Wall clock time and date at job start Tue Mar 31 2020 05:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39954 * 126.01273 * 2 1 4 4 N 1.30826 * 108.36722 * 179.97438 * 3 2 1 5 5 N 1.40091 * 108.25331 * 359.97438 * 4 3 2 6 6 C 1.39831 * 126.10486 * 180.02562 * 5 4 3 7 7 C 1.39075 * 119.91592 * 179.70248 * 6 5 4 8 8 C 1.37704 * 120.08252 * 179.76199 * 7 6 5 9 9 C 1.39773 * 119.91349 * 0.49012 * 8 7 6 10 10 C 1.47555 * 120.08230 * 179.74119 * 9 8 7 11 11 O 1.21615 * 119.99985 * 137.69085 * 10 9 8 12 12 N 1.34773 * 119.99975 * 317.69504 * 10 9 8 13 13 C 1.46502 * 119.99775 * 182.02853 * 12 10 9 14 14 C 1.36879 * 120.00110 * 2.03277 * 12 10 9 15 15 H 1.07995 * 119.99887 * 310.59756 * 14 12 10 16 16 C 1.39043 * 120.00035 * 130.59788 * 14 12 10 17 17 N 1.31370 * 119.99652 * 170.17637 * 16 14 12 18 18 Si 1.86801 * 119.99801 * 350.17442 * 16 14 12 19 19 H 1.48495 * 109.47091 * 94.75100 * 18 16 14 20 20 H 1.48498 * 109.46782 * 214.74900 * 18 16 14 21 21 H 1.48501 * 109.47165 * 334.75199 * 18 16 14 22 22 C 1.39775 * 119.83555 * 359.75839 * 9 8 7 23 23 C 1.37706 * 119.91484 * 0.02562 * 22 9 8 24 24 C 1.35285 * 126.02067 * 179.68963 * 2 1 3 25 25 H 1.08997 * 109.46806 * 90.02663 * 1 2 3 26 26 H 1.08998 * 109.46741 * 210.02355 * 1 2 3 27 27 H 1.09004 * 109.46917 * 330.02315 * 1 2 3 28 28 H 1.08004 * 125.81779 * 359.96314 * 3 2 1 29 29 H 1.08001 * 119.95877 * 359.97438 * 7 6 5 30 30 H 1.08005 * 120.04194 * 180.24882 * 8 7 6 31 31 H 1.09001 * 109.46515 * 84.70720 * 13 12 10 32 32 H 1.08997 * 109.46942 * 204.70524 * 13 12 10 33 33 H 1.08999 * 109.47625 * 324.70847 * 13 12 10 34 34 H 0.97000 * 119.99455 * 180.02562 * 17 16 14 35 35 H 1.08007 * 120.04345 * 179.97438 * 22 9 8 36 36 H 1.07994 * 119.95557 * 179.97438 * 23 22 9 37 37 H 1.07999 * 126.18761 * 0.03674 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1321 0.0000 4 7 3.5766 0.7355 0.0006 5 7 3.5915 -0.6653 0.0015 6 6 4.7299 -1.4773 0.0028 7 6 4.5946 -2.8614 0.0100 8 6 5.7134 -3.6643 0.0063 9 6 6.9861 -3.0864 0.0059 10 6 8.1874 -3.9432 0.0077 11 8 9.1350 -3.6633 -0.7013 12 7 8.2345 -5.0359 0.7952 13 6 9.4441 -5.8617 0.8305 14 6 7.1522 -5.3742 1.5619 15 1 6.6769 -4.6298 2.1833 16 6 6.6649 -6.6763 1.5406 17 7 5.7564 -7.0518 2.4120 18 14 7.3019 -7.8913 0.2728 19 1 8.4088 -8.6868 0.8620 20 1 6.2021 -8.8011 -0.1371 21 1 7.8011 -7.1519 -0.9144 22 6 7.1180 -1.6949 0.0039 23 6 5.9945 -0.8986 0.0031 24 6 2.3026 -1.0942 0.0059 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5135 28 1 1.9931 2.1583 -0.0006 29 1 3.6109 -3.3072 0.0149 30 1 5.6076 -4.7391 0.0078 31 1 10.1514 -5.4396 1.5443 32 1 9.1831 -6.8756 1.1338 33 1 9.8977 -5.8844 -0.1604 34 1 5.4167 -7.9603 2.3974 35 1 8.0998 -1.2448 0.0040 36 1 6.0956 0.1766 0.0020 37 1 1.9726 -2.1225 0.0109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334251889.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:29 Heat of formation + Delta-G solvation = 66.494522 kcal Electronic energy + Delta-G solvation = -21600.897969 eV Core-core repulsion = 18344.852613 eV Total energy + Delta-G solvation = -3256.045355 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.52134 -41.12801 -39.30704 -36.89526 -34.80106 -33.99131 -32.84933 -32.08348 -30.79412 -28.52928 -27.42086 -26.70361 -24.57211 -23.73330 -22.17589 -21.06022 -20.89927 -19.60843 -18.83919 -18.14690 -17.14722 -16.53397 -16.36626 -16.25967 -16.03554 -15.45028 -15.07877 -14.69523 -14.61155 -14.50249 -14.20495 -14.11125 -14.00977 -13.90167 -13.40467 -13.28516 -13.23602 -12.81571 -12.75697 -12.30565 -12.15626 -11.93201 -11.57373 -11.26451 -11.22049 -10.69126 -10.07234 -9.94677 -9.67837 -8.92555 -8.49677 -6.28765 -0.38317 0.34629 1.01691 1.22220 1.33814 1.35299 1.43890 1.77996 1.88765 2.17439 2.54763 2.75683 2.97892 3.43496 3.77489 3.92389 3.95346 3.99871 4.27155 4.33450 4.34564 4.42502 4.47135 4.53832 4.69991 4.75746 4.77942 5.01286 5.02208 5.13232 5.18046 5.27162 5.31944 5.41814 5.49493 5.63240 5.76891 6.04810 6.16116 6.17038 6.62274 6.88950 7.25882 7.64684 8.61606 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.022514 B = 0.004507 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.355400 B = 6211.637040 C = 7158.229241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.230 4.230 3 C 0.059 3.941 4 N -0.326 5.326 5 N -0.336 5.336 6 C 0.169 3.831 7 C -0.149 4.149 8 C -0.030 4.030 9 C -0.132 4.132 10 C 0.521 3.479 11 O -0.613 6.613 12 N -0.474 5.474 13 C 0.071 3.929 14 C -0.340 4.340 15 H 0.077 0.923 16 C 0.040 3.960 17 N -0.893 5.893 18 Si 0.926 3.074 19 H -0.257 1.257 20 H -0.280 1.280 21 H -0.269 1.269 22 C -0.056 4.056 23 C -0.136 4.136 24 C 0.037 3.963 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.221 0.779 29 H 0.154 0.846 30 H 0.138 0.862 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.282 0.718 35 H 0.138 0.862 36 H 0.146 0.854 37 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.271 9.333 -4.042 14.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.240 4.240 3 C -0.128 4.128 4 N -0.145 5.145 5 N -0.112 5.112 6 C 0.075 3.925 7 C -0.170 4.170 8 C -0.049 4.049 9 C -0.136 4.136 10 C 0.312 3.688 11 O -0.500 6.500 12 N -0.194 5.194 13 C -0.071 4.071 14 C -0.467 4.467 15 H 0.095 0.905 16 C -0.165 4.165 17 N -0.529 5.529 18 Si 0.751 3.249 19 H -0.182 1.182 20 H -0.206 1.206 21 H -0.194 1.194 22 C -0.075 4.075 23 C -0.156 4.156 24 C -0.103 4.103 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.237 0.763 29 H 0.172 0.828 30 H 0.156 0.844 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.156 0.844 36 H 0.163 0.837 37 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -8.648 9.587 -4.268 13.598 hybrid contribution -0.308 -1.161 -0.120 1.207 sum -8.956 8.426 -4.388 13.056 Atomic orbital electron populations 1.20162 0.86347 1.03548 1.02704 1.20660 0.98914 0.90900 1.13548 1.24648 0.89037 1.01799 0.97357 1.77352 1.23222 0.88271 1.25606 1.45896 1.04336 1.04570 1.56396 1.17755 0.85037 0.89110 1.00562 1.20862 1.00453 0.90072 1.05619 1.21379 0.90313 1.00971 0.92230 1.19899 0.93762 0.94064 1.05865 1.18763 0.87150 0.83341 0.79570 1.90619 1.39811 1.75072 1.44514 1.43628 1.13532 1.24155 1.38106 1.21906 0.88181 0.95119 1.01912 1.18769 1.07684 0.97258 1.23020 0.90538 1.25908 0.94957 0.98715 0.96941 1.69713 1.29007 1.20104 1.34101 0.86096 0.78696 0.79548 0.80598 1.18215 1.20609 1.19353 1.21072 0.99213 0.91259 0.95972 1.20703 0.89648 1.00871 1.04363 1.23159 0.82748 1.02211 1.02180 0.90884 0.91193 0.90132 0.76264 0.82811 0.84400 0.91660 0.91709 0.91737 0.90755 0.84383 0.83666 0.78570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.37 71.24 0.74 -0.12 16 2 C -0.23 -4.61 6.10 -20.13 -0.12 -4.73 16 3 C 0.06 1.26 11.95 85.26 1.02 2.28 16 4 N -0.33 -9.50 11.85 -56.97 -0.67 -10.18 16 5 N -0.34 -10.10 3.81 -187.26 -0.71 -10.82 16 6 C 0.17 5.61 6.69 38.27 0.26 5.87 16 7 C -0.15 -4.99 9.44 22.34 0.21 -4.78 16 8 C -0.03 -1.18 8.09 22.51 0.18 -1.00 16 9 C -0.13 -5.63 5.28 -20.08 -0.11 -5.74 16 10 C 0.52 24.95 7.27 86.70 0.63 25.58 16 11 O -0.61 -31.39 16.61 -4.08 -0.07 -31.46 16 12 N -0.47 -22.68 2.41 -662.51 -1.59 -24.28 16 13 C 0.07 3.00 8.82 127.77 1.13 4.13 16 14 C -0.34 -17.10 6.61 84.10 0.56 -16.54 16 15 H 0.08 4.23 7.49 -2.91 -0.02 4.21 16 16 C 0.04 2.00 5.16 84.95 0.44 2.44 16 17 N -0.89 -46.60 13.95 21.68 0.30 -46.29 16 18 Si 0.93 39.56 24.88 68.60 1.71 41.27 16 19 H -0.26 -10.31 6.89 99.48 0.69 -9.63 16 20 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.27 -11.90 7.03 99.48 0.70 -11.20 16 22 C -0.06 -2.07 9.65 22.52 0.22 -1.85 16 23 C -0.14 -4.61 9.64 22.34 0.22 -4.39 16 24 C 0.04 0.89 10.72 83.39 0.89 1.79 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.22 2.84 8.06 -2.91 -0.02 2.82 16 29 H 0.15 4.18 6.72 -2.91 -0.02 4.16 16 30 H 0.14 5.94 6.27 -2.91 -0.02 5.92 16 31 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.06 2.65 4.28 -2.39 -0.01 2.64 16 33 H 0.06 2.65 7.56 -2.39 -0.02 2.63 16 34 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 35 H 0.14 4.85 8.06 -2.91 -0.02 4.82 16 36 H 0.15 4.54 7.68 -2.91 -0.02 4.51 16 37 H 0.20 3.64 7.04 -2.91 -0.02 3.62 16 Total: -1.00 -63.86 314.36 6.28 -57.58 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 1.07 Total: 21.25 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 6.26 Total: 2.93 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -2.68 Total: -91.57 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -0.07 Total: -31.46 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 1.71 Total: 41.27 kcal Total: -63.86 6.28 -57.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334251889.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.073 kcal (2) G-P(sol) polarization free energy of solvation -63.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds