Wall clock time and date at job start Tue Mar 31 2020 05:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39867 * 125.90063 * 2 1 4 4 C 1.35322 * 107.92058 * 179.72187 * 3 2 1 5 5 N 1.34945 * 107.74388 * 0.42455 * 4 3 2 6 6 C 1.46499 * 126.03456 * 179.84283 * 5 4 3 7 7 C 1.50706 * 109.47251 * 124.71473 * 6 5 4 8 8 O 1.21285 * 119.99892 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00038 * 180.02562 * 7 6 5 10 10 C 1.39934 * 119.99876 * 184.52382 * 9 7 6 11 11 C 1.39296 * 119.94584 * 144.37712 * 10 9 7 12 12 C 1.38488 * 120.42844 * 179.97438 * 11 10 9 13 13 C 1.37681 * 120.32193 * 359.97438 * 12 11 10 14 14 C 1.40742 * 119.88541 * 0.02562 * 13 12 11 15 15 C 1.41413 * 120.20989 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99671 * 155.38048 * 15 14 13 17 17 C 1.39930 * 119.99901 * 335.38168 * 15 14 13 18 18 N 1.30823 * 119.99976 * 344.59124 * 17 15 14 19 19 Si 1.86799 * 119.99674 * 164.59780 * 17 15 14 20 20 H 1.48504 * 109.47081 * 94.96683 * 19 17 15 21 21 H 1.48500 * 109.46770 * 214.96452 * 19 17 15 22 22 H 1.48498 * 109.47394 * 334.96379 * 19 17 15 23 23 C 1.38239 * 119.95220 * 324.09937 * 10 9 7 24 24 N 1.30844 * 125.89882 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.47098 * 269.99480 * 1 2 3 26 26 H 1.08995 * 109.47799 * 29.99578 * 1 2 3 27 27 H 1.09002 * 109.47253 * 150.00079 * 1 2 3 28 28 H 1.07998 * 126.03788 * 359.97438 * 3 2 1 29 29 H 1.07997 * 126.12432 * 180.26823 * 4 3 2 30 30 H 1.09001 * 109.47410 * 4.71389 * 6 5 4 31 31 H 1.09000 * 109.46842 * 244.71119 * 6 5 4 32 32 H 0.97003 * 119.99921 * 4.52358 * 9 7 6 33 33 H 1.07999 * 119.78923 * 0.02629 * 11 10 9 34 34 H 1.08005 * 119.84125 * 180.02562 * 12 11 10 35 35 H 1.08001 * 120.05815 * 179.97438 * 13 12 11 36 36 H 0.97005 * 120.00070 * 180.02562 * 18 17 15 37 37 H 1.08006 * 120.15592 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0063 5 7 3.6087 -0.6342 0.0005 6 6 4.7898 -1.5008 0.0010 7 6 4.7122 -2.4553 1.1647 8 8 3.7637 -2.4152 1.9196 9 7 5.6970 -3.3527 1.3670 10 6 5.5804 -4.3008 2.3896 11 6 6.0851 -5.5862 2.2070 12 6 5.9756 -6.5322 3.2125 13 6 5.3665 -6.2118 4.4049 14 6 4.8518 -4.9170 4.6038 15 6 4.2244 -4.5807 5.8257 16 1 4.1879 -3.5506 6.1483 17 6 3.6509 -5.5824 6.6167 18 7 3.4222 -6.7662 6.1088 19 14 3.2118 -5.2293 8.3976 20 1 1.7831 -4.8338 8.4861 21 1 3.4395 -6.4483 9.2146 22 1 4.0635 -4.1251 8.9080 23 6 4.9696 -3.9587 3.5816 24 7 2.2742 -1.0599 0.0005 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8899 -0.5137 27 1 -0.3634 -0.8900 -0.5138 28 1 1.9923 2.1597 -0.0004 29 1 4.4891 1.3485 0.0120 30 1 5.6884 -0.8904 0.0912 31 1 4.8263 -2.0658 -0.9305 32 1 6.4867 -3.3414 0.8038 33 1 6.5657 -5.8466 1.2755 34 1 6.3707 -7.5259 3.0608 35 1 5.2831 -6.9529 5.1860 36 1 3.0243 -7.4605 6.6571 37 1 4.5816 -2.9611 3.7257 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177062607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:58 Heat of formation + Delta-G solvation = 44.358247 kcal Electronic energy + Delta-G solvation = -21251.190457 eV Core-core repulsion = 17994.185201 eV Total energy + Delta-G solvation = -3257.005256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.18425 -41.07025 -38.98690 -36.26009 -34.98203 -34.75326 -31.78611 -31.58990 -30.62656 -29.68801 -27.33674 -26.90849 -23.47375 -22.76703 -22.00931 -21.48721 -20.60540 -19.61047 -18.39067 -17.98902 -17.33721 -16.83905 -16.53900 -16.35725 -15.86431 -15.24275 -15.01834 -14.88577 -14.61038 -14.43322 -13.99901 -13.92206 -13.60189 -13.53135 -13.18066 -13.00357 -12.88270 -12.84923 -12.60899 -12.23933 -12.02377 -11.61572 -11.41398 -11.28644 -10.96221 -10.67348 -10.11833 -9.47021 -9.41347 -8.77776 -8.65030 -6.41014 0.82831 0.94968 0.99073 1.32489 1.43285 1.48768 1.52548 1.68966 1.92603 2.16898 2.23583 2.69968 3.57855 3.70730 3.72660 4.01030 4.08678 4.14762 4.44847 4.45053 4.61497 4.78805 4.82387 4.93733 5.01359 5.02680 5.07393 5.09753 5.20105 5.24444 5.30710 5.71056 5.78317 5.83912 6.04929 6.08639 6.15062 6.31784 6.60384 6.66219 6.85106 6.90487 6.97876 7.29965 8.30705 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.016558 B = 0.004248 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.621123 B = 6589.720360 C = 7772.039308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.043 3.957 3 C -0.285 4.285 4 C 0.060 3.940 5 N -0.376 5.376 6 C 0.126 3.874 7 C 0.480 3.520 8 O -0.550 6.550 9 N -0.652 5.652 10 C 0.156 3.844 11 C -0.248 4.248 12 C -0.093 4.093 13 C -0.199 4.199 14 C 0.085 3.915 15 C -0.502 4.502 16 H 0.062 0.938 17 C 0.034 3.966 18 N -0.826 5.826 19 Si 0.984 3.016 20 H -0.266 1.266 21 H -0.256 1.256 22 H -0.260 1.260 23 C -0.238 4.238 24 N -0.330 5.330 25 H 0.071 0.929 26 H 0.105 0.895 27 H 0.063 0.937 28 H 0.172 0.828 29 H 0.221 0.779 30 H 0.180 0.820 31 H 0.143 0.857 32 H 0.427 0.573 33 H 0.136 0.864 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.289 0.711 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.249 12.368 -13.266 18.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.124 4.124 3 C -0.314 4.314 4 C -0.085 4.085 5 N -0.158 5.158 6 C 0.002 3.998 7 C 0.266 3.734 8 O -0.425 6.425 9 N -0.300 5.300 10 C 0.063 3.937 11 C -0.269 4.269 12 C -0.112 4.112 13 C -0.219 4.219 14 C 0.082 3.918 15 C -0.532 4.532 16 H 0.080 0.920 17 C -0.180 4.180 18 N -0.452 5.452 19 Si 0.804 3.196 20 H -0.191 1.191 21 H -0.180 1.180 22 H -0.183 1.183 23 C -0.260 4.260 24 N -0.153 5.153 25 H 0.090 0.910 26 H 0.124 0.876 27 H 0.082 0.918 28 H 0.190 0.810 29 H 0.237 0.763 30 H 0.197 0.803 31 H 0.160 0.840 32 H 0.266 0.734 33 H 0.154 0.846 34 H 0.142 0.858 35 H 0.125 0.875 36 H 0.100 0.900 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.634 10.847 -12.744 17.125 hybrid contribution -0.165 0.621 0.841 1.059 sum 3.468 11.468 -11.903 16.888 Atomic orbital electron populations 1.20240 0.85529 1.04041 1.03031 1.23019 0.98397 0.91413 0.99541 1.21769 0.91823 1.00273 1.17547 1.23313 1.01279 0.83827 1.00037 1.48235 1.04564 1.05461 1.57545 1.21784 0.87131 0.93476 0.97440 1.21673 0.82113 0.82292 0.87281 1.90850 1.34308 1.69847 1.47512 1.43186 1.22054 1.31273 1.33456 1.17485 0.99745 0.89342 0.87127 1.20510 1.13355 0.91664 1.01328 1.20872 0.98360 0.98562 0.93390 1.21381 1.03891 0.97846 0.98781 1.17874 0.89396 0.92339 0.92195 1.19766 1.33894 0.94846 1.04707 0.91981 1.26754 0.92819 0.93854 1.04591 1.69864 1.31925 1.04686 1.38719 0.85179 0.79079 0.79475 0.75848 1.19133 1.17986 1.18347 1.20993 1.11143 0.99880 0.93941 1.77429 0.87990 1.24544 1.25306 0.91026 0.87608 0.91793 0.81040 0.76269 0.80255 0.83969 0.73430 0.84616 0.85819 0.87540 0.90039 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.61 10.45 71.23 0.74 -0.86 16 2 C 0.04 1.28 7.22 43.10 0.31 1.59 16 3 C -0.29 -6.62 10.74 21.99 0.24 -6.38 16 4 C 0.06 1.24 11.45 83.54 0.96 2.20 16 5 N -0.38 -10.36 3.40 -351.79 -1.20 -11.56 16 6 C 0.13 2.57 6.99 85.63 0.60 3.17 16 7 C 0.48 16.59 7.70 87.66 0.67 17.26 16 8 O -0.55 -27.12 13.19 -3.04 -0.04 -27.16 16 9 N -0.65 -20.99 5.33 -303.66 -1.62 -22.61 16 10 C 0.16 7.01 6.28 38.10 0.24 7.25 16 11 C -0.25 -10.32 9.97 22.58 0.23 -10.10 16 12 C -0.09 -4.30 10.02 22.20 0.22 -4.08 16 13 C -0.20 -10.96 8.69 22.75 0.20 -10.76 16 14 C 0.08 5.02 5.58 -21.31 -0.12 4.90 16 15 C -0.50 -30.12 9.06 23.46 0.21 -29.91 16 16 H 0.06 3.71 7.89 -2.91 -0.02 3.69 16 17 C 0.03 1.86 5.19 85.25 0.44 2.30 16 18 N -0.83 -46.01 10.82 21.82 0.24 -45.77 16 19 Si 0.98 41.31 29.59 68.60 2.03 43.34 16 20 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 21 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 22 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 23 C -0.24 -13.18 8.43 22.85 0.19 -12.99 16 24 N -0.33 -11.94 11.64 -47.39 -0.55 -12.49 16 25 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.11 1.66 8.14 -2.39 -0.02 1.65 16 27 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 29 H 0.22 2.11 8.06 -2.91 -0.02 2.08 16 30 H 0.18 1.53 8.07 -2.39 -0.02 1.51 16 31 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.43 8.62 8.82 -92.71 -0.82 7.80 16 33 H 0.14 4.40 8.06 -2.91 -0.02 4.37 16 34 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 35 H 0.11 6.08 6.07 -2.91 -0.02 6.06 16 36 H 0.29 14.40 8.30 -92.70 -0.77 13.64 16 37 H 0.08 4.92 6.27 -2.91 -0.02 4.90 16 Total: -1.00 -87.80 323.26 4.28 -83.52 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: 0.28 Total: 29.15 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 5.13 Total: -36.41 kcal Atomic # 7 Polarization: -89.30 SS G_CDS: -3.13 Total: -92.43 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.04 Total: -27.16 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -87.80 4.28 -83.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177062607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.879 kcal (2) G-P(sol) polarization free energy of solvation -87.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds