Wall clock time and date at job start Tue Mar 31 2020 05:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39215 * 125.57731 * 2 1 4 4 C 1.38190 * 107.68834 * 179.74269 * 3 2 1 5 5 C 1.46932 * 126.50956 * 180.28685 * 4 3 2 6 6 O 1.21687 * 119.99831 * 174.93339 * 5 4 3 7 7 N 1.34770 * 119.99965 * 354.92929 * 5 4 3 8 8 C 1.46502 * 120.00063 * 5.80101 * 7 5 4 9 9 C 1.36828 * 119.99901 * 185.79719 * 7 5 4 10 10 H 1.08005 * 120.00349 * 332.20515 * 9 7 5 11 11 C 1.39061 * 119.99809 * 152.20080 * 9 7 5 12 12 N 1.31363 * 119.99855 * 37.21933 * 11 9 7 13 13 Si 1.86802 * 120.00049 * 217.21321 * 11 9 7 14 14 H 1.48500 * 109.46987 * 60.00184 * 13 11 9 15 15 H 1.48495 * 109.47071 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46932 * 300.00526 * 13 11 9 17 17 N 1.37006 * 106.98061 * 0.38220 * 4 3 2 18 18 C 1.40011 * 126.16824 * 179.88139 * 17 4 3 19 19 C 1.38885 * 120.06947 * 119.69957 * 18 17 4 20 20 C 1.38103 * 119.92642 * 179.97438 * 19 18 17 21 21 C 1.38294 * 120.07192 * 359.97438 * 20 19 18 22 22 C 1.38290 * 120.14317 * 0.02562 * 21 20 19 23 23 C 1.38101 * 120.07030 * 0.02562 * 22 21 20 24 24 N 1.31036 * 125.57582 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47133 * 269.99773 * 1 2 3 26 26 H 1.09002 * 109.47003 * 29.99906 * 1 2 3 27 27 H 1.09005 * 109.47146 * 149.99466 * 1 2 3 28 28 H 1.08000 * 126.15816 * 359.96384 * 3 2 1 29 29 H 1.08999 * 109.47351 * 53.48598 * 8 7 5 30 30 H 1.09000 * 109.47097 * 173.49164 * 8 7 5 31 31 H 1.08997 * 109.46848 * 293.48633 * 8 7 5 32 32 H 0.97004 * 119.99692 * 180.02562 * 12 11 9 33 33 H 1.07999 * 120.03593 * 0.25334 * 19 18 17 34 34 H 1.08001 * 119.96620 * 179.97438 * 20 19 18 35 35 H 1.08001 * 119.92794 * 179.97438 * 21 20 19 36 36 H 1.07994 * 119.95926 * 179.97438 * 22 21 20 37 37 H 1.08004 * 120.03518 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3169 1.1323 0.0000 4 6 3.6320 0.7078 0.0059 5 6 4.8266 1.5632 0.0140 6 8 5.9319 1.0636 0.1117 7 7 4.6983 2.9009 -0.0870 8 6 3.3668 3.5119 -0.0767 9 6 5.8115 3.6885 -0.1990 10 1 6.7498 3.3606 0.2236 11 6 5.7349 4.9112 -0.8571 12 7 4.6595 5.6559 -0.7361 13 14 7.1612 5.4947 -1.9129 14 1 7.4034 4.5153 -3.0026 15 1 6.8330 6.8184 -2.5003 16 1 8.3811 5.6142 -1.0746 17 7 3.6103 -0.6621 0.0007 18 6 4.7274 -1.5062 0.0015 19 6 4.9198 -2.4047 1.0429 20 6 6.0224 -3.2363 1.0405 21 6 6.9341 -3.1753 0.0025 22 6 6.7454 -2.2817 -1.0359 23 6 5.6454 -1.4467 -1.0390 24 7 2.2693 -1.0658 0.0005 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5139 28 1 1.9784 2.1579 -0.0006 29 1 2.8193 3.1754 0.8037 30 1 3.4652 4.5971 -0.0506 31 1 2.8251 3.2178 -0.9757 32 1 4.6059 6.5086 -1.1955 33 1 4.2056 -2.4562 1.8514 34 1 6.1728 -3.9350 1.8502 35 1 7.7957 -3.8264 0.0031 36 1 7.4594 -2.2363 -1.8449 37 1 5.4988 -0.7487 -1.8500 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147856489.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:26 Heat of formation + Delta-G solvation = 89.134511 kcal Electronic energy + Delta-G solvation = -22250.666408 eV Core-core repulsion = 18995.602796 eV Total energy + Delta-G solvation = -3255.063612 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.55825 -40.07177 -39.82286 -36.91879 -34.89370 -34.07958 -32.09394 -31.76680 -31.03267 -28.53385 -27.98568 -26.98558 -24.16618 -23.65715 -23.15352 -21.45373 -20.24633 -19.29098 -18.48642 -17.63100 -17.20368 -16.92081 -16.51602 -16.00124 -15.93963 -15.65601 -15.19998 -14.88299 -14.63349 -14.49706 -14.15863 -13.80698 -13.65767 -13.57021 -13.31193 -13.29527 -13.21989 -12.59599 -12.51710 -12.28793 -12.15717 -12.12983 -11.41425 -10.91382 -10.74491 -10.49470 -10.03732 -9.97702 -9.82074 -9.37479 -8.50254 -6.00803 -0.14910 0.34522 0.44911 1.22124 1.35382 1.42185 1.49679 1.57090 2.17714 2.29338 2.66757 2.79527 2.99823 3.66094 3.73877 3.87320 3.89889 4.14556 4.19897 4.41076 4.42443 4.49795 4.59775 4.64655 4.72774 4.83668 4.86765 4.94759 4.99021 5.09017 5.18080 5.32011 5.37686 5.44129 5.64567 5.68396 5.76152 6.07050 6.13937 6.46768 6.60996 6.98798 7.25507 7.87363 8.35778 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.014606 B = 0.006347 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.572515 B = 4410.231985 C = 6015.985097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.068 3.932 3 C -0.256 4.256 4 C 0.048 3.952 5 C 0.473 3.527 6 O -0.615 6.615 7 N -0.420 5.420 8 C 0.021 3.979 9 C -0.369 4.369 10 H 0.076 0.924 11 C 0.035 3.965 12 N -0.838 5.838 13 Si 0.975 3.025 14 H -0.282 1.282 15 H -0.259 1.259 16 H -0.267 1.267 17 N -0.321 5.321 18 C 0.127 3.873 19 C -0.122 4.122 20 C -0.107 4.107 21 C -0.106 4.106 22 C -0.112 4.112 23 C -0.101 4.101 24 N -0.305 5.305 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.081 0.919 28 H 0.194 0.806 29 H 0.056 0.944 30 H 0.151 0.849 31 H 0.050 0.950 32 H 0.288 0.712 33 H 0.124 0.876 34 H 0.167 0.833 35 H 0.169 0.831 36 H 0.150 0.850 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.724 -9.696 -0.052 10.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.097 4.097 3 C -0.285 4.285 4 C -0.080 4.080 5 C 0.262 3.738 6 O -0.503 6.503 7 N -0.136 5.136 8 C -0.121 4.121 9 C -0.496 4.496 10 H 0.094 0.906 11 C -0.173 4.173 12 N -0.473 5.473 13 Si 0.797 3.203 14 H -0.208 1.208 15 H -0.183 1.183 16 H -0.192 1.192 17 N -0.100 5.100 18 C 0.037 3.963 19 C -0.142 4.142 20 C -0.126 4.126 21 C -0.124 4.124 22 C -0.131 4.131 23 C -0.122 4.122 24 N -0.127 5.127 25 H 0.114 0.886 26 H 0.120 0.880 27 H 0.100 0.900 28 H 0.210 0.790 29 H 0.075 0.925 30 H 0.168 0.832 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.142 0.858 34 H 0.184 0.816 35 H 0.187 0.813 36 H 0.168 0.832 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.199 -10.970 -0.052 11.747 hybrid contribution 0.548 1.410 -0.397 1.564 sum -3.651 -9.561 -0.449 10.244 Atomic orbital electron populations 1.20384 0.82442 1.04856 1.04616 1.23107 0.99183 0.89490 0.97907 1.23170 0.89454 1.02491 1.13409 1.21583 0.96650 0.84624 1.05102 1.17201 0.86941 0.82706 0.86908 1.90614 1.27621 1.74042 1.58058 1.43459 1.07901 1.03217 1.59040 1.23631 0.82435 1.07213 0.98808 1.19319 0.89537 1.02039 1.38656 0.90600 1.26042 1.00894 0.94721 0.95634 1.69297 1.30720 1.10702 1.36576 0.85315 0.78811 0.77399 0.78777 1.20762 1.18256 1.19222 1.45943 1.04431 1.02577 1.57008 1.17639 0.86740 0.94676 0.97234 1.21252 0.99804 0.96682 0.96415 1.21414 0.92665 0.98588 0.99892 1.21669 0.99849 0.98090 0.92772 1.21312 0.95960 0.95197 1.00622 1.21049 0.95867 0.98581 0.96695 1.77267 0.85246 1.23952 1.26251 0.88573 0.88022 0.90025 0.78958 0.92536 0.83220 0.93157 0.89939 0.85833 0.81570 0.81315 0.83185 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.39 10.43 71.23 0.74 -0.64 16 2 C 0.07 2.34 7.17 42.91 0.31 2.65 16 3 C -0.26 -9.94 8.71 22.49 0.20 -9.75 16 4 C 0.05 2.25 6.78 40.60 0.28 2.52 16 5 C 0.47 25.72 7.54 86.52 0.65 26.37 16 6 O -0.61 -36.54 14.14 -4.31 -0.06 -36.60 16 7 N -0.42 -22.50 3.02 -663.20 -2.00 -24.50 16 8 C 0.02 0.94 8.02 127.77 1.02 1.96 16 9 C -0.37 -20.81 9.08 84.11 0.76 -20.04 16 10 H 0.08 4.62 7.64 -2.91 -0.02 4.60 16 11 C 0.03 1.75 5.30 84.96 0.45 2.20 16 12 N -0.84 -40.32 10.22 21.68 0.22 -40.10 16 13 Si 0.97 40.40 29.68 68.60 2.04 42.44 16 14 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 15 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 16 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 17 N -0.32 -14.32 3.67 -176.32 -0.65 -14.97 16 18 C 0.13 5.32 5.33 38.15 0.20 5.53 16 19 C -0.12 -4.26 9.97 22.39 0.22 -4.04 16 20 C -0.11 -2.85 10.04 22.25 0.22 -2.62 16 21 C -0.11 -2.66 10.04 22.30 0.22 -2.43 16 22 C -0.11 -3.50 10.04 22.25 0.22 -3.28 16 23 C -0.10 -4.12 8.11 22.39 0.18 -3.94 16 24 N -0.30 -12.15 12.50 -47.70 -0.60 -12.74 16 25 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.19 6.67 4.08 -2.91 -0.01 6.66 16 29 H 0.06 2.28 6.22 -2.39 -0.01 2.26 16 30 H 0.15 7.10 4.37 -21.37 -0.09 7.01 16 31 H 0.05 2.09 6.77 -2.39 -0.02 2.07 16 32 H 0.29 12.57 8.31 -92.70 -0.77 11.80 16 33 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 34 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 35 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 36 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 37 H 0.09 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -71.29 313.20 5.66 -65.62 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 1.02 Total: 26.37 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 5.69 Total: -5.52 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -3.02 Total: -92.30 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: -0.06 Total: -36.60 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.04 Total: 42.44 kcal Total: -71.29 5.66 -65.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147856489.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.757 kcal (2) G-P(sol) polarization free energy of solvation -71.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds