Wall clock time and date at job start Tue Mar 31 2020 05:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34981 * 126.06192 * 2 1 4 4 H 0.96997 * 125.97714 * 0.02562 * 3 2 1 5 5 N 1.40075 * 108.05321 * 179.81149 * 3 2 1 6 6 C 1.31251 * 108.16166 * 0.37833 * 5 3 2 7 7 N 1.40041 * 125.97808 * 179.88635 * 6 5 3 8 8 C 1.34777 * 119.99550 * 359.69209 * 7 6 5 9 9 O 1.21628 * 120.00330 * 0.02562 * 8 7 6 10 10 C 1.47392 * 119.99401 * 179.97438 * 8 7 6 11 11 C 1.39248 * 120.29033 * 354.16559 * 10 8 7 12 12 C 1.38195 * 120.09025 * 180.29772 * 11 10 8 13 13 C 1.38841 * 120.68348 * 359.44462 * 12 11 10 14 14 C 1.37584 * 120.57244 * 0.55361 * 13 12 11 15 15 C 1.40715 * 119.87976 * 359.72867 * 14 13 12 16 16 C 1.40877 * 120.32396 * 180.02562 * 15 14 13 17 17 H 1.08008 * 119.99728 * 145.83326 * 16 15 14 18 18 C 1.40274 * 120.00454 * 325.82587 * 16 15 14 19 19 N 1.30634 * 119.99970 * 350.76355 * 18 16 15 20 20 Si 1.86800 * 120.00274 * 170.75763 * 18 16 15 21 21 H 1.48506 * 109.46979 * 90.00356 * 20 18 16 22 22 H 1.48498 * 109.47360 * 210.00187 * 20 18 16 23 23 H 1.48499 * 109.47108 * 330.00850 * 20 18 16 24 24 C 1.35226 * 126.06661 * 180.02562 * 2 1 3 25 25 C 1.50696 * 126.06972 * 359.93714 * 24 2 1 26 26 H 1.09002 * 109.46697 * 269.95545 * 1 2 3 27 27 H 1.08996 * 109.47478 * 29.95664 * 1 2 3 28 28 H 1.08995 * 109.46947 * 149.96027 * 1 2 3 29 29 H 0.96996 * 120.00342 * 179.69568 * 7 6 5 30 30 H 1.08004 * 119.94745 * 0.02562 * 11 10 8 31 31 H 1.08009 * 119.65465 * 179.70112 * 12 11 10 32 32 H 1.08000 * 119.71358 * 180.30799 * 13 12 11 33 33 H 1.07992 * 120.06168 * 179.74677 * 14 13 12 34 34 H 0.96999 * 120.00342 * 179.97438 * 19 18 16 35 35 H 1.08996 * 109.47413 * 270.00510 * 25 24 2 36 36 H 1.09007 * 109.46621 * 30.00462 * 25 24 2 37 37 H 1.09000 * 109.47112 * 149.99632 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3016 1.0912 0.0000 4 1 2.0025 2.0139 0.0004 5 7 3.6338 0.6581 0.0044 6 6 3.6373 -0.6544 -0.0013 7 7 4.7728 -1.4740 -0.0018 8 6 6.0023 -0.9220 -0.0023 9 8 6.1257 0.2880 -0.0019 10 6 7.1973 -1.7847 -0.0022 11 6 7.0667 -3.1656 0.1206 12 6 8.1903 -3.9701 0.1264 13 6 9.4578 -3.4178 -0.0010 14 6 9.6190 -2.0570 -0.1241 15 6 8.4916 -1.2149 -0.1270 16 6 8.6458 0.1797 -0.2531 17 1 7.9057 0.7589 -0.7853 18 6 9.7605 0.8162 0.3127 19 7 10.5585 0.1528 1.1062 20 14 10.1039 2.6123 -0.0685 21 1 9.4182 3.4704 0.9310 22 1 11.5671 2.8594 -0.0122 23 1 9.5992 2.9352 -1.4272 24 6 2.3032 -1.0931 -0.0005 25 6 1.8409 -2.5274 0.0002 26 1 -0.3633 -0.0008 1.0277 27 1 -0.3634 0.8903 -0.5131 28 1 -0.3633 -0.8896 -0.5144 29 1 4.6744 -2.4390 -0.0018 30 1 6.0861 -3.6080 0.2159 31 1 8.0811 -5.0399 0.2269 32 1 10.3249 -4.0616 0.0004 33 1 10.6089 -1.6358 -0.2187 34 1 11.3295 0.5927 1.4971 35 1 1.7303 -2.8730 1.0280 36 1 0.8819 -2.6002 -0.5129 37 1 2.5760 -3.1463 -0.5142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626880786.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:27 Heat of formation + Delta-G solvation = 35.899424 kcal Electronic energy + Delta-G solvation = -21714.165473 eV Core-core repulsion = 18456.793415 eV Total energy + Delta-G solvation = -3257.372058 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.37092 -40.60629 -38.60288 -36.05727 -35.40558 -33.76687 -32.57592 -31.73051 -31.02330 -28.90842 -27.40722 -26.43223 -24.83804 -23.04321 -22.16519 -21.11331 -20.12864 -19.39383 -18.50667 -17.50621 -17.19176 -16.97012 -16.44861 -15.97450 -15.70120 -15.39211 -15.01206 -14.60514 -14.52191 -14.06991 -13.83827 -13.68105 -13.54846 -13.42273 -12.91439 -12.90308 -12.89502 -12.65586 -12.52655 -12.32894 -11.94935 -11.79210 -11.54170 -11.35602 -11.17073 -10.29126 -9.64066 -9.41714 -9.25830 -9.05322 -8.71064 -6.39641 0.42540 0.98615 1.02491 1.29402 1.42810 1.46759 1.69287 1.71395 2.18348 2.48577 2.55272 2.77805 3.70357 3.77220 3.98980 4.27541 4.33423 4.38393 4.46052 4.59743 4.78996 4.84961 4.93004 5.00054 5.02515 5.09140 5.15053 5.22296 5.31011 5.32106 5.44835 5.58981 5.79727 5.89743 6.03209 6.09114 6.27672 6.34332 6.60324 6.68367 6.83428 6.92879 7.06420 7.57442 8.26321 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.017508 B = 0.005214 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.930279 B = 5368.646406 C = 6877.828951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.108 3.892 3 N -0.476 5.476 4 H 0.448 0.552 5 N -0.343 5.343 6 C 0.286 3.714 7 N -0.637 5.637 8 C 0.549 3.451 9 O -0.535 6.535 10 C -0.280 4.280 11 C -0.054 4.054 12 C -0.231 4.231 13 C -0.089 4.089 14 C -0.175 4.175 15 C 0.117 3.883 16 C -0.457 4.457 17 H 0.076 0.924 18 C 0.034 3.966 19 N -0.819 5.819 20 Si 0.977 3.023 21 H -0.274 1.274 22 H -0.251 1.251 23 H -0.266 1.266 24 C -0.278 4.278 25 C -0.067 4.067 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.425 0.575 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.124 0.876 33 H 0.102 0.898 34 H 0.290 0.710 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.361 -5.412 -1.386 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.021 4.021 3 N -0.188 5.188 4 H 0.294 0.706 5 N -0.174 5.174 6 C 0.030 3.970 7 N -0.289 5.289 8 C 0.342 3.658 9 O -0.410 6.410 10 C -0.285 4.285 11 C -0.072 4.072 12 C -0.249 4.249 13 C -0.108 4.108 14 C -0.194 4.194 15 C 0.113 3.887 16 C -0.486 4.486 17 H 0.094 0.906 18 C -0.181 4.181 19 N -0.445 5.445 20 Si 0.798 3.202 21 H -0.200 1.200 22 H -0.175 1.175 23 H -0.190 1.190 24 C -0.291 4.291 25 C -0.124 4.124 26 H 0.115 0.885 27 H 0.107 0.893 28 H 0.123 0.877 29 H 0.265 0.735 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.141 0.859 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.246 -3.530 -1.235 16.671 hybrid contribution 0.156 0.509 0.053 0.535 sum -16.090 -3.021 -1.182 16.414 Atomic orbital electron populations 1.20651 0.83183 1.05635 1.04897 1.21551 0.96431 0.85863 0.98290 1.46148 1.02774 1.09124 1.60761 0.70645 1.78010 0.97161 1.11405 1.30784 1.19669 0.88266 0.89897 0.99205 1.42952 1.02073 1.09679 1.74239 1.18812 0.83230 0.88055 0.75701 1.90750 1.85633 1.16223 1.48385 1.19662 0.92091 0.94041 1.22713 1.21085 0.99059 0.91162 0.95914 1.20832 0.91754 0.99626 1.12733 1.21222 0.97881 0.94278 0.97405 1.21292 0.97991 0.93202 1.06910 1.17822 0.90726 0.93781 0.86343 1.20097 1.05264 0.93766 1.29496 0.90605 1.26733 0.93734 1.04840 0.92770 1.69724 1.12613 1.40048 1.22151 0.85294 0.78555 0.76855 0.79451 1.19951 1.17452 1.19045 1.19940 0.88295 0.98958 1.21910 1.20117 1.01955 0.87920 1.02445 0.88466 0.89318 0.87668 0.73460 0.84737 0.84401 0.85851 0.88032 0.89885 0.91233 0.89200 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 10.21 71.24 0.73 -0.17 16 2 C 0.11 2.50 7.20 41.38 0.30 2.80 16 3 N -0.48 -13.94 7.35 -48.03 -0.35 -14.29 16 4 H 0.45 9.92 8.96 -213.34 -1.91 8.01 16 5 N -0.34 -14.70 10.92 -54.49 -0.60 -15.29 16 6 C 0.29 11.11 7.78 133.36 1.04 12.15 16 7 N -0.64 -25.40 5.39 -310.50 -1.67 -27.07 16 8 C 0.55 27.98 7.68 86.65 0.67 28.65 16 9 O -0.53 -32.00 12.31 -4.12 -0.05 -32.05 16 10 C -0.28 -14.20 5.92 -19.70 -0.12 -14.32 16 11 C -0.05 -2.17 9.52 22.50 0.21 -1.95 16 12 C -0.23 -8.89 10.03 22.40 0.22 -8.67 16 13 C -0.09 -3.86 10.01 22.26 0.22 -3.63 16 14 C -0.17 -9.12 8.62 22.72 0.20 -8.92 16 15 C 0.12 6.65 5.51 -21.10 -0.12 6.54 16 16 C -0.46 -27.51 7.67 23.41 0.18 -27.33 16 17 H 0.08 4.88 5.92 -2.91 -0.02 4.86 16 18 C 0.03 1.90 5.25 85.37 0.45 2.35 16 19 N -0.82 -44.92 11.14 21.88 0.24 -44.68 16 20 Si 0.98 43.78 29.57 68.60 2.03 45.80 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 24 C -0.28 -7.64 6.12 -20.02 -0.12 -7.76 16 25 C -0.07 -1.20 10.00 71.23 0.71 -0.49 16 26 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.10 0.75 7.14 -2.39 -0.02 0.73 16 29 H 0.43 13.29 6.28 -92.71 -0.58 12.71 16 30 H 0.13 4.12 6.44 -2.91 -0.02 4.10 16 31 H 0.14 4.14 8.06 -2.91 -0.02 4.11 16 32 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 33 H 0.10 5.52 6.59 -2.91 -0.02 5.50 16 34 H 0.29 14.33 8.29 -92.71 -0.77 13.56 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.09 1.09 7.14 -2.38 -0.02 1.07 16 37 H 0.06 1.07 7.70 -2.39 -0.02 1.05 16 Total: -1.00 -80.85 314.55 2.82 -78.04 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: -1.35 Total: 30.31 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: 4.57 Total: -20.77 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -2.38 Total: -101.33 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.05 Total: -32.05 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -80.85 2.82 -78.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626880786.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.936 kcal (2) G-P(sol) polarization free energy of solvation -80.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds