Wall clock time and date at job start Tue Mar 31 2020 05:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46886 * 2 1 4 4 C 1.52999 * 109.47463 * 240.00119 * 2 1 3 5 5 N 1.46499 * 109.47183 * 119.99834 * 2 1 3 6 6 N 1.40443 * 126.82874 * 234.18590 * 5 2 1 7 7 C 1.30706 * 106.79590 * 180.25979 * 6 5 2 8 8 N 1.33245 * 108.94653 * 359.74771 * 7 6 5 9 9 C 1.30827 * 109.82679 * 0.02562 * 8 7 6 10 10 C 1.50708 * 125.95765 * 179.97438 * 9 8 7 11 11 S 1.81402 * 109.46861 * 83.36427 * 10 9 8 12 12 O 1.42093 * 109.46859 * 296.38785 * 11 10 9 13 13 C 1.81396 * 102.99816 * 179.97438 * 11 10 9 14 14 C 1.53002 * 109.47077 * 179.97438 * 13 11 10 15 15 C 1.50704 * 109.47289 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99731 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00110 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99931 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 120.00022 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47034 * 89.99780 * 19 17 15 21 21 H 1.48501 * 109.47119 * 210.00216 * 19 17 15 22 22 H 1.48497 * 109.46848 * 329.99827 * 19 17 15 23 23 H 1.08996 * 109.47741 * 299.99765 * 1 2 3 24 24 H 1.08998 * 109.47174 * 60.00075 * 1 2 3 25 25 H 1.08999 * 109.47200 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46889 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47153 * 299.99938 * 3 2 1 28 28 H 1.09001 * 109.47266 * 60.00110 * 3 2 1 29 29 H 1.09004 * 109.46907 * 306.88871 * 4 2 1 30 30 H 1.08997 * 109.47203 * 66.88187 * 4 2 1 31 31 H 1.08999 * 109.47551 * 186.89112 * 4 2 1 32 32 H 1.07998 * 125.52720 * 179.71865 * 7 6 5 33 33 H 1.08996 * 109.47175 * 323.36577 * 10 9 8 34 34 H 1.09003 * 109.46910 * 203.36145 * 10 9 8 35 35 H 1.08999 * 109.46999 * 60.00324 * 13 11 10 36 36 H 1.08995 * 109.47646 * 300.00265 * 13 11 10 37 37 H 1.09003 * 109.47157 * 300.00443 * 14 13 11 38 38 H 1.08999 * 109.46726 * 60.00421 * 14 13 11 39 39 H 0.96998 * 119.99835 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 7 2.9191 -0.1883 2.1494 7 6 3.0858 -1.1273 3.0432 8 7 2.3408 -2.1802 2.7086 9 6 1.6911 -1.9300 1.6010 10 6 0.7454 -2.8698 0.8982 11 16 -0.8978 -2.7541 1.6579 12 8 -0.8266 -3.1888 3.0088 13 6 -1.8778 -3.9363 0.6924 14 6 -3.3143 -3.9577 1.2186 15 6 -4.1285 -4.9404 0.4169 16 1 -3.6673 -5.4945 -0.3872 17 6 -5.4620 -5.1319 0.7100 18 7 -6.1723 -5.9898 0.0107 19 14 -6.2599 -4.1729 2.1004 20 1 -6.8148 -2.9017 1.5702 21 1 -7.3546 -4.9812 2.6948 22 1 -5.2443 -3.8735 3.1416 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.5796 -1.7071 -1.3130 30 1 1.7808 -0.1412 -2.1349 31 1 3.1230 -0.8292 -1.1897 32 1 3.7241 -1.0609 3.9118 33 1 1.1156 -3.8911 0.9868 34 1 0.6787 -2.5975 -0.1552 35 1 -1.4423 -4.9311 0.7858 36 1 -1.8789 -3.6371 -0.3557 37 1 -3.3129 -4.2572 2.2667 38 1 -3.7502 -2.9630 1.1256 39 1 -7.1104 -6.1248 0.2171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118576715.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:58 Heat of formation + Delta-G solvation = 46.679181 kcal Electronic energy + Delta-G solvation = -20739.123857 eV Core-core repulsion = 17617.663195 eV Total energy + Delta-G solvation = -3121.460661 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.125 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.27373 -37.50349 -35.39721 -33.77693 -32.81943 -31.31927 -31.29942 -28.46389 -27.83535 -27.60106 -25.67026 -23.08036 -21.43758 -20.86131 -19.66031 -17.46649 -16.95230 -16.80086 -16.02490 -15.56445 -15.05819 -14.97244 -14.34426 -14.27682 -14.12156 -13.91895 -13.50977 -13.23158 -12.86230 -12.70201 -12.69275 -12.54885 -12.26054 -12.10659 -11.90090 -11.66409 -11.58092 -11.13119 -11.05576 -10.76857 -10.33716 -10.13918 -9.94190 -9.89674 -9.78439 -9.43657 -9.11177 -8.62940 -7.97745 -6.13203 -4.13255 1.22067 1.87431 2.13253 2.81107 3.01388 3.25412 3.34867 3.40412 3.83109 4.02471 4.09021 4.35977 4.38373 4.47119 4.61026 4.67397 5.10937 5.15688 5.19786 5.20962 5.28025 5.34159 5.40413 5.41936 5.49812 5.70797 5.74495 5.81134 5.84689 5.88438 6.26205 6.41573 6.48992 6.73534 6.96270 7.11768 7.62934 8.08782 8.42021 8.89366 9.47638 10.99632 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.026141 B = 0.004190 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.861688 B = 6681.756246 C = 7062.757352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.173 3.827 3 C -0.141 4.141 4 C -0.166 4.166 5 N -0.365 5.365 6 N -0.320 5.320 7 C 0.196 3.804 8 N -0.536 5.536 9 C 0.307 3.693 10 C -0.396 4.396 11 S 1.226 4.774 12 O -0.822 6.822 13 C -0.412 4.412 14 C 0.003 3.997 15 C -0.519 4.519 16 H 0.075 0.925 17 C 0.070 3.930 18 N -0.899 5.899 19 Si 0.871 3.129 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.263 1.263 23 H 0.076 0.924 24 H 0.094 0.906 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.215 0.785 33 H 0.120 0.880 34 H 0.136 0.864 35 H 0.084 0.916 36 H 0.114 0.886 37 H 0.024 0.976 38 H 0.023 0.977 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.957 16.368 -3.927 23.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.090 3.910 3 C -0.199 4.199 4 C -0.224 4.224 5 N -0.158 5.158 6 N -0.147 5.147 7 C -0.107 4.107 8 N -0.264 5.264 9 C 0.031 3.969 10 C -0.530 4.530 11 S 1.423 4.577 12 O -0.817 6.817 13 C -0.552 4.552 14 C -0.036 4.036 15 C -0.559 4.559 16 H 0.093 0.907 17 C -0.132 4.132 18 N -0.538 5.538 19 Si 0.698 3.302 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.187 1.187 23 H 0.095 0.905 24 H 0.112 0.888 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.232 0.768 33 H 0.139 0.861 34 H 0.154 0.846 35 H 0.103 0.897 36 H 0.132 0.868 37 H 0.042 0.958 38 H 0.041 0.959 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.899 17.304 -3.017 23.692 hybrid contribution 0.273 -1.890 0.665 2.022 sum 16.171 15.415 -2.352 22.465 Atomic orbital electron populations 1.22585 0.91935 1.04125 1.04943 1.20912 0.94951 0.93873 0.81280 1.21909 1.02448 0.92403 1.03144 1.22373 1.02330 1.01502 0.96205 1.50663 1.33621 1.11638 1.19871 1.77957 1.11611 1.23083 1.02048 1.25936 0.98561 0.87000 0.99212 1.70545 1.13212 1.29163 1.13511 1.23020 0.96249 0.85746 0.91911 1.26751 1.16196 1.02136 1.07898 1.70866 0.86067 1.14220 0.86593 1.93178 1.80982 1.81700 1.25795 1.27498 1.07281 1.10800 1.09589 1.19261 0.88896 0.98078 0.97322 1.20989 0.94357 1.22897 1.17610 0.90727 1.24994 0.97194 0.94928 0.96085 1.69891 1.08386 1.35143 1.40339 0.86893 0.79597 0.80424 0.83305 1.19754 1.21029 1.18724 0.90546 0.88772 0.91100 0.91351 0.90576 0.91258 0.91100 0.89545 0.91661 0.76827 0.86111 0.84609 0.89711 0.86781 0.95820 0.95866 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 8.32 37.16 0.31 -0.88 16 2 C 0.17 1.42 1.06 -131.82 -0.14 1.28 16 3 C -0.14 -1.00 8.05 37.16 0.30 -0.70 16 4 C -0.17 -1.09 8.50 37.16 0.32 -0.78 16 5 N -0.37 -4.39 3.47 -45.70 -0.16 -4.55 16 6 N -0.32 -4.22 11.82 29.29 0.35 -3.88 16 7 C 0.20 2.65 13.03 -91.82 -1.20 1.46 16 8 N -0.54 -8.79 11.19 -11.97 -0.13 -8.92 16 9 C 0.31 4.34 6.79 -155.69 -1.06 3.28 16 10 C -0.40 -4.89 5.41 36.01 0.19 -4.70 16 11 S 1.23 18.54 11.45 -107.50 -1.23 17.31 16 12 O -0.82 -17.96 18.14 -35.23 -0.64 -18.60 16 13 C -0.41 -7.26 5.86 37.16 0.22 -7.04 16 14 C 0.00 0.08 4.05 -27.88 -0.11 -0.04 16 15 C -0.52 -14.35 9.66 -34.44 -0.33 -14.68 16 16 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 19 Si 0.87 21.24 27.47 -169.99 -4.67 16.57 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 23 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.47 3.84 -51.93 -0.20 0.28 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.45 5.73 -51.93 -0.30 0.15 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.22 2.06 8.06 -52.49 -0.42 1.64 16 33 H 0.12 1.58 8.14 -51.93 -0.42 1.15 16 34 H 0.14 1.13 4.33 -51.92 -0.22 0.91 16 35 H 0.08 1.58 8.14 -51.92 -0.42 1.16 16 36 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 37 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 38 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 328.89 15.07 4.96 4.96 Total: -1.00 -38.70 328.89 -8.08 -46.78 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -5.72 Total: -2.43 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -1.60 Total: -20.88 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 0.83 Total: -43.69 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.64 Total: -18.60 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Atomic # 16 Polarization: 18.54 SS G_CDS: -1.23 Total: 17.31 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -38.70 -8.08 -46.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118576715.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.455 kcal (2) G-P(sol) polarization free energy of solvation -38.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds