Wall clock time and date at job start Tue Mar 31 2020 05:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39920 * 126.03854 * 2 1 4 4 N 1.30893 * 108.24473 * 179.97438 * 3 2 1 5 5 N 1.40085 * 108.21639 * 0.02562 * 4 3 2 6 6 C 1.40128 * 126.05061 * 180.02562 * 5 4 3 7 7 C 1.38695 * 120.10781 * 174.97265 * 6 5 4 8 8 C 1.38187 * 120.01131 * 179.97438 * 7 6 5 9 9 C 1.38433 * 120.24213 * 359.95639 * 8 7 6 10 10 C 1.50701 * 119.88265 * 180.02562 * 9 8 7 11 11 C 1.38059 * 120.22484 * 0.02562 * 9 8 7 12 12 C 1.38956 * 119.98374 * 359.76862 * 11 9 8 13 13 N 1.39442 * 120.12170 * 180.23120 * 12 11 9 14 14 C 1.34774 * 120.00501 * 34.87418 * 13 12 11 15 15 O 1.21767 * 119.99397 * 5.29983 * 14 13 12 16 16 C 1.41806 * 120.00498 * 185.30559 * 14 13 12 17 17 H 1.08002 * 119.99645 * 359.97438 * 16 14 13 18 18 C 1.40129 * 120.00230 * 180.02562 * 16 14 13 19 19 N 1.30628 * 120.00363 * 359.97438 * 18 16 14 20 20 Si 1.86809 * 120.00177 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46853 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47117 * 119.99421 * 20 18 16 23 23 H 1.48498 * 109.46912 * 239.99774 * 20 18 16 24 24 C 1.35224 * 107.89818 * 359.97438 * 5 4 3 25 25 H 1.09001 * 109.47078 * 270.02503 * 1 2 3 26 26 H 1.08996 * 109.46937 * 30.02469 * 1 2 3 27 27 H 1.08996 * 109.47685 * 150.03022 * 1 2 3 28 28 H 1.08000 * 125.87294 * 0.02562 * 3 2 1 29 29 H 1.07997 * 119.99826 * 359.96966 * 7 6 5 30 30 H 1.08004 * 119.87719 * 179.97438 * 8 7 6 31 31 H 1.08996 * 109.47388 * 90.00153 * 10 9 8 32 32 H 1.09002 * 109.46962 * 209.99652 * 10 9 8 33 33 H 1.08999 * 109.47444 * 329.99194 * 10 9 8 34 34 H 1.08002 * 120.00537 * 180.02562 * 11 9 8 35 35 H 0.97004 * 119.99886 * 214.87591 * 13 12 11 36 36 H 0.96998 * 120.00581 * 180.02562 * 19 18 16 37 37 H 1.08000 * 126.14638 * 180.26232 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3302 1.1314 0.0000 4 7 3.5765 0.7314 0.0006 5 7 3.5868 -0.6694 0.0003 6 6 4.7258 -1.4857 0.0013 7 6 4.5950 -2.8624 0.1061 8 6 5.7195 -3.6656 0.1063 9 6 6.9793 -3.1013 0.0012 10 6 8.2001 -3.9849 0.0017 11 6 7.1209 -1.7321 -0.1040 12 6 5.9963 -0.9160 -0.1095 13 7 6.1358 0.4670 -0.2204 14 6 7.1217 0.9863 -0.9785 15 8 7.8300 0.2516 -1.6428 16 6 7.3343 2.3881 -1.0025 17 1 6.7059 3.0397 -0.4135 18 6 8.3591 2.9280 -1.7912 19 7 9.1189 2.1400 -2.5040 20 14 8.6387 4.7748 -1.8233 21 1 7.6511 5.4404 -0.9363 22 1 10.0132 5.0756 -1.3483 23 1 8.4738 5.2762 -3.2113 24 6 2.3031 -1.0944 0.0002 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3634 -0.8902 -0.5133 28 1 1.9948 2.1580 0.0004 29 1 3.6141 -3.3070 0.1876 30 1 5.6151 -4.7374 0.1884 31 1 8.4419 -4.2711 -1.0219 32 1 9.0405 -3.4431 0.4355 33 1 8.0010 -4.8794 0.5918 34 1 8.1054 -1.2957 -0.1862 35 1 5.5232 1.0554 0.2481 36 1 9.8285 2.5136 -3.0496 37 1 1.9725 -2.1226 0.0040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154013755.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:27 Heat of formation + Delta-G solvation = 70.129847 kcal Electronic energy + Delta-G solvation = -21905.710449 eV Core-core repulsion = 18649.822733 eV Total energy + Delta-G solvation = -3255.887716 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.33247 -39.19129 -37.17133 -34.26039 -33.32697 -32.31331 -31.81726 -30.33256 -29.22786 -27.20430 -26.43673 -25.33393 -22.65270 -22.14049 -20.44056 -20.01469 -19.44241 -17.47487 -17.32875 -15.77269 -15.53990 -15.18984 -14.85239 -14.52814 -14.07862 -13.88233 -13.47852 -13.20980 -13.15768 -12.96891 -12.88180 -12.60877 -12.47424 -11.91679 -11.82772 -11.62361 -11.40416 -11.19659 -11.08333 -10.88683 -10.61798 -10.35512 -10.21722 -9.78504 -9.30426 -8.87003 -8.65601 -7.86288 -7.61250 -6.87449 -6.34272 -4.84681 1.25097 1.89463 2.51667 2.71925 2.92298 3.06227 3.14859 3.20259 4.00919 4.13537 4.49985 4.63703 4.72221 4.95266 5.12056 5.28107 5.33099 5.42418 5.58654 5.66584 5.70220 5.75313 5.80228 5.90170 5.93557 5.98517 6.11940 6.21980 6.27652 6.42118 6.55825 6.76949 6.88386 7.06116 7.25881 7.29386 7.50263 7.86841 8.01132 8.14416 8.25140 8.84655 9.38322 10.42188 10.63273 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.012301 B = 0.006381 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.643029 B = 4387.010854 C = 6519.003646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.243 4.243 3 C 0.048 3.952 4 N -0.282 5.282 5 N -0.295 5.295 6 C 0.071 3.929 7 C -0.111 4.111 8 C -0.148 4.148 9 C -0.070 4.070 10 C -0.108 4.108 11 C -0.115 4.115 12 C 0.212 3.788 13 N -0.686 5.686 14 C 0.543 3.457 15 O -0.571 6.571 16 C -0.532 4.532 17 H 0.070 0.930 18 C 0.088 3.912 19 N -0.749 5.749 20 Si 0.912 3.088 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.274 1.274 24 C 0.046 3.954 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.184 0.816 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.146 0.854 35 H 0.406 0.594 36 H 0.271 0.729 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.470 -7.382 6.068 14.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.254 4.254 3 C -0.138 4.138 4 N -0.103 5.103 5 N -0.069 5.069 6 C -0.024 4.024 7 C -0.132 4.132 8 C -0.168 4.168 9 C -0.072 4.072 10 C -0.165 4.165 11 C -0.136 4.136 12 C 0.109 3.891 13 N -0.332 5.332 14 C 0.352 3.648 15 O -0.455 6.455 16 C -0.567 4.567 17 H 0.089 0.911 18 C -0.135 4.135 19 N -0.376 5.376 20 Si 0.736 3.264 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.098 4.098 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.201 0.799 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.164 0.836 35 H 0.247 0.753 36 H 0.082 0.918 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -9.462 -7.430 5.448 13.206 hybrid contribution -1.140 0.979 0.044 1.504 sum -10.602 -6.451 5.492 13.571 Atomic orbital electron populations 1.20004 0.89309 1.01987 1.01271 1.20072 0.96945 0.91758 1.16655 1.23895 0.89830 0.99890 1.00189 1.77155 1.21027 0.87989 1.24099 1.45619 1.03851 1.04324 1.53123 1.17499 0.83241 0.88923 1.12736 1.20380 0.99262 0.89952 1.03601 1.20519 0.91178 0.98843 1.06284 1.19827 0.94921 0.93817 0.98599 1.20731 0.95416 0.98196 1.02174 1.21156 0.99086 0.92039 1.01354 1.17664 0.90156 0.86957 0.94348 1.44600 1.35722 1.02144 1.50779 1.17102 0.78948 0.89780 0.78968 1.90642 1.47973 1.61577 1.45274 1.20091 1.16751 0.91525 1.28314 0.91130 1.25763 0.94451 0.99818 0.93428 1.70024 1.13009 1.36084 1.18516 0.86244 0.78897 0.82488 0.78800 1.18496 1.19907 1.19949 1.22262 0.83705 1.00112 1.03744 0.92306 0.91917 0.92351 0.79881 0.86070 0.85998 0.91204 0.91508 0.91993 0.83650 0.75302 0.91790 0.81160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.37 36.00 0.37 -0.27 16 2 C -0.24 -3.28 6.10 -105.03 -0.64 -3.92 16 3 C 0.05 0.73 11.96 -17.32 -0.21 0.52 16 4 N -0.28 -5.46 9.27 30.64 0.28 -5.17 16 5 N -0.30 -5.43 3.80 -10.54 -0.04 -5.47 16 6 C 0.07 1.38 6.70 -83.36 -0.56 0.82 16 7 C -0.11 -1.74 9.45 -39.43 -0.37 -2.11 16 8 C -0.15 -2.23 9.69 -39.53 -0.38 -2.61 16 9 C -0.07 -1.21 5.88 -104.62 -0.62 -1.83 16 10 C -0.11 -1.50 10.01 36.01 0.36 -1.14 16 11 C -0.11 -2.48 8.29 -39.38 -0.33 -2.81 16 12 C 0.21 4.82 6.26 -83.59 -0.52 4.30 16 13 N -0.69 -17.21 4.73 -12.31 -0.06 -17.27 16 14 C 0.54 15.85 7.30 -14.90 -0.11 15.74 16 15 O -0.57 -18.25 12.67 5.13 0.06 -18.18 16 16 C -0.53 -15.21 9.32 -37.51 -0.35 -15.56 16 17 H 0.07 1.89 7.85 -52.49 -0.41 1.47 16 18 C 0.09 2.43 5.50 -17.35 -0.10 2.33 16 19 N -0.75 -22.00 11.73 55.55 0.65 -21.35 16 20 Si 0.91 19.96 29.56 -169.99 -5.02 14.93 16 21 H -0.26 -5.56 7.11 56.52 0.40 -5.15 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 C 0.05 0.67 10.70 -17.09 -0.18 0.49 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.18 2.20 8.06 -52.49 -0.42 1.78 16 29 H 0.12 1.47 6.76 -52.49 -0.35 1.11 16 30 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 33 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 34 H 0.15 3.55 6.53 -52.49 -0.34 3.20 16 35 H 0.41 9.66 6.08 -40.82 -0.25 9.42 16 36 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 37 H 0.17 1.84 7.07 -52.49 -0.37 1.47 16 LS Contribution 318.03 15.07 4.79 4.79 Total: -1.00 -34.80 318.03 -7.20 -42.00 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -4.24 Total: 11.76 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -3.63 Total: -6.04 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: 0.84 Total: -49.26 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.06 Total: -18.18 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.80 -7.20 -42.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154013755.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.132 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds