Wall clock time and date at job start Tue Mar 31 2020 05:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37695 * 119.96530 * 2 1 4 4 C 1.39756 * 119.93306 * 179.97438 * 3 2 1 5 5 C 1.47801 * 120.07191 * 179.97438 * 4 3 2 6 6 C 1.40019 * 119.90208 * 130.00067 * 5 4 3 7 7 C 1.36183 * 120.13688 * 180.02562 * 6 5 4 8 8 C 1.40995 * 119.93483 * 0.02562 * 7 6 5 9 9 C 1.40979 * 120.10139 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99990 * 24.73295 * 9 8 7 11 11 C 1.39950 * 120.00081 * 204.73681 * 9 8 7 12 12 N 1.30837 * 119.99982 * 17.98608 * 11 9 8 13 13 Si 1.86804 * 119.99903 * 197.98294 * 11 9 8 14 14 H 1.48500 * 109.46725 * 60.00077 * 13 11 9 15 15 H 1.48500 * 109.46890 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47285 * 300.00033 * 13 11 9 17 17 C 1.40902 * 119.80140 * 0.02562 * 8 7 6 18 18 C 1.36417 * 119.86488 * 359.97438 * 17 8 7 19 19 F 1.35105 * 119.96727 * 180.02562 * 18 17 8 20 20 C 1.39763 * 119.85620 * 0.25508 * 4 3 2 21 21 C 1.37693 * 119.93013 * 359.53542 * 20 4 3 22 22 C 1.50702 * 119.96372 * 180.21130 * 21 20 4 23 23 C 1.39173 * 119.96415 * 180.02562 * 2 1 3 24 24 N 1.39335 * 119.93513 * 359.97438 * 23 2 1 25 25 H 1.09000 * 109.46760 * 89.99811 * 1 2 3 26 26 H 1.08993 * 109.47062 * 209.99773 * 1 2 3 27 27 H 1.09002 * 109.47281 * 330.00171 * 1 2 3 28 28 H 1.08006 * 120.03387 * 359.97438 * 3 2 1 29 29 H 1.08002 * 119.92924 * 359.72394 * 6 5 4 30 30 H 1.08005 * 120.03472 * 179.97438 * 7 6 5 31 31 H 0.97005 * 119.99874 * 180.02562 * 12 11 9 32 32 H 1.08000 * 120.06526 * 179.97438 * 17 8 7 33 33 H 1.07997 * 120.03126 * 179.72421 * 20 4 3 34 34 H 1.09007 * 109.46721 * 270.23494 * 22 21 20 35 35 H 1.09002 * 109.47035 * 30.22628 * 22 21 20 36 36 H 1.08995 * 109.47194 * 150.23444 * 22 21 20 37 37 H 0.97002 * 119.99472 * 0.02562 * 24 23 2 38 38 H 0.96993 * 120.00675 * 180.02562 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1929 0.0000 4 6 3.5924 1.1921 0.0005 5 6 4.3337 2.4708 0.0000 6 6 5.3584 2.6839 0.9300 7 6 6.0442 3.8604 0.9341 8 6 5.7214 4.8663 0.0003 9 6 6.4295 6.0853 0.0010 10 1 7.4321 6.1273 0.4003 11 6 5.8331 7.2412 -0.5156 12 7 4.5351 7.2942 -0.6710 13 14 6.8904 8.7085 -0.9832 14 1 7.8602 8.3052 -2.0330 15 1 6.0243 9.7974 -1.5022 16 1 7.6273 9.1891 0.2131 17 6 4.6890 4.6493 -0.9338 18 6 4.0073 3.4677 -0.9306 19 9 3.0173 3.2573 -1.8256 20 6 4.2874 -0.0204 -0.0043 21 6 3.5939 -1.2099 0.0001 22 6 4.3427 -2.5178 -0.0004 23 6 2.2022 -1.2057 -0.0005 24 7 1.5034 -2.4112 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6548 2.1282 -0.0004 29 1 5.6022 1.9155 1.6488 30 1 6.8341 4.0233 1.6525 31 1 4.1218 8.0952 -1.0295 32 1 4.4379 5.4170 -1.6507 33 1 5.3674 -0.0243 -0.0084 34 1 4.5233 -2.8326 -1.0282 35 1 5.2956 -2.3910 0.5135 36 1 3.7508 -3.2754 0.5131 37 1 0.5333 -2.4094 -0.0005 38 1 1.9867 -3.2521 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241883409.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:54 Heat of formation + Delta-G solvation = -36.203216 kcal Electronic energy + Delta-G solvation = -21442.050878 eV Core-core repulsion = 18161.632253 eV Total energy + Delta-G solvation = -3280.418625 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.53777 -40.67061 -39.18562 -36.21423 -35.06143 -34.42356 -32.20287 -31.02329 -30.17256 -28.04215 -27.49020 -26.46309 -23.48852 -22.89096 -21.61324 -21.11985 -19.52187 -18.06309 -17.90096 -17.67643 -16.66023 -16.62112 -16.42356 -16.18790 -15.08717 -14.99619 -14.94388 -14.53625 -14.48374 -14.05894 -13.95662 -13.84783 -13.70888 -13.47097 -13.16549 -12.82022 -12.80195 -12.58859 -12.55301 -12.27040 -12.00521 -11.91455 -11.73274 -11.41909 -11.32494 -10.98133 -9.46296 -9.40292 -9.32340 -8.73638 -8.06315 -6.40754 0.41723 0.58376 0.96967 1.06006 1.38327 1.50626 1.54417 2.17196 2.59295 2.99262 3.12961 3.57818 3.82631 4.00063 4.01899 4.09914 4.40507 4.47060 4.52233 4.68904 4.71612 4.79783 4.81963 4.86844 4.90148 4.99039 5.04141 5.08679 5.22313 5.31207 5.42182 5.53269 5.54173 5.67102 5.79668 5.85671 5.97059 6.09522 6.13412 6.25440 6.55398 6.69934 6.80339 6.88138 7.09740 8.22031 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.031880 B = 0.003912 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.075815 B = 7156.154200 C = 7737.273830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.170 4.170 3 C -0.091 4.091 4 C -0.080 4.080 5 C -0.212 4.212 6 C -0.047 4.047 7 C -0.240 4.240 8 C 0.104 3.896 9 C -0.483 4.483 10 H 0.091 0.909 11 C 0.033 3.967 12 N -0.816 5.816 13 Si 0.988 3.012 14 H -0.259 1.259 15 H -0.269 1.269 16 H -0.253 1.253 17 C -0.233 4.233 18 C 0.109 3.891 19 F -0.166 7.166 20 C -0.085 4.085 21 C -0.168 4.168 22 C -0.097 4.097 23 C 0.206 3.794 24 N -0.863 5.863 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.128 0.872 30 H 0.115 0.885 31 H 0.292 0.708 32 H 0.107 0.893 33 H 0.122 0.878 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.404 0.596 38 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.915 -14.755 1.291 15.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.175 4.175 3 C -0.110 4.110 4 C -0.082 4.082 5 C -0.214 4.214 6 C -0.066 4.066 7 C -0.260 4.260 8 C 0.102 3.898 9 C -0.511 4.511 10 H 0.109 0.891 11 C -0.184 4.184 12 N -0.440 5.440 13 Si 0.808 3.192 14 H -0.183 1.183 15 H -0.193 1.193 16 H -0.177 1.177 17 C -0.254 4.254 18 C 0.090 3.910 19 F -0.145 7.145 20 C -0.103 4.103 21 C -0.172 4.172 22 C -0.154 4.154 23 C 0.100 3.900 24 N -0.406 5.406 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.146 0.854 30 H 0.133 0.867 31 H 0.103 0.897 32 H 0.125 0.875 33 H 0.140 0.860 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.235 0.765 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -4.157 -14.597 1.200 15.225 hybrid contribution -0.128 1.028 -0.489 1.145 sum -4.285 -13.570 0.711 14.248 Atomic orbital electron populations 1.20593 0.89593 1.03022 1.02338 1.19482 0.97023 0.91198 1.09811 1.20903 0.93354 0.97024 0.99670 1.18520 0.92681 0.91995 1.04961 1.18342 1.04932 0.94958 1.03176 1.20508 0.93400 0.96495 0.96159 1.20965 1.06046 0.96307 1.02639 1.17743 0.90115 0.93373 0.88605 1.19903 1.02097 0.93077 1.35983 0.89057 1.26955 0.96021 1.03478 0.91924 1.69894 1.12248 1.30533 1.31355 0.85153 0.78531 0.75589 0.79918 1.18290 1.19344 1.17653 1.20868 1.03893 0.96130 1.04476 1.17648 0.88088 0.95476 0.89826 1.91309 1.60461 1.95578 1.67108 1.20980 0.99390 0.90663 0.99292 1.19558 0.91978 0.96301 1.09395 1.20601 0.99805 0.92482 1.02519 1.17406 0.90633 0.86754 0.95165 1.42362 1.09220 1.04275 1.84764 0.91255 0.89950 0.92078 0.88661 0.85400 0.86666 0.89731 0.87479 0.86047 0.91064 0.91148 0.90359 0.76507 0.76313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.27 9.56 71.24 0.68 -1.59 16 2 C -0.17 -5.26 5.89 -19.77 -0.12 -5.38 16 3 C -0.09 -3.53 8.49 22.51 0.19 -3.34 16 4 C -0.08 -3.28 5.31 -20.01 -0.11 -3.39 16 5 C -0.21 -10.05 5.50 -19.83 -0.11 -10.16 16 6 C -0.05 -2.13 9.43 22.22 0.21 -1.92 16 7 C -0.24 -11.64 9.73 22.47 0.22 -11.42 16 8 C 0.10 5.68 5.57 -21.28 -0.12 5.56 16 9 C -0.48 -25.46 9.02 23.36 0.21 -25.25 16 10 H 0.09 4.49 7.91 -2.91 -0.02 4.47 16 11 C 0.03 1.64 5.13 85.26 0.44 2.08 16 12 N -0.82 -43.04 10.96 21.83 0.24 -42.80 16 13 Si 0.99 37.23 29.60 68.60 2.03 39.26 16 14 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 15 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 16 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 17 C -0.23 -13.06 8.60 22.50 0.19 -12.87 16 18 C 0.11 5.72 7.10 22.33 0.16 5.88 16 19 F -0.17 -8.52 15.85 44.97 0.71 -7.80 16 20 C -0.08 -2.94 9.15 22.51 0.21 -2.73 16 21 C -0.17 -4.73 5.89 -19.77 -0.12 -4.84 16 22 C -0.10 -1.87 9.56 71.24 0.68 -1.19 16 23 C 0.21 5.52 6.72 38.40 0.26 5.78 16 24 N -0.86 -14.83 8.87 -51.26 -0.45 -15.29 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.08 1.39 6.54 -2.39 -0.02 1.37 16 27 H 0.06 1.45 8.08 -2.39 -0.02 1.43 16 28 H 0.10 3.98 7.76 -2.91 -0.02 3.96 16 29 H 0.13 4.88 8.04 -2.91 -0.02 4.85 16 30 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 31 H 0.29 13.92 8.30 -92.70 -0.77 13.15 16 32 H 0.11 6.30 6.16 -2.91 -0.02 6.28 16 33 H 0.12 3.99 8.04 -2.91 -0.02 3.96 16 34 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.07 1.29 8.08 -2.39 -0.02 1.28 16 36 H 0.08 1.12 6.53 -2.39 -0.02 1.10 16 37 H 0.40 5.44 6.80 -92.71 -0.63 4.81 16 38 H 0.41 5.15 6.80 -92.71 -0.63 4.52 16 Total: -1.00 -63.88 320.65 5.25 -58.62 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: -0.15 Total: 32.79 kcal Atomic # 6 Polarization: -67.66 SS G_CDS: 2.88 Total: -64.78 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.22 Total: -58.09 kcal Atomic # 9 Polarization: -8.52 SS G_CDS: 0.71 Total: -7.80 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 2.03 Total: 39.26 kcal Total: -63.88 5.25 -58.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241883409.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.417 kcal (2) G-P(sol) polarization free energy of solvation -63.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds