Wall clock time and date at job start Tue Mar 31 2020 05:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.46842 * 2 1 4 4 C 1.37971 * 120.07982 * 262.02516 * 3 2 1 5 5 C 1.38332 * 120.14882 * 180.29853 * 4 3 2 6 6 C 1.38387 * 120.29573 * 359.72333 * 5 4 3 7 7 C 1.37932 * 120.14043 * 359.97438 * 6 5 4 8 8 C 1.39568 * 120.06733 * 81.76785 * 3 2 1 9 9 C 1.47815 * 120.15140 * 359.97438 * 8 3 2 10 10 O 1.21585 * 119.99548 * 354.09561 * 9 8 3 11 11 N 1.34776 * 120.00286 * 174.09823 * 9 8 3 12 12 C 1.40522 * 119.99753 * 179.97438 * 11 9 8 13 13 C 1.40665 * 126.08893 * 359.97438 * 12 11 9 14 14 N 1.30908 * 108.38900 * 179.77073 * 13 12 11 15 15 N 1.40071 * 108.41105 * 0.38416 * 14 13 12 16 16 C 1.37315 * 126.06737 * 179.88037 * 15 14 13 17 17 H 1.08000 * 119.99879 * 179.69142 * 16 15 14 18 18 C 1.38983 * 119.99902 * 359.40567 * 16 15 14 19 19 N 1.31290 * 120.00292 * 0.28148 * 18 16 15 20 20 Si 1.86806 * 120.00099 * 180.28027 * 18 16 15 21 21 H 1.48500 * 109.47066 * 59.99655 * 20 18 16 22 22 H 1.48496 * 109.47455 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46809 * 300.00103 * 20 18 16 24 24 C 1.35704 * 126.08558 * 179.97438 * 12 11 9 25 25 H 1.08998 * 109.46803 * 299.99318 * 1 2 3 26 26 H 1.08991 * 109.47373 * 59.99735 * 1 2 3 27 27 H 1.09006 * 109.46834 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46803 * 240.00682 * 2 1 3 29 29 H 1.08991 * 109.47373 * 120.00265 * 2 1 3 30 30 H 1.07999 * 119.92634 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.85903 * 179.74660 * 5 4 3 32 32 H 1.07995 * 119.92938 * 180.02562 * 6 5 4 33 33 H 1.08006 * 120.07265 * 179.97438 * 7 6 5 34 34 H 0.96997 * 120.00351 * 0.02562 * 11 9 8 35 35 H 1.07994 * 125.80652 * 359.97438 * 13 12 11 36 36 H 0.97003 * 120.00136 * 179.97438 * 19 18 16 37 37 H 1.08005 * 126.24158 * 0.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4190 2.0176 -1.1824 5 6 2.8861 3.3197 -1.1831 6 6 2.9635 4.0343 -0.0006 7 6 2.5743 3.4517 1.1875 8 6 2.1023 2.1378 1.1954 9 6 1.6839 1.5070 2.4651 10 8 1.1778 0.4015 2.4567 11 7 1.8633 2.1572 3.6319 12 6 1.4650 1.5577 4.8387 13 6 0.8690 0.2911 4.9776 14 7 0.6464 0.0767 6.2497 15 7 1.0815 1.1965 6.9698 16 6 1.0169 1.3567 8.3321 17 1 1.3875 2.2632 8.7873 18 6 0.4691 0.3548 9.1244 19 7 0.0185 -0.7472 8.5710 20 14 0.3741 0.5760 10.9769 21 1 -0.4484 1.7719 11.2910 22 1 -0.2466 -0.6267 11.5879 23 1 1.7424 0.7587 11.5244 24 6 1.5869 2.0975 6.0778 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.3610 1.4655 -2.1087 31 1 3.1913 3.7809 -2.1108 32 1 3.3287 5.0506 -0.0081 33 1 2.6356 4.0103 2.1098 34 1 2.2667 3.0393 3.6385 35 1 0.6376 -0.3900 4.1721 36 1 -0.3635 -1.4466 9.1240 37 1 2.0065 3.0641 6.3147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770273759.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:50 Heat of formation + Delta-G solvation = 73.161471 kcal Electronic energy + Delta-G solvation = -21491.730480 eV Core-core repulsion = 18235.974225 eV Total energy + Delta-G solvation = -3255.756254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.36523 -39.37663 -37.81272 -34.73777 -33.57610 -33.04891 -31.24195 -30.16561 -29.38535 -27.65322 -25.07324 -23.94643 -23.32280 -21.35634 -20.97623 -20.05555 -19.36063 -17.68664 -17.12564 -15.78099 -15.63880 -15.44903 -14.95909 -14.78777 -14.60336 -14.01671 -13.69218 -13.60416 -13.24634 -12.96431 -12.86070 -12.72857 -12.14637 -11.70638 -11.61692 -11.53718 -11.42179 -11.24798 -10.98113 -10.77971 -10.69692 -10.55276 -10.03458 -9.14769 -9.01492 -8.98196 -8.79306 -8.72809 -8.04662 -6.67188 -6.54944 -4.21659 0.91021 1.30125 2.92051 3.05124 3.09249 3.09555 3.60330 3.61636 3.89255 3.95554 4.48924 4.69600 4.73413 4.79052 4.86917 5.03002 5.09896 5.25265 5.43918 5.49645 5.65529 5.71412 5.81162 6.00796 6.11340 6.24383 6.27092 6.32433 6.35764 6.48230 6.57899 6.70980 6.85235 6.93504 6.98217 7.16113 7.26373 7.86587 8.19773 8.29637 8.64788 8.87977 9.38591 9.68111 10.40954 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.035777 B = 0.003532 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.428301 B = 7926.488990 C = 8626.380928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.091 4.091 3 C -0.022 4.022 4 C -0.131 4.131 5 C -0.100 4.100 6 C -0.136 4.136 7 C -0.089 4.089 8 C -0.122 4.122 9 C 0.537 3.463 10 O -0.523 6.523 11 N -0.618 5.618 12 C -0.059 4.059 13 C -0.031 4.031 14 N -0.261 5.261 15 N -0.142 5.142 16 C -0.324 4.324 17 H 0.116 0.884 18 C 0.047 3.953 19 N -0.770 5.770 20 Si 0.935 3.065 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.085 4.085 25 H 0.068 0.932 26 H 0.039 0.961 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.395 0.605 35 H 0.177 0.823 36 H 0.275 0.725 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.935 7.969 -14.588 17.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.128 4.128 3 C -0.023 4.023 4 C -0.149 4.149 5 C -0.119 4.119 6 C -0.154 4.154 7 C -0.108 4.108 8 C -0.125 4.125 9 C 0.325 3.675 10 O -0.401 6.401 11 N -0.260 5.260 12 C -0.165 4.165 13 C -0.206 4.206 14 N -0.092 5.092 15 N 0.091 4.909 16 C -0.456 4.456 17 H 0.133 0.867 18 C -0.171 4.171 19 N -0.396 5.396 20 Si 0.758 3.242 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.192 1.192 24 C -0.236 4.236 25 H 0.087 0.913 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.121 0.879 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.229 0.771 35 H 0.194 0.806 36 H 0.086 0.914 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.992 6.125 -13.635 15.472 hybrid contribution 0.616 1.438 0.174 1.574 sum 4.608 7.563 -13.461 16.113 Atomic orbital electron populations 1.21604 0.94259 1.01683 1.01542 1.20772 0.96987 0.91676 1.03333 1.20085 0.94248 0.96512 0.91428 1.21034 1.00883 0.95432 0.97506 1.21274 0.98027 0.94452 0.98109 1.21034 1.01679 1.00186 0.92463 1.21336 0.96866 0.94014 0.98534 1.19927 1.03858 0.94863 0.93837 1.18040 0.80758 0.85792 0.82944 1.90619 1.43879 1.19453 1.86173 1.42447 1.59573 1.19470 1.04502 1.17261 1.17455 0.97822 0.83944 1.24130 1.04787 0.96168 0.95562 1.78255 1.23117 1.06124 1.01684 1.44533 1.32459 1.08830 1.05126 1.19824 1.42754 1.05506 0.77518 0.86687 1.25633 0.95369 0.94748 1.01320 1.70205 1.28498 1.04474 1.36442 0.85900 0.79226 0.78553 0.80491 1.19169 1.20132 1.19166 1.21256 1.14872 0.98728 0.88711 0.91338 0.94143 0.92694 0.92418 0.87910 0.85696 0.85944 0.85734 0.85689 0.77126 0.80598 0.91411 0.83763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 9.42 37.16 0.35 -1.51 16 2 C -0.09 -1.25 5.32 -27.88 -0.15 -1.39 16 3 C -0.02 -0.29 5.17 -104.22 -0.54 -0.83 16 4 C -0.13 -1.41 9.66 -39.64 -0.38 -1.79 16 5 C -0.10 -0.95 10.04 -39.49 -0.40 -1.35 16 6 C -0.14 -1.32 10.03 -39.64 -0.40 -1.72 16 7 C -0.09 -1.03 9.53 -39.18 -0.37 -1.40 16 8 C -0.12 -1.76 5.87 -104.97 -0.62 -2.38 16 9 C 0.54 9.69 7.61 -12.34 -0.09 9.60 16 10 O -0.52 -10.75 8.73 5.29 0.05 -10.70 16 11 N -0.62 -11.27 5.41 -10.86 -0.06 -11.32 16 12 C -0.06 -1.37 6.90 -83.86 -0.58 -1.95 16 13 C -0.03 -0.81 10.85 -17.03 -0.18 -1.00 16 14 N -0.26 -7.60 10.40 30.80 0.32 -7.28 16 15 N -0.14 -3.91 3.74 -11.41 -0.04 -3.96 16 16 C -0.32 -8.60 10.25 -14.82 -0.15 -8.75 16 17 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 18 C 0.05 1.20 5.50 -17.51 -0.10 1.11 16 19 N -0.77 -21.57 11.81 55.49 0.66 -20.92 16 20 Si 0.93 18.95 29.55 -169.99 -5.02 13.93 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 22 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 24 C -0.08 -2.00 11.49 -16.38 -0.19 -2.19 16 25 H 0.07 1.13 6.56 -51.93 -0.34 0.79 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.66 8.03 -51.93 -0.42 0.24 16 29 H 0.10 1.68 5.97 -51.93 -0.31 1.37 16 30 H 0.13 1.08 8.05 -52.49 -0.42 0.66 16 31 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 32 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.13 1.21 6.45 -52.48 -0.34 0.87 16 34 H 0.39 5.68 6.89 -40.82 -0.28 5.39 16 35 H 0.18 4.55 5.91 -52.49 -0.31 4.24 16 36 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.14 2.84 8.06 -52.48 -0.42 2.42 16 LS Contribution 313.05 15.07 4.72 4.72 Total: -1.00 -32.45 313.05 -7.26 -39.71 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -4.08 Total: 11.40 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -3.80 Total: -15.57 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.87 Total: -43.48 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.05 Total: -10.70 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.45 -7.26 -39.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770273759.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.871 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds