Wall clock time and date at job start Tue Mar 31 2020 05:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39215 * 125.57731 * 2 1 4 4 C 1.38190 * 107.68834 * 179.74269 * 3 2 1 5 5 C 1.46932 * 126.50956 * 180.28685 * 4 3 2 6 6 O 1.21687 * 119.99831 * 174.93339 * 5 4 3 7 7 N 1.34770 * 119.99965 * 354.92929 * 5 4 3 8 8 C 1.46502 * 120.00063 * 5.80101 * 7 5 4 9 9 C 1.36828 * 119.99901 * 185.79719 * 7 5 4 10 10 H 1.08005 * 120.00349 * 332.20515 * 9 7 5 11 11 C 1.39061 * 119.99809 * 152.20080 * 9 7 5 12 12 N 1.31363 * 119.99855 * 37.21933 * 11 9 7 13 13 Si 1.86802 * 120.00049 * 217.21321 * 11 9 7 14 14 H 1.48500 * 109.46987 * 60.00184 * 13 11 9 15 15 H 1.48495 * 109.47071 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46932 * 300.00526 * 13 11 9 17 17 N 1.37006 * 106.98061 * 0.38220 * 4 3 2 18 18 C 1.40011 * 126.16824 * 179.88139 * 17 4 3 19 19 C 1.38885 * 120.06947 * 119.69957 * 18 17 4 20 20 C 1.38103 * 119.92642 * 179.97438 * 19 18 17 21 21 C 1.38294 * 120.07192 * 359.97438 * 20 19 18 22 22 C 1.38290 * 120.14317 * 0.02562 * 21 20 19 23 23 C 1.38101 * 120.07030 * 0.02562 * 22 21 20 24 24 N 1.31036 * 125.57582 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47133 * 269.99773 * 1 2 3 26 26 H 1.09002 * 109.47003 * 29.99906 * 1 2 3 27 27 H 1.09005 * 109.47146 * 149.99466 * 1 2 3 28 28 H 1.08000 * 126.15816 * 359.96384 * 3 2 1 29 29 H 1.08999 * 109.47351 * 53.48598 * 8 7 5 30 30 H 1.09000 * 109.47097 * 173.49164 * 8 7 5 31 31 H 1.08997 * 109.46848 * 293.48633 * 8 7 5 32 32 H 0.97004 * 119.99692 * 180.02562 * 12 11 9 33 33 H 1.07999 * 120.03593 * 0.25334 * 19 18 17 34 34 H 1.08001 * 119.96620 * 179.97438 * 20 19 18 35 35 H 1.08001 * 119.92794 * 179.97438 * 21 20 19 36 36 H 1.07994 * 119.95926 * 179.97438 * 22 21 20 37 37 H 1.08004 * 120.03518 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3169 1.1323 0.0000 4 6 3.6320 0.7078 0.0059 5 6 4.8266 1.5632 0.0140 6 8 5.9319 1.0636 0.1117 7 7 4.6983 2.9009 -0.0870 8 6 3.3668 3.5119 -0.0767 9 6 5.8115 3.6885 -0.1990 10 1 6.7498 3.3606 0.2236 11 6 5.7349 4.9112 -0.8571 12 7 4.6595 5.6559 -0.7361 13 14 7.1612 5.4947 -1.9129 14 1 7.4034 4.5153 -3.0026 15 1 6.8330 6.8184 -2.5003 16 1 8.3811 5.6142 -1.0746 17 7 3.6103 -0.6621 0.0007 18 6 4.7274 -1.5062 0.0015 19 6 4.9198 -2.4047 1.0429 20 6 6.0224 -3.2363 1.0405 21 6 6.9341 -3.1753 0.0025 22 6 6.7454 -2.2817 -1.0359 23 6 5.6454 -1.4467 -1.0390 24 7 2.2693 -1.0658 0.0005 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5139 28 1 1.9784 2.1579 -0.0006 29 1 2.8193 3.1754 0.8037 30 1 3.4652 4.5971 -0.0506 31 1 2.8251 3.2178 -0.9757 32 1 4.6059 6.5086 -1.1955 33 1 4.2056 -2.4562 1.8514 34 1 6.1728 -3.9350 1.8502 35 1 7.7957 -3.8264 0.0031 36 1 7.4594 -2.2363 -1.8449 37 1 5.4988 -0.7487 -1.8500 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147856489.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:27 Heat of formation + Delta-G solvation = 107.121375 kcal Electronic energy + Delta-G solvation = -22249.886439 eV Core-core repulsion = 18995.602796 eV Total energy + Delta-G solvation = -3254.283643 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.01905 -38.65916 -38.07413 -35.00812 -33.49278 -32.18046 -30.79166 -30.38435 -29.57038 -27.12527 -26.32486 -25.10781 -22.67287 -22.35275 -21.56887 -19.89043 -18.81902 -17.37278 -16.87634 -15.92531 -15.77430 -15.43365 -14.72300 -14.33772 -14.28810 -14.14133 -13.75142 -13.42536 -13.23887 -13.09784 -12.76157 -12.48564 -12.24663 -12.00083 -11.79851 -11.72219 -11.44183 -11.35409 -10.93690 -10.74293 -10.59401 -10.46298 -9.77219 -9.22654 -8.98055 -8.78992 -8.62410 -8.42969 -7.96803 -7.87687 -6.60231 -3.99641 1.26911 1.62228 1.95464 2.73184 2.95649 3.11026 3.17038 3.26079 3.92378 3.97102 4.14818 4.64763 4.86914 4.99276 5.10860 5.12997 5.26255 5.28539 5.58627 5.63211 5.71913 5.75027 5.85598 5.90184 6.07759 6.12680 6.21047 6.35397 6.41136 6.52647 6.59809 6.67460 6.68465 6.97794 7.05029 7.08313 7.59955 7.65685 7.96264 8.10324 8.44061 8.95146 9.19205 9.81029 10.26534 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.014606 B = 0.006347 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.572515 B = 4410.231985 C = 6015.985097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.063 3.937 3 C -0.266 4.266 4 C 0.085 3.915 5 C 0.484 3.516 6 O -0.579 6.579 7 N -0.409 5.409 8 C 0.015 3.985 9 C -0.320 4.320 10 H 0.107 0.893 11 C 0.056 3.944 12 N -0.836 5.836 13 Si 0.915 3.085 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.268 1.268 17 N -0.314 5.314 18 C 0.166 3.834 19 C -0.105 4.105 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.109 4.109 23 C -0.071 4.071 24 N -0.293 5.293 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.179 0.821 29 H 0.038 0.962 30 H 0.161 0.839 31 H 0.038 0.962 32 H 0.277 0.723 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.091 -9.039 -0.002 9.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 C -0.296 4.296 4 C -0.043 4.043 5 C 0.272 3.728 6 O -0.465 6.465 7 N -0.125 5.125 8 C -0.127 4.127 9 C -0.447 4.447 10 H 0.125 0.875 11 C -0.151 4.151 12 N -0.472 5.472 13 Si 0.739 3.261 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.193 1.193 17 N -0.093 5.093 18 C 0.076 3.924 19 C -0.125 4.125 20 C -0.136 4.136 21 C -0.136 4.136 22 C -0.128 4.128 23 C -0.091 4.091 24 N -0.115 5.115 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.195 0.805 29 H 0.056 0.944 30 H 0.177 0.823 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.535 -10.341 -0.007 10.928 hybrid contribution 0.388 1.253 -0.435 1.382 sum -3.147 -9.088 -0.442 9.627 Atomic orbital electron populations 1.20140 0.86659 1.03067 1.02713 1.22271 0.96864 0.91038 0.99991 1.22916 0.90429 1.01157 1.15053 1.21784 0.96649 0.83796 1.02041 1.16745 0.86249 0.82343 0.87422 1.90681 1.25967 1.73314 1.56584 1.43296 1.07102 1.03110 1.59040 1.23640 0.83558 1.08070 0.97459 1.19473 0.89689 1.00535 1.35053 0.87537 1.25427 0.98244 0.95373 0.96096 1.69279 1.30019 1.10508 1.37381 0.86196 0.81580 0.77299 0.81005 1.19557 1.20790 1.19332 1.45728 1.03606 1.02925 1.57023 1.17183 0.86237 0.93318 0.95697 1.21033 0.98303 0.96197 0.96967 1.20899 0.94340 0.99444 0.98944 1.21148 0.99072 0.98967 0.94389 1.20931 0.96911 0.95761 0.99148 1.21046 0.93889 0.97337 0.96865 1.77294 0.85503 1.22797 1.25932 0.90712 0.90372 0.91235 0.80465 0.94365 0.82265 0.94322 0.91108 0.85925 0.85659 0.85872 0.85492 0.85853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.43 36.00 0.38 -0.45 16 2 C 0.06 1.12 7.17 -82.57 -0.59 0.53 16 3 C -0.27 -5.20 8.71 -39.24 -0.34 -5.54 16 4 C 0.08 1.92 6.78 -82.05 -0.56 1.37 16 5 C 0.48 12.45 7.54 -12.74 -0.10 12.36 16 6 O -0.58 -16.10 14.14 5.20 0.07 -16.03 16 7 N -0.41 -10.52 3.02 -123.60 -0.37 -10.89 16 8 C 0.02 0.34 8.02 59.85 0.48 0.82 16 9 C -0.32 -8.65 9.08 -15.02 -0.14 -8.78 16 10 H 0.11 3.02 7.64 -52.48 -0.40 2.62 16 11 C 0.06 1.39 5.30 -17.45 -0.09 1.30 16 12 N -0.84 -20.30 10.22 55.50 0.57 -19.73 16 13 Si 0.91 19.61 29.68 -169.99 -5.05 14.57 16 14 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 15 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 16 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 17 N -0.31 -6.75 3.67 -7.08 -0.03 -6.77 16 18 C 0.17 3.34 5.33 -83.64 -0.45 2.89 16 19 C -0.11 -1.83 9.97 -39.39 -0.39 -2.22 16 20 C -0.12 -1.69 10.04 -39.61 -0.40 -2.08 16 21 C -0.12 -1.62 10.04 -39.54 -0.40 -2.02 16 22 C -0.11 -1.71 10.04 -39.61 -0.40 -2.10 16 23 C -0.07 -1.36 8.11 -39.39 -0.32 -1.68 16 24 N -0.29 -5.81 12.50 33.57 0.42 -5.39 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.18 3.17 4.08 -52.49 -0.21 2.95 16 29 H 0.04 0.77 6.22 -51.93 -0.32 0.45 16 30 H 0.16 3.77 4.37 -61.54 -0.27 3.50 16 31 H 0.04 0.80 6.77 -51.93 -0.35 0.45 16 32 H 0.28 6.24 8.31 -40.82 -0.34 5.90 16 33 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 34 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.12 2.49 8.06 -52.48 -0.42 2.07 16 LS Contribution 313.20 15.07 4.72 4.72 Total: -1.00 -30.67 313.20 -7.05 -37.72 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -4.08 Total: 7.43 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -3.31 Total: -5.62 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.59 Total: -42.78 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: 0.07 Total: -16.03 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.05 Total: 14.57 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.67 -7.05 -37.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147856489.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.837 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds