 0.687 23 N -0.106 5.106 24 C -0.126 4.126 25 C -0.141 4.141 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.164 0.836 30 H 0.146 0.854 31 H 0.185 0.815 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.148 0.852 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.699 11.178 -0.957 25.320 hybrid contribution 1.356 -0.751 -0.446 1.613 sum -21.344 10.426 -1.403 23.796 Atomic orbital electron populations 1.20856 0.88994 1.03848 1.03223 1.20390 0.97740 0.92787 0.97785 1.21245 0.93180 0.98932 1.00913 1.21296 0.94854 0.97131 0.98806 1.17853 0.86663 0.95064 1.03820 1.20638 0.94153 0.88469 1.06113 1.22224 0.89355 1.00849 1.06717 1.21727 0.96032 0.84982 1.12264 1.17550 0.82109 0.86545 0.82338 1.90675 1.86306 1.15408 1.54895 1.43575 1.04660 1.06863 1.63722 1.22759 1.03612 0.81723 1.03507 1.18671 0.91925 1.19609 1.16386 0.92828 1.26240 0.94056 0.98244 1.00111 1.69761 1.01956 1.45201 1.36835 0.85881 0.78892 0.80088 0.77983 1.14922 1.20954 1.19139 1.44863 1.06808 1.05325 1.52968 0.68676 1.73184 0.90138 1.26937 1.20361 1.21311 0.95031 0.97075 0.99163 1.21229 0.93092 0.99015 1.00795 0.90186 0.90524 0.90465 0.83594 0.85412 0.81485 0.88597 0.89833 0.89868 0.90490 0.85190 0.83550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.01 71.23 0.71 -0.40 16 2 C -0.09 -1.43 5.88 -19.83 -0.12 -1.54 16 3 C -0.12 -2.24 9.68 22.24 0.22 -2.02 16 4 C -0.10 -2.33 9.69 22.48 0.22 -2.11 16 5 C -0.03 -0.86 5.88 -20.04 -0.12 -0.98 16 6 C 0.06 1.97 6.99 42.49 0.30 2.27 16 7 C -0.16 -5.77 10.20 22.87 0.23 -5.53 16 8 C -0.02 -0.85 6.72 40.71 0.27 -0.58 16 9 C 0.53 25.56 7.61 86.56 0.66 26.22 16 10 O -0.59 -33.80 16.85 -4.27 -0.07 -33.87 16 11 N -0.47 -22.36 2.53 -663.05 -1.68 -24.04 16 12 C 0.03 0.91 7.42 127.77 0.95 1.86 16 13 C -0.34 -19.41 9.32 84.11 0.78 -18.63 16 14 H 0.05 3.59 7.99 -2.91 -0.02 3.57 16 15 C 0.02 0.95 5.36 84.96 0.46 1.41 16 16 N -0.90 -51.88 13.95 21.68 0.30 -51.57 16 17 Si 0.95 39.88 24.98 68.60 1.71 41.59 16 18 H -0.22 -7.80 6.51 99.48 0.65 -7.16 16 19 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 21 N -0.37 -11.80 5.94 -48.08 -0.29 -12.08 16 22 H 0.46 11.77 4.95 -220.02 -1.09 10.68 16 23 N -0.27 -8.52 11.82 -48.24 -0.57 -9.09 16 24 C -0.11 -2.45 9.58 22.48 0.22 -2.24 16 25 C -0.12 -2.25 9.68 22.24 0.22 -2.04 16 26 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 28 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 29 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 30 H 0.13 2.84 7.86 -2.91 -0.02 2.82 16 31 H 0.17 5.58 7.43 -2.91 -0.02 5.56 16 32 H 0.10 2.65 7.73 -2.38 -0.02 2.63 16 33 H 0.08 2.94 3.42 -2.39 -0.01 2.93 16 34 H 0.08 2.42 5.23 -2.39 -0.01 2.40 16 35 H 0.29 14.92 8.31 -92.70 -0.77 14.15 16 36 H 0.13 2.84 7.10 -2.91 -0.02 2.82 16 37 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -73.58 311.28 4.37 -69.21 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -0.03 Total: 24.16 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 4.99 Total: -4.32 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -2.23 Total: -96.78 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.07 Total: -33.87 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 1.71 Total: 41.59 kcal Total: -73.58 4.37 -69.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101515481.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.435 kcal (2) G-P(sol) polarization free energy of solvation -73.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds