Wall clock time and date at job start Tue Mar 31 2020 05:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.35041 * 126.38831 * 2 1 4 4 H 0.96998 * 124.87930 * 0.03850 * 3 2 1 5 5 N 1.28468 * 110.23869 * 180.02562 * 3 2 1 6 6 C 1.31836 * 110.06649 * 359.97438 * 5 3 2 7 7 C 1.47659 * 126.51836 * 179.97438 * 6 5 3 8 8 O 1.21585 * 120.00028 * 180.02562 * 7 6 5 9 9 N 1.34783 * 120.00053 * 0.02683 * 7 6 5 10 10 C 1.39135 * 119.99942 * 174.42996 * 9 7 6 11 11 C 1.39507 * 119.83362 * 145.27519 * 10 9 7 12 12 C 1.36367 * 120.16441 * 180.27548 * 11 10 9 13 13 C 1.40884 * 119.82683 * 359.47903 * 12 11 10 14 14 C 1.41145 * 120.15790 * 180.25221 * 13 12 11 15 15 H 1.08000 * 119.99630 * 34.65848 * 14 13 12 16 16 C 1.39904 * 119.99868 * 214.66263 * 14 13 12 17 17 N 1.30870 * 120.00137 * 5.42504 * 16 14 13 18 18 Si 1.86796 * 119.99942 * 185.43076 * 16 14 13 19 19 H 1.48502 * 109.47162 * 59.99855 * 18 16 14 20 20 H 1.48506 * 109.47123 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47075 * 299.99982 * 18 16 14 22 22 C 1.40879 * 119.67880 * 0.49616 * 13 12 11 23 23 C 1.36363 * 119.82874 * 359.75641 * 22 13 12 24 24 C 1.35366 * 126.37985 * 180.34615 * 2 1 3 25 25 C 1.50695 * 127.24880 * 359.94006 * 24 2 1 26 26 H 1.09001 * 109.47169 * 89.97167 * 1 2 3 27 27 H 1.09004 * 109.47465 * 209.97535 * 1 2 3 28 28 H 1.09003 * 109.46555 * 329.96894 * 1 2 3 29 29 H 0.96993 * 119.99796 * 354.42519 * 9 7 6 30 30 H 1.07998 * 119.91719 * 359.97438 * 11 10 9 31 31 H 1.07997 * 120.08370 * 179.70227 * 12 11 10 32 32 H 0.96992 * 120.00524 * 180.02562 * 17 16 14 33 33 H 1.08001 * 120.08317 * 179.73883 * 22 13 12 34 34 H 1.07995 * 119.91479 * 180.02562 * 23 22 13 35 35 H 1.09004 * 109.47645 * 270.20332 * 25 24 2 36 36 H 1.08999 * 109.47388 * 30.20862 * 25 24 2 37 37 H 1.09004 * 109.47088 * 150.20140 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3081 1.0871 0.0000 4 1 1.9966 2.0057 0.0005 5 7 3.5421 0.7298 -0.0005 6 6 3.6322 -0.5855 -0.0004 7 6 4.8761 -1.3811 -0.0014 8 8 4.8209 -2.5957 -0.0016 9 7 6.0727 -0.7609 -0.0021 10 6 7.2423 -1.5055 0.1140 11 6 8.3930 -1.1004 -0.5628 12 6 9.5414 -1.8282 -0.4583 13 6 9.5668 -2.9858 0.3442 14 6 10.7532 -3.7415 0.4616 15 1 11.7123 -3.2450 0.4556 16 6 10.6866 -5.1334 0.5855 17 7 9.5337 -5.7448 0.4862 18 14 12.2432 -6.1193 0.8927 19 1 12.8672 -5.6753 2.1650 20 1 11.9050 -7.5624 0.9850 21 1 13.1946 -5.9039 -0.2269 22 6 8.4010 -3.3884 1.0250 23 6 7.2586 -2.6533 0.9068 24 6 2.3099 -1.0898 -0.0066 25 6 1.8851 -2.5356 -0.0141 26 1 -0.3633 0.0005 -1.0277 27 1 -0.3634 -0.8902 0.5135 28 1 -0.3632 0.8898 0.5143 29 1 6.1185 0.2046 -0.0835 30 1 8.3729 -0.2108 -1.1748 31 1 10.4302 -1.5161 -0.9866 32 1 9.4874 -6.7097 0.5724 33 1 8.4119 -4.2770 1.6386 34 1 6.3641 -2.9603 1.4284 35 1 1.7801 -2.8889 1.0118 36 1 0.9302 -2.6312 -0.5308 37 1 2.6380 -3.1328 -0.5287 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335666619.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:04 Heat of formation + Delta-G solvation = 50.545555 kcal Electronic energy + Delta-G solvation = -21197.323329 eV Core-core repulsion = 17940.586374 eV Total energy + Delta-G solvation = -3256.736954 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.73305 -39.32083 -37.12923 -34.44518 -33.55105 -32.88923 -32.34699 -29.49543 -29.11945 -28.27667 -26.16196 -25.34373 -23.47964 -21.33262 -20.73436 -20.00327 -19.19322 -17.66873 -17.23036 -16.86199 -16.01478 -15.93461 -15.12627 -14.28266 -13.99071 -13.87100 -13.82827 -13.24735 -13.08328 -12.93162 -12.78464 -12.56688 -12.42960 -12.05621 -11.92521 -11.72749 -11.45269 -11.09002 -10.92142 -10.76860 -10.47084 -9.85945 -9.83924 -9.44782 -9.30522 -9.07787 -8.73000 -8.67492 -7.48406 -6.82904 -6.58469 -4.26053 1.63607 2.03672 2.75020 2.82473 3.11165 3.13708 3.16164 3.21023 3.76673 3.86250 4.03008 4.53335 4.54530 4.77525 4.80851 5.17427 5.23259 5.42547 5.51811 5.68797 5.72002 5.87766 6.00454 6.19651 6.21539 6.41493 6.57286 6.84347 6.90442 7.04996 7.09503 7.24034 7.34342 7.64330 7.70222 7.85599 7.98929 8.12440 8.28169 8.39027 8.69009 8.83333 8.97002 9.06108 10.36381 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.038263 B = 0.003324 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.596098 B = 8421.357051 C = 9037.709345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.001 3.999 3 N -0.384 5.384 4 H 0.442 0.558 5 N -0.263 5.263 6 C 0.001 3.999 7 C 0.584 3.416 8 O -0.516 6.516 9 N -0.639 5.639 10 C 0.007 3.993 11 C -0.109 4.109 12 C -0.205 4.205 13 C 0.106 3.894 14 C -0.466 4.466 15 H 0.076 0.924 16 C 0.071 3.929 17 N -0.805 5.805 18 Si 0.912 3.088 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.267 1.267 22 C -0.140 4.140 23 C -0.090 4.090 24 C -0.144 4.144 25 C -0.079 4.079 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.400 0.600 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.280 0.720 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.955 10.498 -0.233 19.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.124 4.124 3 N -0.098 5.098 4 H 0.286 0.714 5 N -0.098 5.098 6 C -0.161 4.161 7 C 0.369 3.631 8 O -0.389 6.389 9 N -0.282 5.282 10 C -0.085 4.085 11 C -0.129 4.129 12 C -0.225 4.225 13 C 0.104 3.896 14 C -0.497 4.497 15 H 0.094 0.906 16 C -0.145 4.145 17 N -0.431 5.431 18 Si 0.737 3.263 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.192 1.192 22 C -0.160 4.160 23 C -0.110 4.110 24 C -0.154 4.154 25 C -0.137 4.137 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.087 0.913 29 H 0.234 0.766 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.138 0.862 34 H 0.120 0.880 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.434 10.292 -0.214 18.552 hybrid contribution 0.025 -0.050 -0.046 0.073 sum -15.409 10.242 -0.261 18.504 Atomic orbital electron populations 1.20307 0.86717 1.03768 1.03143 1.21170 0.95100 0.87012 1.09148 1.43141 1.03036 1.09241 1.54419 0.71387 1.73548 1.01450 1.15143 1.19706 1.22063 0.95261 0.89446 1.09284 1.16888 0.81507 0.86628 0.78087 1.90802 1.86150 1.12551 1.49434 1.42840 1.04415 1.09969 1.70934 1.17225 0.85281 0.98602 1.07389 1.20088 0.93370 0.99830 0.99641 1.20677 0.96768 1.00473 1.04544 1.17682 0.93355 0.90347 0.88246 1.19437 0.93818 0.91324 1.45118 0.90621 1.25870 0.97414 0.98504 0.92671 1.69795 1.25618 1.10874 1.36837 0.86313 0.81867 0.78296 0.79806 1.19045 1.20443 1.19171 1.21012 0.92686 1.00430 1.01887 1.20450 0.97936 0.94713 0.97911 1.20146 0.90700 0.96684 1.07850 1.20196 1.01298 0.89817 1.02399 0.90481 0.89586 0.91278 0.76567 0.89058 0.88475 0.90957 0.86196 0.87992 0.91459 0.92237 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.14 36.01 0.37 -0.11 16 2 C 0.00 0.01 7.23 -82.20 -0.59 -0.58 16 3 N -0.38 -3.88 6.83 33.50 0.23 -3.65 16 4 H 0.44 2.59 8.96 -190.44 -1.71 0.88 16 5 N -0.26 -3.68 11.93 33.42 0.40 -3.29 16 6 C 0.00 0.02 7.13 -82.77 -0.59 -0.57 16 7 C 0.58 11.72 7.53 -12.41 -0.09 11.62 16 8 O -0.52 -11.93 12.88 5.29 0.07 -11.86 16 9 N -0.64 -12.63 5.30 -10.64 -0.06 -12.68 16 10 C 0.01 0.17 6.26 -83.60 -0.52 -0.35 16 11 C -0.11 -2.49 9.90 -39.78 -0.39 -2.88 16 12 C -0.20 -5.07 9.74 -39.26 -0.38 -5.45 16 13 C 0.11 2.90 5.50 -106.79 -0.59 2.31 16 14 C -0.47 -12.61 9.02 -37.86 -0.34 -12.96 16 15 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 16 C 0.07 1.85 5.31 -17.34 -0.09 1.76 16 17 N -0.80 -21.81 10.96 55.55 0.61 -21.21 16 18 Si 0.91 19.31 29.56 -169.99 -5.03 14.29 16 19 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 22 C -0.14 -3.82 8.57 -39.26 -0.34 -4.16 16 23 C -0.09 -2.30 8.57 -39.78 -0.34 -2.64 16 24 C -0.14 -2.01 6.25 -104.40 -0.65 -2.66 16 25 C -0.08 -1.02 9.60 36.00 0.35 -0.68 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 0.47 7.98 -51.93 -0.41 0.06 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.40 6.75 8.55 -40.82 -0.35 6.40 16 30 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 31 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 32 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 33 H 0.12 3.38 6.46 -52.49 -0.34 3.04 16 34 H 0.10 2.59 6.50 -52.49 -0.34 2.25 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.58 8.00 -51.93 -0.42 0.17 16 37 H 0.09 1.35 6.72 -51.93 -0.35 1.00 16 LS Contribution 319.41 15.07 4.81 4.81 Total: -1.00 -32.53 319.41 -8.76 -41.29 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.58 Total: 9.65 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -4.22 Total: -17.35 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 1.18 Total: -40.83 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.07 Total: -11.86 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.53 -8.76 -41.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335666619.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.831 kcal (2) G-P(sol) polarization free energy of solvation -32.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds