Wall clock time and date at job start Tue Mar 31 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39867 * 125.90063 * 2 1 4 4 C 1.35322 * 107.92058 * 179.72187 * 3 2 1 5 5 N 1.34945 * 107.74388 * 0.42455 * 4 3 2 6 6 C 1.46499 * 126.03456 * 179.84283 * 5 4 3 7 7 C 1.50706 * 109.47251 * 124.71473 * 6 5 4 8 8 O 1.21285 * 119.99892 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00038 * 180.02562 * 7 6 5 10 10 C 1.39934 * 119.99876 * 184.52382 * 9 7 6 11 11 C 1.39296 * 119.94584 * 144.37712 * 10 9 7 12 12 C 1.38488 * 120.42844 * 179.97438 * 11 10 9 13 13 C 1.37681 * 120.32193 * 359.97438 * 12 11 10 14 14 C 1.40742 * 119.88541 * 0.02562 * 13 12 11 15 15 C 1.41413 * 120.20989 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99671 * 155.38048 * 15 14 13 17 17 C 1.39930 * 119.99901 * 335.38168 * 15 14 13 18 18 N 1.30823 * 119.99976 * 344.59124 * 17 15 14 19 19 Si 1.86799 * 119.99674 * 164.59780 * 17 15 14 20 20 H 1.48504 * 109.47081 * 94.96683 * 19 17 15 21 21 H 1.48500 * 109.46770 * 214.96452 * 19 17 15 22 22 H 1.48498 * 109.47394 * 334.96379 * 19 17 15 23 23 C 1.38239 * 119.95220 * 324.09937 * 10 9 7 24 24 N 1.30844 * 125.89882 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.47098 * 269.99480 * 1 2 3 26 26 H 1.08995 * 109.47799 * 29.99578 * 1 2 3 27 27 H 1.09002 * 109.47253 * 150.00079 * 1 2 3 28 28 H 1.07998 * 126.03788 * 359.97438 * 3 2 1 29 29 H 1.07997 * 126.12432 * 180.26823 * 4 3 2 30 30 H 1.09001 * 109.47410 * 4.71389 * 6 5 4 31 31 H 1.09000 * 109.46842 * 244.71119 * 6 5 4 32 32 H 0.97003 * 119.99921 * 4.52358 * 9 7 6 33 33 H 1.07999 * 119.78923 * 0.02629 * 11 10 9 34 34 H 1.08005 * 119.84125 * 180.02562 * 12 11 10 35 35 H 1.08001 * 120.05815 * 179.97438 * 13 12 11 36 36 H 0.97005 * 120.00070 * 180.02562 * 18 17 15 37 37 H 1.08006 * 120.15592 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0063 5 7 3.6087 -0.6342 0.0005 6 6 4.7898 -1.5008 0.0010 7 6 4.7122 -2.4553 1.1647 8 8 3.7637 -2.4152 1.9196 9 7 5.6970 -3.3527 1.3670 10 6 5.5804 -4.3008 2.3896 11 6 6.0851 -5.5862 2.2070 12 6 5.9756 -6.5322 3.2125 13 6 5.3665 -6.2118 4.4049 14 6 4.8518 -4.9170 4.6038 15 6 4.2244 -4.5807 5.8257 16 1 4.1879 -3.5506 6.1483 17 6 3.6509 -5.5824 6.6167 18 7 3.4222 -6.7662 6.1088 19 14 3.2118 -5.2293 8.3976 20 1 1.7831 -4.8338 8.4861 21 1 3.4395 -6.4483 9.2146 22 1 4.0635 -4.1251 8.9080 23 6 4.9696 -3.9587 3.5816 24 7 2.2742 -1.0599 0.0005 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8899 -0.5137 27 1 -0.3634 -0.8900 -0.5138 28 1 1.9923 2.1597 -0.0004 29 1 4.4891 1.3485 0.0120 30 1 5.6884 -0.8904 0.0912 31 1 4.8263 -2.0658 -0.9305 32 1 6.4867 -3.3414 0.8038 33 1 6.5657 -5.8466 1.2755 34 1 6.3707 -7.5259 3.0608 35 1 5.2831 -6.9529 5.1860 36 1 3.0243 -7.4605 6.6571 37 1 4.5816 -2.9611 3.7257 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177062607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:59 Heat of formation + Delta-G solvation = 69.313515 kcal Electronic energy + Delta-G solvation = -21250.108316 eV Core-core repulsion = 17994.185201 eV Total energy + Delta-G solvation = -3255.923114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.15666 -39.56421 -37.17119 -34.49974 -33.82622 -33.03335 -30.53311 -29.81691 -29.51504 -28.13352 -25.83971 -25.27036 -21.89156 -21.05285 -20.83344 -20.01485 -19.41971 -17.87342 -16.94878 -16.85938 -15.54293 -15.38583 -14.92627 -14.64040 -14.56330 -14.07855 -13.61234 -13.59197 -13.15329 -12.90440 -12.86803 -12.55757 -12.24499 -12.04902 -12.00694 -11.61793 -11.31520 -11.08338 -10.69563 -10.49169 -10.39472 -10.16722 -9.75694 -9.54676 -9.24987 -9.03237 -8.82538 -8.46477 -7.44237 -6.93505 -6.69770 -4.32760 1.94184 2.43926 2.57091 2.83821 2.90752 3.10155 3.14763 3.17107 3.26139 3.55526 3.97879 4.48359 4.65372 4.75507 4.88626 4.91110 5.00292 5.30014 5.66483 5.68991 5.72924 5.85766 5.90600 6.14480 6.24009 6.38882 6.71222 6.76052 6.94529 7.03959 7.06136 7.09222 7.27288 7.55092 7.72096 7.86338 7.96964 8.09742 8.14872 8.25498 8.60575 8.70776 8.94912 8.99031 10.23788 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.016558 B = 0.004248 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.621123 B = 6589.720360 C = 7772.039308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.061 3.939 3 C -0.270 4.270 4 C 0.051 3.949 5 N -0.361 5.361 6 C 0.118 3.882 7 C 0.486 3.514 8 O -0.482 6.482 9 N -0.667 5.667 10 C 0.149 3.851 11 C -0.261 4.261 12 C -0.093 4.093 13 C -0.172 4.172 14 C 0.117 3.883 15 C -0.455 4.455 16 H 0.076 0.924 17 C 0.075 3.925 18 N -0.794 5.794 19 Si 0.909 3.091 20 H -0.270 1.270 21 H -0.275 1.275 22 H -0.261 1.261 23 C -0.209 4.209 24 N -0.259 5.259 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.145 0.855 29 H 0.172 0.828 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.398 0.602 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.280 0.720 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.520 11.262 -11.400 16.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.107 4.107 3 C -0.300 4.300 4 C -0.094 4.094 5 N -0.143 5.143 6 C -0.008 4.008 7 C 0.269 3.731 8 O -0.353 6.353 9 N -0.313 5.313 10 C 0.057 3.943 11 C -0.283 4.283 12 C -0.112 4.112 13 C -0.192 4.192 14 C 0.114 3.886 15 C -0.485 4.485 16 H 0.095 0.905 17 C -0.143 4.143 18 N -0.420 5.420 19 Si 0.734 3.266 20 H -0.195 1.195 21 H -0.200 1.200 22 H -0.185 1.185 23 C -0.231 4.231 24 N -0.081 5.081 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.163 0.837 29 H 0.189 0.811 30 H 0.140 0.860 31 H 0.130 0.870 32 H 0.232 0.768 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.140 0.860 36 H 0.091 0.909 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.858 9.734 -10.814 14.668 hybrid contribution 0.308 0.919 0.442 1.066 sum 2.167 10.653 -10.372 15.025 Atomic orbital electron populations 1.20134 0.86884 1.02822 1.03018 1.22401 0.97048 0.90862 1.00346 1.21326 0.91634 0.99601 1.17419 1.22483 0.99759 0.84536 1.02615 1.47990 1.05010 1.04127 1.57197 1.21470 0.85893 0.93729 0.99713 1.20484 0.83553 0.82407 0.86675 1.90858 1.31695 1.68027 1.44707 1.43319 1.20737 1.32522 1.34681 1.17402 1.01880 0.87796 0.87176 1.20035 1.15179 0.92797 1.00269 1.20470 0.99694 0.96665 0.94359 1.21416 1.01857 0.98552 0.97386 1.17519 0.88529 0.91076 0.91467 1.19570 1.31233 0.94769 1.02893 0.90543 1.25903 0.93617 0.94418 1.00321 1.69823 1.31413 1.03805 1.36945 0.86282 0.79516 0.79079 0.81753 1.19550 1.20022 1.18455 1.21043 1.08984 1.00984 0.92064 1.77530 0.85861 1.22264 1.22475 0.90542 0.90761 0.91083 0.83699 0.81086 0.86011 0.87004 0.76819 0.89307 0.89028 0.86023 0.90942 0.87373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.45 36.00 0.38 -0.42 16 2 C 0.06 0.91 7.22 -82.41 -0.59 0.32 16 3 C -0.27 -3.40 10.74 -40.01 -0.43 -3.82 16 4 C 0.05 0.61 11.45 -17.22 -0.20 0.41 16 5 N -0.36 -5.34 3.40 -62.54 -0.21 -5.55 16 6 C 0.12 1.40 6.99 -5.19 -0.04 1.37 16 7 C 0.49 8.67 7.70 -10.99 -0.08 8.58 16 8 O -0.48 -11.48 13.19 5.55 0.07 -11.41 16 9 N -0.67 -11.47 5.33 -9.91 -0.05 -11.52 16 10 C 0.15 3.38 6.28 -83.77 -0.53 2.86 16 11 C -0.26 -5.77 9.97 -39.10 -0.39 -6.16 16 12 C -0.09 -2.19 10.02 -39.69 -0.40 -2.59 16 13 C -0.17 -4.59 8.69 -38.84 -0.34 -4.93 16 14 C 0.12 3.29 5.58 -106.85 -0.60 2.69 16 15 C -0.46 -12.77 9.06 -37.74 -0.34 -13.11 16 16 H 0.08 2.10 7.89 -52.49 -0.41 1.68 16 17 C 0.07 1.96 5.19 -17.35 -0.09 1.87 16 18 N -0.79 -21.30 10.82 55.55 0.60 -20.70 16 19 Si 0.91 19.47 29.59 -169.99 -5.03 14.44 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 23 C -0.21 -5.54 8.43 -38.69 -0.33 -5.87 16 24 N -0.26 -4.65 11.64 33.67 0.39 -4.26 16 25 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.15 1.40 8.06 -52.49 -0.42 0.97 16 29 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 30 H 0.12 0.88 8.07 -51.93 -0.42 0.46 16 31 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.40 4.86 8.82 -40.82 -0.36 4.50 16 33 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 35 H 0.12 3.32 6.07 -52.49 -0.32 3.00 16 36 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 37 H 0.11 2.99 6.27 -52.48 -0.33 2.66 16 LS Contribution 323.26 15.07 4.87 4.87 Total: -1.00 -36.02 323.26 -7.69 -43.71 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -4.36 Total: 9.24 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -3.97 Total: -18.82 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.73 Total: -42.03 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.07 Total: -11.41 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -36.02 -7.69 -43.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177062607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.021 kcal (2) G-P(sol) polarization free energy of solvation -36.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds