Wall clock time and date at job start Tue Mar 31 2020 05:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38036 * 120.05863 * 2 1 4 4 C 1.38307 * 120.11951 * 179.69671 * 3 2 1 5 5 C 1.38356 * 120.24663 * 0.59482 * 4 3 2 6 6 C 1.37993 * 120.11900 * 359.68326 * 5 4 3 7 7 C 1.39334 * 120.06640 * 180.27066 * 2 1 3 8 8 C 1.48388 * 120.11804 * 0.02612 * 7 2 1 9 9 C 1.40407 * 125.86468 * 173.75058 * 8 7 2 10 10 C 1.36464 * 107.78464 * 179.83352 * 9 8 7 11 11 N 1.38531 * 126.19986 * 180.12309 * 10 9 8 12 12 C 1.34769 * 119.99872 * 0.35773 * 11 10 9 13 13 O 1.21826 * 120.00697 * 359.97438 * 12 11 10 14 14 C 1.41438 * 119.99749 * 180.02562 * 12 11 10 15 15 H 1.08000 * 119.99943 * 359.97438 * 14 12 11 16 16 C 1.40155 * 119.99695 * 179.97438 * 14 12 11 17 17 N 1.30621 * 120.00149 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99700 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47019 * 90.00207 * 18 16 14 20 20 H 1.48507 * 109.47054 * 209.99857 * 18 16 14 21 21 H 1.48495 * 109.47357 * 330.00007 * 18 16 14 22 22 N 1.36216 * 107.59805 * 0.42315 * 10 9 8 23 23 C 1.46506 * 126.01895 * 179.71410 * 22 10 9 24 24 N 1.31862 * 125.86702 * 354.05721 * 8 7 2 25 25 H 1.08994 * 109.47358 * 263.37752 * 1 2 3 26 26 H 1.09003 * 109.46722 * 143.38100 * 1 2 3 27 27 H 1.08999 * 109.47283 * 23.38635 * 1 2 3 28 28 H 1.07997 * 119.93906 * 359.97438 * 3 2 1 29 29 H 1.08004 * 119.87745 * 180.30125 * 4 3 2 30 30 H 1.08000 * 119.93916 * 179.70176 * 5 4 3 31 31 H 1.08003 * 120.05992 * 179.97438 * 6 5 4 32 32 H 1.07999 * 126.10751 * 359.97438 * 9 8 7 33 33 H 0.97002 * 119.99812 * 180.35802 * 11 10 9 34 34 H 0.96999 * 119.99908 * 179.97438 * 17 16 14 35 35 H 1.09002 * 109.46941 * 269.99923 * 23 22 10 36 36 H 1.08999 * 109.47036 * 29.99554 * 23 22 10 37 37 H 1.08996 * 109.47301 * 150.00244 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1947 0.0000 4 6 3.5815 1.1962 0.0063 5 6 4.2797 0.0018 0.0003 6 6 3.5987 -1.1984 -0.0055 7 6 2.2051 -1.2058 -0.0057 8 6 1.4673 -2.4933 -0.0124 9 6 2.0397 -3.7688 -0.1423 10 6 1.0298 -4.6854 -0.0974 11 7 1.1685 -6.0608 -0.1886 12 6 2.3926 -6.6067 -0.3295 13 8 3.3771 -5.8907 -0.3771 14 6 2.5342 -8.0108 -0.4231 15 1 1.6613 -8.6455 -0.3812 16 6 3.8071 -8.5785 -0.5701 17 7 4.8628 -7.8108 -0.6202 18 14 3.9942 -10.4331 -0.6930 19 1 3.9184 -10.8448 -2.1178 20 1 5.3080 -10.8364 -0.1304 21 1 2.9049 -11.0922 0.0713 22 7 -0.1401 -4.0026 0.0465 23 6 -1.4777 -4.5939 0.1329 24 7 0.1610 -2.6357 0.0971 25 1 -0.3634 -0.1185 1.0207 26 1 -0.3633 -0.8249 -0.6130 27 1 -0.3634 0.9432 -0.4079 28 1 1.6584 2.1300 -0.0004 29 1 4.1185 2.1333 0.0112 30 1 5.3597 0.0087 0.0004 31 1 4.1447 -2.1302 -0.0106 32 1 3.0916 -3.9858 -0.2552 33 1 0.3846 -6.6308 -0.1510 34 1 5.7438 -8.2038 -0.7217 35 1 -1.9012 -4.6822 -0.8676 36 1 -1.4094 -5.5824 0.5871 37 1 -2.1178 -3.9569 0.7433 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187586506.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:37 Heat of formation + Delta-G solvation = 68.415050 kcal Electronic energy + Delta-G solvation = -21589.176903 eV Core-core repulsion = 18333.214828 eV Total energy + Delta-G solvation = -3255.962075 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.61523 -38.86061 -37.54498 -33.94786 -33.07098 -32.41902 -32.20970 -30.47555 -28.55734 -26.93972 -26.34463 -25.72840 -22.77742 -21.49681 -21.14451 -19.61596 -18.96282 -17.64425 -16.56537 -15.78219 -15.63065 -15.17087 -15.08910 -14.64869 -14.11667 -13.90599 -13.56173 -13.19307 -13.08256 -12.96816 -12.73030 -12.44318 -12.17958 -11.87826 -11.77990 -11.71932 -11.47338 -11.20636 -10.98498 -10.78699 -10.74660 -10.43630 -9.93933 -9.70512 -9.12360 -8.86290 -8.45791 -7.79249 -7.66878 -7.02741 -6.47530 -5.01955 1.32127 1.66730 2.68254 2.88206 3.00763 3.08109 3.11197 3.56049 3.90323 4.27665 4.38054 4.40447 4.85415 5.09677 5.11984 5.18998 5.32382 5.38170 5.55252 5.58050 5.63021 5.69982 5.94381 5.99683 6.11764 6.16746 6.24053 6.39146 6.58137 6.65050 6.72567 6.92359 7.02681 7.08020 7.16837 7.26083 7.58200 7.69902 7.93001 8.09492 8.39835 8.69770 9.14883 10.27203 10.46159 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.021863 B = 0.004295 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.400595 B = 6517.208138 C = 7771.947628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.065 4.065 3 C -0.130 4.130 4 C -0.119 4.119 5 C -0.130 4.130 6 C -0.087 4.087 7 C -0.004 4.004 8 C 0.115 3.885 9 C -0.287 4.287 10 C 0.346 3.654 11 N -0.671 5.671 12 C 0.547 3.453 13 O -0.551 6.551 14 C -0.534 4.534 15 H 0.071 0.929 16 C 0.088 3.912 17 N -0.743 5.743 18 Si 0.916 3.084 19 H -0.269 1.269 20 H -0.276 1.276 21 H -0.263 1.263 22 N -0.410 5.410 23 C 0.109 3.891 24 N -0.310 5.310 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.052 0.948 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.134 0.866 32 H 0.177 0.823 33 H 0.390 0.610 34 H 0.275 0.725 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.079 9.356 1.119 11.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.067 4.067 3 C -0.148 4.148 4 C -0.138 4.138 5 C -0.148 4.148 6 C -0.107 4.107 7 C -0.006 4.006 8 C -0.047 4.047 9 C -0.319 4.319 10 C 0.125 3.875 11 N -0.318 5.318 12 C 0.356 3.644 13 O -0.432 6.432 14 C -0.570 4.570 15 H 0.089 0.911 16 C -0.135 4.135 17 N -0.370 5.370 18 Si 0.739 3.261 19 H -0.194 1.194 20 H -0.201 1.201 21 H -0.187 1.187 22 N -0.201 5.201 23 C -0.033 4.033 24 N -0.134 5.134 25 H 0.086 0.914 26 H 0.109 0.891 27 H 0.071 0.929 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.152 0.848 32 H 0.194 0.806 33 H 0.223 0.777 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.371 10.257 1.202 12.688 hybrid contribution 0.252 -1.775 -0.112 1.796 sum -7.119 8.483 1.090 11.127 Atomic orbital electron populations 1.20937 0.90723 1.02271 1.02951 1.20036 0.96504 0.92023 0.98122 1.20895 0.94192 0.97035 1.02722 1.21129 0.94213 0.97873 1.00578 1.21033 0.99829 0.92183 1.01755 1.21328 0.93094 0.98893 0.97398 1.17845 0.92248 0.89210 1.01250 1.20445 0.91008 0.93169 1.00044 1.21711 1.01224 0.88338 1.20641 1.18565 0.86378 0.85698 0.96900 1.43841 1.12157 1.00650 1.75159 1.16976 0.79495 0.89413 0.78470 1.90588 1.35951 1.62035 1.54632 1.19875 0.94162 0.90464 1.52478 0.91055 1.25746 0.95160 1.00168 0.92468 1.69986 0.99045 1.36633 1.31323 0.86232 0.78578 0.81997 0.79250 1.19429 1.20114 1.18679 1.48670 1.04762 1.04237 1.62398 1.21600 0.81009 0.98261 1.02472 1.77551 1.14369 0.91063 1.30429 0.91376 0.89089 0.92923 0.86350 0.86440 0.85957 0.84809 0.80605 0.77748 0.91397 0.91647 0.90469 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 8.84 36.01 0.32 -1.28 16 2 C -0.07 -1.03 5.91 -104.29 -0.62 -1.65 16 3 C -0.13 -1.74 9.66 -39.63 -0.38 -2.12 16 4 C -0.12 -1.52 10.04 -39.51 -0.40 -1.91 16 5 C -0.13 -1.82 10.03 -39.63 -0.40 -2.22 16 6 C -0.09 -1.48 9.57 -39.25 -0.38 -1.86 16 7 C 0.00 -0.07 5.88 -104.89 -0.62 -0.68 16 8 C 0.12 2.37 6.81 -82.86 -0.56 1.81 16 9 C -0.29 -6.69 9.00 -39.41 -0.35 -7.04 16 10 C 0.35 7.62 7.67 -153.08 -1.17 6.44 16 11 N -0.67 -14.87 5.37 -14.04 -0.08 -14.95 16 12 C 0.55 14.75 7.52 -15.05 -0.11 14.63 16 13 O -0.55 -16.63 11.96 5.08 0.06 -16.57 16 14 C -0.53 -13.95 9.29 -37.65 -0.35 -14.30 16 15 H 0.07 1.67 7.85 -52.49 -0.41 1.26 16 16 C 0.09 2.28 5.50 -17.35 -0.10 2.18 16 17 N -0.74 -20.64 11.72 55.56 0.65 -19.99 16 18 Si 0.92 18.60 29.56 -169.99 -5.02 13.57 16 19 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 20 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 22 N -0.41 -7.67 4.05 -67.10 -0.27 -7.94 16 23 C 0.11 1.40 11.29 59.85 0.68 2.08 16 24 N -0.31 -6.02 9.26 33.37 0.31 -5.71 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.09 1.46 5.80 -51.93 -0.30 1.16 16 27 H 0.05 0.61 8.04 -51.93 -0.42 0.20 16 28 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 29 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 30 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.13 2.37 7.05 -52.48 -0.37 2.00 16 32 H 0.18 4.56 5.10 -52.49 -0.27 4.29 16 33 H 0.39 7.16 7.92 -40.82 -0.32 6.84 16 34 H 0.28 6.89 8.29 -40.82 -0.34 6.55 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.86 7.51 -51.93 -0.39 0.47 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 316.42 15.07 4.77 4.77 Total: -1.00 -32.69 316.42 -8.18 -40.87 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -4.15 Total: 11.88 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -4.44 Total: -5.92 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.61 Total: -48.60 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.06 Total: -16.57 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.02 Total: 13.57 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.69 -8.18 -40.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187586506.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.287 kcal (2) G-P(sol) polarization free energy of solvation -32.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds