Wall clock time and date at job start Tue Mar 31 2020 05:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35461 * 125.56258 * 2 1 4 4 C 1.39824 * 107.86589 * 180.02562 * 3 2 1 5 5 C 1.37903 * 107.08608 * 359.97438 * 4 3 2 6 6 C 1.46624 * 126.23710 * 180.02562 * 5 4 3 7 7 O 1.21696 * 119.99835 * 7.40005 * 6 5 4 8 8 N 1.34778 * 120.00137 * 187.40216 * 6 5 4 9 9 C 1.39354 * 119.99843 * 181.83694 * 8 6 5 10 10 C 1.38674 * 119.65482 * 340.85796 * 9 8 6 11 11 C 1.40818 * 118.67121 * 179.78122 * 10 9 8 12 12 C 1.41540 * 120.99415 * 180.24251 * 11 10 9 13 13 H 1.08003 * 120.00497 * 204.54299 * 12 11 10 14 14 C 1.40036 * 119.99999 * 24.54793 * 12 11 10 15 15 N 1.30739 * 120.00429 * 12.76324 * 14 12 11 16 16 Si 1.86804 * 119.99598 * 192.76584 * 14 12 11 17 17 H 1.48497 * 109.47218 * 89.99869 * 16 14 12 18 18 H 1.48510 * 109.46773 * 209.99552 * 16 14 12 19 19 H 1.48498 * 109.47393 * 329.99487 * 16 14 12 20 20 C 1.41163 * 118.00727 * 0.48386 * 11 10 9 21 21 C 1.36595 * 119.13467 * 359.75800 * 20 11 10 22 22 N 1.32063 * 121.25860 * 359.97438 * 21 20 11 23 23 N 1.35541 * 125.55883 * 180.02562 * 2 1 3 24 24 C 1.46500 * 125.67968 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.46922 * 89.97871 * 1 2 3 26 26 H 1.08996 * 109.47243 * 209.98193 * 1 2 3 27 27 H 1.08999 * 109.46961 * 329.98148 * 1 2 3 28 28 H 1.07992 * 126.06473 * 359.74589 * 3 2 1 29 29 H 1.07998 * 126.45862 * 179.97438 * 4 3 2 30 30 H 0.96998 * 119.99979 * 1.83837 * 8 6 5 31 31 H 1.08000 * 120.66248 * 0.02562 * 10 9 8 32 32 H 0.96998 * 120.00195 * 180.02562 * 15 14 12 33 33 H 1.08006 * 120.43325 * 179.77934 * 20 11 10 34 34 H 1.08003 * 119.36761 * 180.02562 * 21 20 11 35 35 H 1.08998 * 109.47088 * 97.52123 * 24 23 2 36 36 H 1.08998 * 109.47017 * 217.52343 * 24 23 2 37 37 H 1.09004 * 109.47216 * 337.51902 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2949 1.1020 0.0000 4 6 3.6270 0.6769 -0.0006 5 6 3.6123 -0.7020 -0.0004 6 6 4.7856 -1.5813 -0.0003 7 8 5.8993 -1.1098 0.1353 8 7 4.6308 -2.9117 -0.1504 9 6 5.7424 -3.7513 -0.1120 10 6 7.0080 -3.2239 -0.3194 11 6 8.1172 -4.0902 -0.2714 12 6 9.4312 -3.6036 -0.4709 13 1 10.2059 -4.2689 -0.8228 14 6 9.7270 -2.2595 -0.2121 15 7 8.8735 -1.5166 0.4428 16 14 11.3413 -1.5280 -0.8025 17 1 11.1616 -0.9681 -2.1661 18 1 11.7636 -0.4475 0.1246 19 1 12.3819 -2.5869 -0.8354 20 6 7.8787 -5.4592 -0.0235 21 6 6.5952 -5.8875 0.1637 22 7 5.5784 -5.0461 0.1173 23 7 2.2953 -1.1027 -0.0005 24 6 1.8241 -2.4898 -0.0006 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3633 -0.8901 0.5135 27 1 -0.3633 0.8898 0.5141 28 1 1.9545 2.1268 -0.0039 29 1 4.5024 1.3093 -0.0011 30 1 3.7456 -3.2848 -0.2852 31 1 7.1408 -2.1691 -0.5099 32 1 9.0782 -0.5856 0.6217 33 1 8.7004 -6.1590 0.0180 34 1 6.4084 -6.9341 0.3540 35 1 1.8343 -2.8769 -1.0195 36 1 2.4792 -3.0961 0.6250 37 1 0.8083 -2.5285 0.3927 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336078956.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:25 Heat of formation + Delta-G solvation = 62.705963 kcal Electronic energy + Delta-G solvation = -21932.963108 eV Core-core repulsion = 18676.753469 eV Total energy + Delta-G solvation = -3256.209639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.41478 -39.35123 -37.54380 -34.60413 -33.78717 -32.60893 -31.76671 -30.45649 -28.76676 -26.71762 -26.40087 -25.78982 -22.75578 -21.71867 -20.44394 -20.15558 -19.26003 -17.85835 -17.21267 -15.89496 -15.71953 -15.23842 -15.17789 -14.48481 -14.23240 -14.17524 -13.65352 -13.37416 -13.34668 -13.04063 -12.83401 -12.56119 -12.41869 -12.35976 -12.04363 -11.89895 -11.74590 -11.34504 -11.15658 -10.92049 -10.40625 -10.13123 -9.67710 -9.29053 -8.73349 -8.66392 -8.07120 -7.93803 -7.85824 -7.03054 -6.58375 -4.47093 1.65092 2.70160 2.76142 2.89082 2.97749 3.11485 3.14572 3.29545 3.59094 3.88761 3.96804 4.56819 4.66878 4.78309 4.91806 4.96556 5.08329 5.31004 5.37719 5.53945 5.65048 5.69334 5.74625 5.93329 6.23031 6.31713 6.54665 6.77923 6.84584 6.94134 7.08088 7.10767 7.24008 7.27183 7.47324 7.64929 7.91224 8.00022 8.38453 8.57342 8.82317 8.86514 8.98303 9.58793 10.24096 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.019750 B = 0.005033 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.412926 B = 5562.404380 C = 6900.546100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.034 3.966 3 C -0.209 4.209 4 C -0.110 4.110 5 C -0.042 4.042 6 C 0.568 3.432 7 O -0.465 6.465 8 N -0.659 5.659 9 C 0.314 3.686 10 C -0.224 4.224 11 C 0.132 3.868 12 C -0.452 4.452 13 H 0.080 0.920 14 C 0.071 3.929 15 N -0.751 5.751 16 Si 0.910 3.090 17 H -0.268 1.268 18 H -0.277 1.277 19 H -0.263 1.263 20 C -0.290 4.290 21 C 0.121 3.879 22 N -0.610 5.610 23 N -0.429 5.429 24 C 0.050 3.950 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.140 0.860 29 H 0.149 0.851 30 H 0.394 0.606 31 H 0.178 0.822 32 H 0.285 0.715 33 H 0.100 0.900 34 H 0.121 0.879 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.293 3.743 -1.260 14.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.233 4.233 4 C -0.136 4.136 5 C -0.154 4.154 6 C 0.354 3.646 7 O -0.337 6.337 8 N -0.308 5.308 9 C 0.093 3.907 10 C -0.248 4.248 11 C 0.124 3.876 12 C -0.483 4.483 13 H 0.099 0.901 14 C -0.152 4.152 15 N -0.374 5.374 16 Si 0.734 3.266 17 H -0.193 1.193 18 H -0.202 1.202 19 H -0.187 1.187 20 C -0.314 4.314 21 C -0.033 4.033 22 N -0.331 5.331 23 N -0.106 5.106 24 C -0.091 4.091 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.158 0.842 29 H 0.166 0.834 30 H 0.232 0.768 31 H 0.195 0.805 32 H 0.096 0.904 33 H 0.118 0.882 34 H 0.139 0.861 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.492 3.667 -0.911 14.976 hybrid contribution 1.064 0.258 -0.305 1.137 sum -13.428 3.926 -1.216 14.043 Atomic orbital electron populations 1.20363 0.88057 1.03199 1.02650 1.20468 0.93522 0.85952 1.08176 1.20599 0.92451 0.97570 1.12708 1.21269 0.97613 0.91706 1.03035 1.20633 0.82249 0.94716 1.17811 1.17104 0.87859 0.81172 0.78430 1.90949 1.22479 1.74282 1.45966 1.43518 1.09769 1.06154 1.71332 1.18139 0.85732 0.87837 0.98982 1.23088 0.88993 1.04788 1.07912 1.17823 0.93536 0.90298 0.85987 1.19592 0.95034 0.94516 1.39161 0.90149 1.26037 0.98796 0.97132 0.93201 1.69809 1.34116 1.08216 1.25288 0.86290 0.81675 0.79139 0.79493 1.19259 1.20164 1.18662 1.21587 0.96625 0.97450 1.15731 1.21175 0.88546 0.96426 0.97187 1.66552 1.36391 1.02652 1.27532 1.43962 1.05454 1.06001 1.55176 1.22357 1.02309 0.80371 1.04087 0.90908 0.91793 0.90033 0.84171 0.83369 0.76783 0.80545 0.90400 0.88201 0.86107 0.89900 0.88873 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 10.06 36.01 0.36 -0.28 16 2 C 0.03 0.41 6.87 -81.94 -0.56 -0.15 16 3 C -0.21 -2.73 10.71 -39.98 -0.43 -3.16 16 4 C -0.11 -1.78 10.66 -39.11 -0.42 -2.19 16 5 C -0.04 -0.74 6.88 -81.99 -0.56 -1.30 16 6 C 0.57 12.16 7.66 -12.88 -0.10 12.06 16 7 O -0.47 -11.78 13.40 5.19 0.07 -11.71 16 8 N -0.66 -13.83 5.12 -12.68 -0.06 -13.90 16 9 C 0.31 7.94 7.53 -154.75 -1.16 6.78 16 10 C -0.22 -6.24 7.57 -38.45 -0.29 -6.54 16 11 C 0.13 3.68 5.61 -106.55 -0.60 3.09 16 12 C -0.45 -12.32 9.13 -37.65 -0.34 -12.67 16 13 H 0.08 2.07 7.88 -52.48 -0.41 1.66 16 14 C 0.07 1.83 5.27 -17.34 -0.09 1.74 16 15 N -0.75 -20.48 10.61 55.55 0.59 -19.89 16 16 Si 0.91 19.19 29.58 -169.99 -5.03 14.17 16 17 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 18 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 19 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 20 C -0.29 -7.30 9.85 -39.07 -0.38 -7.68 16 21 C 0.12 2.84 11.10 -18.05 -0.20 2.63 16 22 N -0.61 -14.89 10.36 -12.77 -0.13 -15.02 16 23 N -0.43 -5.84 3.16 -115.62 -0.37 -6.21 16 24 C 0.05 0.52 9.31 59.85 0.56 1.08 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.41 6.90 -51.93 -0.36 0.05 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.15 2.36 8.06 -52.49 -0.42 1.94 16 30 H 0.39 6.80 4.70 -40.82 -0.19 6.61 16 31 H 0.18 5.17 3.18 -53.14 -0.17 5.00 16 32 H 0.28 7.19 8.29 -40.82 -0.34 6.85 16 33 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 34 H 0.12 2.38 8.06 -52.48 -0.42 1.96 16 35 H 0.08 0.75 8.02 -51.93 -0.42 0.34 16 36 H 0.09 1.09 6.17 -51.93 -0.32 0.77 16 37 H 0.09 0.66 6.76 -51.93 -0.35 0.31 16 LS Contribution 312.21 15.07 4.70 4.70 Total: -1.00 -33.07 312.21 -8.34 -41.41 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -3.89 Total: 13.04 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -4.23 Total: -6.60 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.03 Total: -55.02 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.07 Total: -11.71 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.07 -8.34 -41.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336078956.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.120 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds