Wall clock time and date at job start Tue Mar 31 2020 05:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38546 * 119.84188 * 2 1 4 4 C 1.38089 * 120.39988 * 180.02562 * 3 2 1 5 5 C 1.38728 * 120.08635 * 359.97223 * 4 3 2 6 6 N 1.39727 * 120.15680 * 180.02562 * 5 4 3 7 7 C 1.37164 * 126.49158 * 303.23531 * 6 5 4 8 8 C 1.34620 * 106.83452 * 179.97438 * 7 6 5 9 9 N 1.34156 * 108.21614 * 0.02562 * 8 7 6 10 10 C 1.30487 * 109.37179 * 359.74509 * 9 8 7 11 11 C 1.40257 * 119.68298 * 359.97438 * 5 4 3 12 12 C 1.47472 * 120.19430 * 179.71907 * 11 5 4 13 13 O 1.21613 * 120.00665 * 300.13941 * 12 11 5 14 14 N 1.34779 * 119.99417 * 120.13628 * 12 11 5 15 15 C 1.46501 * 120.00351 * 4.03315 * 14 12 11 16 16 C 1.36887 * 119.99790 * 184.03355 * 14 12 11 17 17 H 1.08001 * 120.00105 * 6.23430 * 16 14 12 18 18 C 1.39041 * 120.00148 * 186.23966 * 16 14 12 19 19 N 1.31375 * 119.99754 * 6.26158 * 18 16 14 20 20 Si 1.86797 * 120.00170 * 186.26861 * 18 16 14 21 21 H 1.48493 * 109.47240 * 59.99400 * 20 18 16 22 22 H 1.48500 * 109.47185 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.46932 * 299.99467 * 20 18 16 24 24 C 1.37819 * 119.84726 * 179.97438 * 2 1 3 25 25 H 1.08988 * 109.47175 * 90.00498 * 1 2 3 26 26 H 1.09001 * 109.46762 * 210.00542 * 1 2 3 27 27 H 1.08996 * 109.47050 * 330.00045 * 1 2 3 28 28 H 1.08004 * 119.79915 * 359.97438 * 3 2 1 29 29 H 1.08002 * 119.95783 * 179.97438 * 4 3 2 30 30 H 1.08001 * 126.58517 * 359.97438 * 7 6 5 31 31 H 1.07998 * 125.89803 * 179.97438 * 8 7 6 32 32 H 1.08000 * 125.72586 * 180.28432 * 10 9 8 33 33 H 1.09001 * 109.46806 * 354.68138 * 15 14 12 34 34 H 1.08998 * 109.46919 * 114.67130 * 15 14 12 35 35 H 1.08997 * 109.47125 * 234.67259 * 15 14 12 36 36 H 0.96995 * 120.00180 * 179.97438 * 19 18 16 37 37 H 1.08001 * 120.04065 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2017 0.0000 4 6 3.5773 1.2152 -0.0005 5 6 4.2844 0.0217 -0.0005 6 7 5.6816 0.0335 -0.0005 7 6 6.4921 0.6448 -0.9229 8 6 7.7619 0.4079 -0.5438 9 7 7.7345 -0.3276 0.5779 10 6 6.4949 -0.5543 0.9166 11 6 3.5900 -1.1970 0.0006 12 6 4.3303 -2.4724 -0.0056 13 8 5.0884 -2.7312 -0.9206 14 7 4.1668 -3.3513 1.0031 15 6 3.1888 -3.0802 2.0596 16 6 4.9146 -4.4972 1.0403 17 1 5.7045 -4.6503 0.3199 18 6 4.6572 -5.4643 2.0056 19 7 3.6207 -5.3371 2.8028 20 14 5.7852 -6.9443 2.1691 21 1 7.1627 -6.4848 2.4799 22 1 5.2971 -7.8201 3.2644 23 1 5.7929 -7.7041 0.8932 24 6 2.1929 -1.1954 0.0005 25 1 -0.3633 -0.0001 -1.0275 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6506 2.1337 -0.0004 29 1 4.1074 2.1561 -0.0009 30 1 6.1730 1.2081 -1.7873 31 1 8.6497 0.7501 -1.0548 32 1 6.1696 -1.1161 1.7796 33 1 2.7621 -2.0878 1.9138 34 1 2.3951 -3.8262 2.0200 35 1 3.6814 -3.1250 3.0309 36 1 3.4409 -6.0119 3.4759 37 1 1.6511 -2.1296 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336030721.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:56 Heat of formation + Delta-G solvation = 77.304986 kcal Electronic energy + Delta-G solvation = -22568.535368 eV Core-core repulsion = 19312.958789 eV Total energy + Delta-G solvation = -3255.576578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.81606 -39.55781 -37.82748 -34.91886 -34.16895 -32.01755 -30.97831 -30.77048 -29.01050 -26.48279 -26.36138 -24.97874 -23.06751 -22.36987 -20.81088 -20.55757 -19.21720 -17.90046 -17.06539 -16.39809 -15.80517 -15.05578 -14.70727 -14.33267 -14.19095 -13.99751 -13.83063 -13.68388 -13.51210 -13.41987 -12.88838 -12.78351 -12.29779 -12.04096 -11.93894 -11.69956 -11.47264 -11.14582 -11.03225 -10.91428 -10.46427 -10.31763 -9.80294 -9.56840 -9.15945 -8.84091 -8.51093 -8.34486 -8.03984 -7.98692 -6.37650 -3.91978 1.06507 1.29446 2.49760 3.12530 3.15481 3.19774 3.24842 3.49100 3.61104 3.89511 4.03831 4.61025 4.80030 4.87929 5.07810 5.09947 5.17786 5.23417 5.26325 5.46113 5.56444 5.64419 5.70402 5.79504 5.96094 6.00144 6.03091 6.20120 6.29509 6.34901 6.54885 6.69321 6.83935 6.93700 7.14824 7.27218 7.45444 7.70643 7.92528 8.35294 8.47773 9.05564 9.27876 9.82447 10.55834 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.007128 C = 0.005086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.993181 B = 3927.176231 C = 5503.815829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.110 4.110 4 C -0.112 4.112 5 C 0.130 3.870 6 N -0.405 5.405 7 C -0.048 4.048 8 C -0.032 4.032 9 N -0.493 5.493 10 C 0.217 3.783 11 C -0.069 4.069 12 C 0.458 3.542 13 O -0.579 6.579 14 N -0.427 5.427 15 C 0.104 3.896 16 C -0.298 4.298 17 H 0.106 0.894 18 C 0.030 3.970 19 N -0.881 5.881 20 Si 0.933 3.067 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.084 4.084 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.169 0.831 31 H 0.167 0.833 32 H 0.200 0.800 33 H 0.028 0.972 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.269 0.731 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.434 12.281 -1.716 13.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.129 4.129 4 C -0.131 4.131 5 C 0.038 3.962 6 N -0.084 5.084 7 C -0.179 4.179 8 C -0.178 4.178 9 N -0.210 5.210 10 C -0.064 4.064 11 C -0.073 4.073 12 C 0.246 3.754 13 O -0.464 6.464 14 N -0.143 5.143 15 C -0.039 4.039 16 C -0.426 4.426 17 H 0.124 0.876 18 C -0.173 4.173 19 N -0.521 5.521 20 Si 0.760 3.240 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.103 4.103 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.186 0.814 31 H 0.184 0.816 32 H 0.216 0.784 33 H 0.047 0.953 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.540 11.707 -1.541 13.043 hybrid contribution -0.346 -0.565 -0.256 0.710 sum -5.886 11.143 -1.798 12.729 Atomic orbital electron populations 1.20798 0.90666 1.03061 1.02460 1.19926 0.96426 0.92722 0.99351 1.20880 0.93018 0.97733 1.01249 1.20942 0.94396 0.96256 1.01512 1.17577 0.80857 0.93198 1.04616 1.42798 1.04081 1.40491 1.21079 1.22624 0.91065 1.06297 0.97939 1.22169 0.95898 1.03129 0.96646 1.70246 1.19251 1.16712 1.14780 1.25182 0.84792 1.00000 0.96455 1.20379 0.94099 0.93925 0.98945 1.17558 0.87770 0.84622 0.85432 1.90679 1.41594 1.77742 1.36400 1.43669 1.33384 1.17606 1.19683 1.21979 0.93422 0.97226 0.91246 1.19803 1.13494 0.94076 1.15234 0.87620 1.25366 0.96870 0.99293 0.95745 1.70099 1.25930 1.35501 1.20556 0.85867 0.80020 0.80061 0.78102 1.19550 1.20751 1.19696 1.21183 0.92098 0.98417 0.98595 0.91036 0.91085 0.91426 0.85311 0.85286 0.81363 0.81570 0.78385 0.95314 0.90101 0.91838 0.92010 0.84712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.00 36.01 0.36 -0.70 16 2 C -0.08 -1.07 5.87 -104.66 -0.61 -1.69 16 3 C -0.11 -1.30 9.68 -39.52 -0.38 -1.68 16 4 C -0.11 -1.53 9.79 -39.46 -0.39 -1.92 16 5 C 0.13 2.31 5.92 -83.32 -0.49 1.82 16 6 N -0.41 -7.69 2.45 -61.84 -0.15 -7.84 16 7 C -0.05 -0.82 11.38 -16.45 -0.19 -1.01 16 8 C -0.03 -0.56 11.85 -17.82 -0.21 -0.77 16 9 N -0.49 -10.29 11.24 -14.46 -0.16 -10.45 16 10 C 0.22 4.50 11.17 -89.56 -1.00 3.50 16 11 C -0.07 -1.35 4.64 -104.83 -0.49 -1.84 16 12 C 0.46 11.29 5.55 -12.50 -0.07 11.22 16 13 O -0.58 -16.60 16.48 5.27 0.09 -16.51 16 14 N -0.43 -10.76 3.02 -123.41 -0.37 -11.13 16 15 C 0.10 2.30 8.26 59.85 0.49 2.79 16 16 C -0.30 -8.21 9.54 -15.00 -0.14 -8.35 16 17 H 0.11 3.11 7.20 -52.49 -0.38 2.73 16 18 C 0.03 0.78 5.41 -17.45 -0.09 0.68 16 19 N -0.88 -22.34 9.57 55.50 0.53 -21.81 16 20 Si 0.93 20.65 29.56 -169.99 -5.02 15.62 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 24 C -0.08 -1.36 7.24 -39.19 -0.28 -1.65 16 25 H 0.07 0.60 8.14 -51.94 -0.42 0.18 16 26 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 27 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 28 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 29 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.17 2.27 8.06 -52.49 -0.42 1.84 16 31 H 0.17 2.36 8.06 -52.49 -0.42 1.94 16 32 H 0.20 4.07 8.06 -52.49 -0.42 3.65 16 33 H 0.03 0.54 4.88 -51.93 -0.25 0.29 16 34 H 0.08 1.86 6.83 -51.93 -0.35 1.51 16 35 H 0.06 1.47 7.31 -51.93 -0.38 1.09 16 36 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 37 H 0.14 2.18 7.81 -52.49 -0.41 1.77 16 LS Contribution 316.87 15.07 4.78 4.78 Total: -1.00 -32.50 316.87 -8.10 -40.61 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -4.29 Total: 6.32 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -3.50 Total: 0.41 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -0.16 Total: -51.23 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.09 Total: -16.51 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.50 -8.10 -40.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336030721.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.912 kcal (2) G-P(sol) polarization free energy of solvation -32.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds