Wall clock time and date at job start Tue Mar 31 2020 05:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35667 * 117.00088 * 2 1 4 4 N 1.32245 * 119.56813 * 0.02592 * 3 2 1 5 5 C 1.31758 * 121.87492 * 179.71929 * 4 3 2 6 6 C 1.39545 * 120.76433 * 0.54830 * 5 4 3 7 7 C 1.47858 * 120.46820 * 179.71933 * 6 5 4 8 8 C 1.39968 * 119.45713 * 359.97251 * 7 6 5 9 9 C 1.36559 * 119.46587 * 180.25487 * 8 7 6 10 10 C 1.41325 * 118.41821 * 359.50435 * 9 8 7 11 11 C 1.41027 * 120.54680 * 180.27541 * 10 9 8 12 12 H 1.08004 * 119.99948 * 154.63021 * 11 10 9 13 13 C 1.39986 * 120.00205 * 334.62630 * 11 10 9 14 14 N 1.30820 * 119.99707 * 343.62837 * 13 11 10 15 15 Si 1.86800 * 120.00134 * 163.62692 * 13 11 10 16 16 H 1.48491 * 109.47241 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46915 * 120.00367 * 15 13 11 18 18 H 1.48500 * 109.46834 * 239.99923 * 15 13 11 19 19 C 1.40954 * 118.90511 * 0.25006 * 10 9 8 20 20 C 1.50695 * 119.80052 * 179.97438 * 19 10 9 21 21 N 1.31262 * 120.39949 * 0.02562 * 19 10 9 22 22 C 1.40162 * 119.06218 * 359.44407 * 6 5 4 23 23 C 1.38585 * 118.29488 * 0.27928 * 22 6 5 24 24 N 1.39958 * 120.43194 * 180.02562 * 23 22 6 25 25 H 1.09004 * 109.47091 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46767 * 299.99502 * 1 2 3 27 27 H 1.09000 * 109.47268 * 59.99566 * 1 2 3 28 28 H 1.08000 * 119.61801 * 180.28756 * 5 4 3 29 29 H 1.08000 * 120.26377 * 0.02562 * 8 7 6 30 30 H 1.07997 * 120.78640 * 179.78096 * 9 8 7 31 31 H 0.96998 * 119.99637 * 179.97438 * 14 13 11 32 32 H 1.09001 * 109.46977 * 90.00292 * 20 19 10 33 33 H 1.08988 * 109.47688 * 210.00096 * 20 19 10 34 34 H 1.09004 * 109.47227 * 330.00672 * 20 19 10 35 35 H 1.08001 * 120.85367 * 180.29734 * 22 6 5 36 36 H 0.96997 * 120.00316 * 0.02562 * 24 23 22 37 37 H 0.97006 * 120.00030 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 7 1.3164 2.3124 0.0005 5 6 1.8668 3.5095 0.0060 6 6 3.2544 3.6571 0.0001 7 6 3.8651 5.0037 0.0001 8 6 3.0395 6.1339 0.0055 9 6 3.6034 7.3777 0.0002 10 6 5.0131 7.4771 0.0001 11 6 5.6427 8.7390 0.0006 12 1 6.6401 8.8448 0.4013 13 6 4.9750 9.8546 -0.5184 14 7 3.9257 9.6918 -1.2825 15 14 5.5822 11.5756 -0.1197 16 1 6.7773 11.4880 0.7572 17 1 5.9424 12.2772 -1.3779 18 1 4.5098 12.3295 0.5780 19 6 5.7795 6.2941 0.0001 20 6 7.2842 6.3765 -0.0006 21 7 5.1905 5.1211 -0.0004 22 6 4.0610 2.5109 0.0000 23 6 3.4411 1.2714 0.0000 24 7 4.2034 0.0976 0.0004 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.2367 4.3867 0.0110 29 1 1.9652 6.0233 0.0101 30 1 2.9866 8.2642 0.0007 31 1 3.4628 10.4648 -1.6418 32 1 7.6474 6.3966 1.0269 33 1 7.6955 5.5078 -0.5144 34 1 7.5981 7.2850 -0.5147 35 1 5.1380 2.5915 0.0003 36 1 5.1720 0.1483 0.0012 37 1 3.7629 -0.7667 0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239630204.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:47 Heat of formation + Delta-G solvation = -3.795623 kcal Electronic energy + Delta-G solvation = -21284.444382 eV Core-core repulsion = 18025.351017 eV Total energy + Delta-G solvation = -3259.093365 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.54742 -40.30762 -38.59700 -36.17719 -35.94665 -34.04671 -32.86323 -31.49909 -29.97507 -28.74889 -28.25787 -26.54910 -24.29491 -24.12974 -22.43088 -21.82433 -19.37171 -19.16186 -18.56691 -17.72965 -17.25484 -16.89357 -16.41413 -16.37604 -16.16569 -15.28746 -15.02426 -14.93832 -14.63046 -14.39436 -14.13635 -13.75042 -13.44871 -13.36254 -13.15571 -13.02588 -12.78037 -12.63202 -12.52578 -12.24164 -12.19425 -11.97163 -11.63309 -11.25009 -10.65411 -10.39168 -10.09871 -9.92243 -9.14248 -8.73951 -8.26397 -6.37559 -0.04694 0.47685 0.96787 1.15757 1.41438 1.55819 1.57825 2.17170 2.22289 2.62765 2.90174 3.04063 3.55179 3.69992 3.73909 4.07491 4.24197 4.35071 4.51157 4.52864 4.57623 4.62488 4.68738 4.79043 4.84030 5.00076 5.01636 5.06737 5.16602 5.27907 5.47202 5.49559 5.56671 5.82892 5.96031 6.03548 6.18380 6.48328 6.56236 6.70715 6.78315 6.98375 7.03133 7.72664 8.18199 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.033149 B = 0.003649 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.466954 B = 7672.273019 C = 8430.469432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.320 6.320 3 C 0.215 3.785 4 N -0.502 5.502 5 C 0.055 3.945 6 C -0.033 4.033 7 C -0.003 4.003 8 C -0.130 4.130 9 C -0.163 4.163 10 C 0.045 3.955 11 C -0.454 4.454 12 H 0.096 0.904 13 C 0.034 3.966 14 N -0.808 5.808 15 Si 0.987 3.013 16 H -0.251 1.251 17 H -0.266 1.266 18 H -0.265 1.265 19 C -0.012 4.012 20 C -0.064 4.064 21 N -0.456 5.456 22 C -0.134 4.134 23 C 0.167 3.833 24 N -0.854 5.854 25 H 0.124 0.876 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.163 0.837 29 H 0.125 0.875 30 H 0.117 0.883 31 H 0.295 0.705 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.142 0.858 36 H 0.409 0.591 37 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.779 -10.182 1.820 10.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.228 6.228 3 C 0.031 3.969 4 N -0.223 5.223 5 C -0.103 4.103 6 C -0.037 4.037 7 C -0.137 4.137 8 C -0.150 4.150 9 C -0.188 4.188 10 C 0.040 3.960 11 C -0.482 4.482 12 H 0.114 0.886 13 C -0.184 4.184 14 N -0.432 5.432 15 Si 0.807 3.193 16 H -0.175 1.175 17 H -0.191 1.191 18 H -0.190 1.190 19 C -0.158 4.158 20 C -0.122 4.122 21 N -0.165 5.165 22 C -0.165 4.165 23 C 0.059 3.941 24 N -0.398 5.398 25 H 0.142 0.858 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.180 0.820 29 H 0.143 0.857 30 H 0.134 0.866 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.160 0.840 36 H 0.239 0.761 37 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -2.308 -11.138 1.660 11.495 hybrid contribution 0.211 1.650 -0.064 1.664 sum -2.097 -9.488 1.596 9.847 Atomic orbital electron populations 1.22945 0.76385 1.04247 1.01727 1.86035 1.23758 1.23559 1.89462 1.19453 0.87949 0.85591 1.03921 1.67043 1.40046 0.98483 1.16768 1.22233 0.91696 0.93514 1.02859 1.19263 0.93599 0.91800 0.99009 1.18956 0.89022 0.91445 1.14325 1.21529 0.99841 0.93010 1.00626 1.21337 0.95421 0.96498 1.05499 1.18784 0.92896 0.94436 0.89881 1.19978 1.02756 0.92061 1.33385 0.88566 1.26948 0.93907 1.05865 0.91698 1.69844 1.16766 1.35267 1.21293 0.85057 0.79678 0.75186 0.79334 1.17459 1.19058 1.19011 1.21561 0.97033 0.87681 1.09493 1.20246 0.88719 1.01783 1.01442 1.66796 1.11199 1.28251 1.10255 1.20947 1.00741 0.88990 1.05820 1.17668 0.88083 0.88969 0.99340 1.42123 1.08560 1.04296 1.84776 0.85760 0.93167 0.93237 0.82021 0.85678 0.86566 0.89448 0.91896 0.92060 0.91324 0.84027 0.76106 0.75970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.88 10.38 113.37 1.18 2.06 16 2 O -0.32 -8.73 9.73 -89.83 -0.87 -9.60 16 3 C 0.22 7.06 7.52 85.00 0.64 7.70 16 4 N -0.50 -17.63 9.18 -307.23 -2.82 -20.45 16 5 C 0.05 2.04 10.58 85.02 0.90 2.94 16 6 C -0.03 -1.34 5.89 -19.95 -0.12 -1.46 16 7 C 0.00 -0.12 6.74 41.93 0.28 0.16 16 8 C -0.13 -6.07 9.39 22.30 0.21 -5.86 16 9 C -0.16 -8.27 8.73 22.64 0.20 -8.08 16 10 C 0.04 2.30 5.58 -21.17 -0.12 2.19 16 11 C -0.45 -22.14 8.13 23.38 0.19 -21.95 16 12 H 0.10 4.39 6.87 -2.91 -0.02 4.37 16 13 C 0.03 1.54 5.18 85.27 0.44 1.98 16 14 N -0.81 -39.00 10.96 21.83 0.24 -38.76 16 15 Si 0.99 34.47 29.59 68.60 2.03 36.50 16 16 H -0.25 -8.48 7.11 99.48 0.71 -7.77 16 17 H -0.27 -8.97 7.11 99.48 0.71 -8.27 16 18 H -0.27 -9.03 7.11 99.48 0.71 -8.32 16 19 C -0.01 -0.60 6.86 43.31 0.30 -0.30 16 20 C -0.06 -2.57 9.57 71.23 0.68 -1.89 16 21 N -0.46 -22.01 9.37 -170.99 -1.60 -23.61 16 22 C -0.13 -4.88 9.54 22.82 0.22 -4.66 16 23 C 0.17 5.27 6.80 38.29 0.26 5.53 16 24 N -0.85 -19.45 9.09 -50.87 -0.46 -19.91 16 25 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.05 1.10 8.10 -2.38 -0.02 1.08 16 27 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 28 H 0.16 5.58 6.15 -2.91 -0.02 5.56 16 29 H 0.13 5.05 6.17 -2.91 -0.02 5.04 16 30 H 0.12 6.02 6.27 -2.91 -0.02 6.00 16 31 H 0.29 12.73 8.30 -92.71 -0.77 11.96 16 32 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.07 2.67 6.77 -2.38 -0.02 2.66 16 35 H 0.14 5.13 7.61 -2.91 -0.02 5.11 16 36 H 0.41 7.68 8.85 -92.71 -0.82 6.85 16 37 H 0.41 7.91 8.21 -92.70 -0.76 7.15 16 Total: -1.00 -60.15 315.93 1.33 -58.82 By element: Atomic # 1 Polarization: 39.08 SS G_CDS: -0.44 Total: 38.64 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 5.26 Total: -21.64 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -4.65 Total: -102.73 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.87 Total: -9.60 kcal Atomic # 14 Polarization: 34.47 SS G_CDS: 2.03 Total: 36.50 kcal Total: -60.15 1.33 -58.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239630204.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.027 kcal (2) G-P(sol) polarization free energy of solvation -60.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds