Wall clock time and date at job start Tue Mar 31 2020 06:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46980 * 2 1 4 4 N 1.46905 * 109.46905 * 184.68966 * 3 2 1 5 5 C 1.46903 * 110.99872 * 300.16905 * 4 3 2 6 6 C 1.50699 * 109.46892 * 288.96916 * 5 4 3 7 7 H 1.08003 * 120.00451 * 4.83391 * 6 5 4 8 8 C 1.37876 * 120.00126 * 184.83955 * 6 5 4 9 9 N 1.31510 * 120.00315 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99674 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47438 * 90.00406 * 10 8 6 12 12 H 1.48504 * 109.47278 * 209.99866 * 10 8 6 13 13 H 1.48497 * 109.47621 * 329.99781 * 10 8 6 14 14 C 1.46900 * 110.99885 * 64.12155 * 4 3 2 15 15 C 1.50701 * 109.46923 * 76.33127 * 14 4 3 16 16 C 1.38247 * 119.94933 * 95.62273 * 15 14 4 17 17 C 1.38170 * 120.11093 * 180.29623 * 16 15 14 18 18 C 1.38704 * 120.01217 * 359.44390 * 17 16 15 19 19 O 1.35960 * 120.05249 * 180.29740 * 18 17 16 20 20 C 1.38838 * 119.90320 * 0.55397 * 18 17 16 21 21 F 1.35093 * 120.05602 * 179.74746 * 20 18 17 22 22 C 1.38452 * 119.94557 * 275.63684 * 15 14 4 23 23 F 1.35102 * 120.01221 * 359.96097 * 22 15 14 24 24 H 1.09006 * 109.47367 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47253 * 300.00052 * 1 2 3 26 26 H 1.08998 * 109.47243 * 60.00235 * 1 2 3 27 27 H 1.09004 * 109.47253 * 239.99948 * 2 1 3 28 28 H 1.08998 * 109.47243 * 119.99765 * 2 1 3 29 29 H 1.09000 * 109.47059 * 64.68847 * 3 2 1 30 30 H 1.08990 * 109.47012 * 304.68699 * 3 2 1 31 31 H 1.08993 * 109.47401 * 48.96638 * 5 4 3 32 32 H 1.08995 * 109.47133 * 168.97291 * 5 4 3 33 33 H 0.97002 * 120.00017 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.47157 * 316.32555 * 14 4 3 35 35 H 1.09000 * 109.46805 * 196.32589 * 14 4 3 36 36 H 1.07993 * 119.94851 * 0.02562 * 16 15 14 37 37 H 1.07999 * 119.99612 * 179.70150 * 17 16 15 38 38 H 0.96698 * 114.00121 * 270.25975 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5046 1.4441 -0.1132 5 6 4.1201 0.7233 1.0091 6 6 3.9649 1.5322 2.2711 7 1 3.3926 2.4481 2.2586 8 6 4.5537 1.1033 3.4417 9 7 4.4187 1.8094 4.5429 10 14 5.5432 -0.4810 3.4635 11 1 6.9636 -0.1818 3.1503 12 1 5.4534 -1.1022 4.8093 13 1 4.9993 -1.4184 2.4484 14 6 3.9337 0.8799 -1.3999 15 6 3.7144 1.8952 -2.4917 16 6 4.7543 2.7132 -2.8926 17 6 4.5553 3.6494 -3.8890 18 6 3.3138 3.7621 -4.4972 19 8 3.1187 4.6790 -5.4820 20 6 2.2690 2.9409 -4.0951 21 9 1.0571 3.0516 -4.6817 22 6 2.4716 2.0075 -3.0916 23 9 1.4568 1.2068 -2.6987 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7468 1.9315 0.9290 30 1 1.6097 1.9800 -0.8449 31 1 3.6297 -0.2420 1.1338 32 1 5.1795 0.5690 0.8046 33 1 4.8326 1.5074 5.3666 34 1 3.3526 -0.0168 -1.6154 35 1 4.9919 0.6236 -1.3494 36 1 5.7227 2.6233 -2.4231 37 1 5.3676 4.2908 -4.1974 38 1 2.8244 5.5429 -5.1624 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140893915.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:42 Heat of formation + Delta-G solvation = -99.904296 kcal Electronic energy + Delta-G solvation = -23152.143266 eV Core-core repulsion = 19438.193131 eV Total energy + Delta-G solvation = -3713.950136 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.48021 -48.55805 -39.71972 -37.94704 -36.55447 -32.79395 -32.36194 -30.58231 -30.44411 -27.68451 -26.17303 -24.02496 -23.02547 -22.12030 -21.76577 -19.32579 -18.99309 -17.72406 -17.11690 -16.81995 -16.77647 -16.24182 -15.32395 -15.02408 -14.87819 -14.79814 -14.47233 -14.09160 -14.00725 -13.87651 -13.47391 -13.08882 -12.55791 -12.48950 -12.02337 -11.77320 -11.73093 -11.41240 -11.18506 -11.07360 -10.97178 -10.87380 -10.63534 -10.40321 -9.95153 -9.84691 -9.33446 -8.82884 -8.72479 -8.57754 -7.39715 -6.07116 -4.04009 0.79977 0.85289 3.13993 3.25129 3.33625 3.34165 3.52270 4.03859 4.36362 4.39090 4.53021 4.65280 4.84326 4.98348 5.25948 5.38576 5.45288 5.47549 5.58514 5.66169 5.78550 5.86081 5.89749 5.96483 6.04269 6.22690 6.32272 6.33975 6.46354 6.52425 6.54799 6.80663 6.90712 7.00640 7.28678 7.54783 7.82471 7.95024 8.62229 9.02183 9.54261 11.06149 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.021368 B = 0.004927 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.031156 B = 5681.213134 C = 6432.111317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.160 4.160 3 C 0.058 3.942 4 N -0.517 5.517 5 C 0.158 3.842 6 C -0.505 4.505 7 H 0.080 0.920 8 C 0.069 3.931 9 N -0.900 5.900 10 Si 0.873 3.127 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.268 1.268 14 C 0.077 3.923 15 C -0.071 4.071 16 C -0.067 4.067 17 C -0.126 4.126 18 C 0.090 3.910 19 O -0.486 6.486 20 C 0.037 3.963 21 F -0.127 7.127 22 C 0.086 3.914 23 F -0.118 7.118 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.060 0.940 31 H -0.002 1.002 32 H 0.022 0.978 33 H 0.263 0.737 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.833 1.463 -17.149 17.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.199 4.199 3 C -0.070 4.070 4 N -0.240 5.240 5 C 0.033 3.967 6 C -0.543 4.543 7 H 0.098 0.902 8 C -0.132 4.132 9 N -0.539 5.539 10 Si 0.700 3.300 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.193 1.193 14 C -0.051 4.051 15 C -0.073 4.073 16 C -0.086 4.086 17 C -0.144 4.144 18 C 0.044 3.956 19 O -0.296 6.296 20 C 0.016 3.984 21 F -0.105 7.105 22 C 0.065 3.935 23 F -0.096 7.096 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.016 0.984 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -1.524 1.472 -17.289 17.418 hybrid contribution -0.325 -1.333 0.381 1.424 sum -1.850 0.140 -16.908 17.009 Atomic orbital electron populations 1.21634 0.96145 1.00753 1.01468 1.22130 0.96021 1.00036 1.01733 1.22251 0.87422 0.94907 1.02456 1.62272 1.07404 1.54202 1.00090 1.20290 0.93696 0.93196 0.89543 1.20976 1.33081 1.09469 0.90776 0.90216 1.24875 0.96172 0.96674 0.95524 1.69886 1.45096 1.38720 1.00212 0.86904 0.81051 0.84498 0.77532 1.20174 1.21236 1.19328 1.21143 1.01791 0.92997 0.89129 1.20024 0.90904 0.99186 0.97154 1.20941 0.99485 0.93106 0.95089 1.21374 0.96465 1.00365 0.96219 1.18119 0.91725 0.93807 0.91953 1.84859 1.89433 1.24378 1.30969 1.18035 0.82011 1.01326 0.97044 1.91498 1.41097 1.95340 1.82578 1.17397 0.86394 0.92923 0.96764 1.91526 1.57790 1.70984 1.89338 0.93587 0.92695 0.93185 0.92788 0.91069 0.89744 0.92158 0.98444 0.95951 0.92672 0.93156 0.89557 0.83526 0.83787 0.74969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.16 -2.78 4.71 -26.73 -0.13 -2.91 16 3 C 0.06 1.09 4.65 -3.82 -0.02 1.08 16 4 N -0.52 -10.24 4.58 -237.51 -1.09 -11.33 16 5 C 0.16 3.64 3.62 -4.97 -0.02 3.62 16 6 C -0.50 -13.86 9.21 -34.44 -0.32 -14.18 16 7 H 0.08 2.41 7.52 -52.48 -0.39 2.02 16 8 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 9 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 10 Si 0.87 20.90 27.37 -169.99 -4.65 16.24 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.17 6.68 56.52 0.38 -5.79 16 14 C 0.08 1.24 4.89 -4.98 -0.02 1.22 16 15 C -0.07 -1.01 5.27 -104.54 -0.55 -1.56 16 16 C -0.07 -0.80 9.67 -39.60 -0.38 -1.18 16 17 C -0.13 -1.31 9.98 -39.43 -0.39 -1.70 16 18 C 0.09 1.06 6.71 -39.19 -0.26 0.79 16 19 O -0.49 -4.93 13.37 -19.61 -0.26 -5.19 16 20 C 0.04 0.51 7.32 -39.25 -0.29 0.22 16 21 F -0.13 -1.85 17.03 2.25 0.04 -1.81 16 22 C 0.09 1.27 6.31 -39.39 -0.25 1.02 16 23 F -0.12 -1.86 13.19 2.25 0.03 -1.83 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.72 8.09 -51.93 -0.42 0.30 16 27 H 0.05 0.90 5.64 -51.93 -0.29 0.60 16 28 H 0.07 1.38 6.43 -51.93 -0.33 1.04 16 29 H 0.08 1.80 7.12 -51.93 -0.37 1.43 16 30 H 0.06 1.08 4.98 -51.93 -0.26 0.82 16 31 H 0.00 -0.05 5.27 -51.93 -0.27 -0.32 16 32 H 0.02 0.51 6.86 -51.93 -0.36 0.15 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.05 0.80 5.42 -51.93 -0.28 0.52 16 35 H 0.09 1.27 7.55 -51.93 -0.39 0.88 16 36 H 0.15 1.50 8.06 -52.49 -0.42 1.07 16 37 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.39 2.14 9.06 45.56 0.41 2.55 16 LS Contribution 312.75 15.07 4.71 4.71 Total: -1.00 -31.28 312.75 -6.62 -37.89 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -3.81 Total: 1.13 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -2.36 Total: -13.51 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: -0.31 Total: -37.64 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.26 Total: -5.19 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.07 Total: -3.64 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.65 Total: 16.24 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.28 -6.62 -37.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140893915.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.010 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds