Wall clock time and date at job start Tue Mar 31 2020 06:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46850 * 2 1 4 4 C 1.50704 * 109.46835 * 240.00554 * 2 1 3 5 5 O 1.21285 * 120.00048 * 239.99712 * 4 2 1 6 6 N 1.34781 * 120.00090 * 60.27286 * 4 2 1 7 7 C 1.39931 * 119.99958 * 174.61900 * 6 4 2 8 8 C 1.39288 * 119.95150 * 325.54258 * 7 6 4 9 9 C 1.38490 * 120.43274 * 179.76163 * 8 7 6 10 10 C 1.37678 * 120.32056 * 0.51752 * 9 8 7 11 11 C 1.40742 * 119.88400 * 359.74364 * 10 9 8 12 12 C 1.41413 * 120.21075 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00217 * 25.12774 * 12 11 10 14 14 C 1.39933 * 120.00042 * 205.13210 * 12 11 10 15 15 N 1.30838 * 120.00025 * 16.78538 * 14 12 11 16 16 Si 1.86793 * 119.99997 * 196.78802 * 14 12 11 17 17 H 1.48493 * 109.47463 * 59.99700 * 16 14 12 18 18 H 1.48500 * 109.46992 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47001 * 299.99676 * 16 14 12 20 20 C 1.38244 * 119.94687 * 145.82057 * 7 6 4 21 21 N 1.46493 * 109.47817 * 120.00635 * 2 1 3 22 22 C 1.34948 * 126.03432 * 34.71060 * 21 2 1 23 23 C 1.35321 * 107.74291 * 179.84412 * 22 21 2 24 24 C 1.39858 * 107.92227 * 0.42577 * 23 22 21 25 25 N 1.30842 * 108.20438 * 359.73676 * 24 23 22 26 26 H 1.09007 * 109.46943 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46857 * 299.98971 * 1 2 3 28 28 H 1.08999 * 109.47642 * 59.99633 * 1 2 3 29 29 H 0.96996 * 119.99859 * 354.62416 * 6 4 2 30 30 H 1.08005 * 119.78575 * 0.02686 * 8 7 6 31 31 H 1.08005 * 119.83988 * 180.23841 * 9 8 7 32 32 H 1.08001 * 120.06356 * 179.76328 * 10 9 8 33 33 H 0.97000 * 120.00152 * 180.02562 * 15 14 12 34 34 H 1.07996 * 120.16235 * 359.95986 * 20 7 6 35 35 H 1.08006 * 126.12917 * 0.02562 * 22 21 2 36 36 H 1.08004 * 126.03593 * 180.16625 * 23 22 21 37 37 H 1.08004 * 125.90195 * 179.71691 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1194 6 7 1.7112 -0.2465 -2.4547 7 6 2.2678 -0.8369 -3.5947 8 6 3.5699 -1.3301 -3.5571 9 6 4.1289 -1.9207 -4.6781 10 6 3.4066 -2.0172 -5.8462 11 6 2.0917 -1.5184 -5.9008 12 6 1.3433 -1.6143 -7.0968 13 1 1.5731 -2.3854 -7.8172 14 6 0.3051 -0.7101 -7.3470 15 7 0.2291 0.4037 -6.6648 16 14 -0.9722 -1.0932 -8.6550 17 1 -1.6722 -2.3561 -8.3085 18 1 -1.9570 0.0160 -8.7251 19 1 -0.3024 -1.2437 -9.9719 20 6 1.5266 -0.9245 -4.7583 21 7 2.0185 -0.6907 1.1960 22 6 1.4374 -1.7527 1.7924 23 6 2.1969 -2.0930 2.8594 24 6 3.2736 -1.2027 2.9228 25 7 3.1678 -0.3616 1.9262 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.0943 0.4965 -2.5453 30 1 4.1458 -1.2554 -2.6465 31 1 5.1381 -2.3035 -4.6371 32 1 3.8480 -2.4752 -6.7190 33 1 -0.4908 1.0304 -6.8379 34 1 0.5183 -0.5389 -4.7897 35 1 0.5305 -2.2449 1.4733 36 1 2.0032 -2.9057 3.5439 37 1 4.0571 -1.2082 3.6662 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313471663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:04 Heat of formation + Delta-G solvation = 68.391817 kcal Electronic energy + Delta-G solvation = -21545.343782 eV Core-core repulsion = 18289.380699 eV Total energy + Delta-G solvation = -3255.963082 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.27140 -39.68053 -37.31825 -34.61236 -34.38799 -33.30281 -30.11958 -29.73821 -29.53572 -28.25609 -25.32393 -24.93177 -22.17059 -21.27667 -21.01579 -20.33113 -19.48688 -17.74927 -17.44808 -16.91881 -15.77015 -15.23061 -15.00142 -14.73287 -14.52237 -14.25533 -13.80856 -13.57857 -13.13476 -12.94745 -12.84142 -12.56693 -12.45121 -12.40993 -11.82773 -11.66183 -11.31635 -11.16458 -10.77995 -10.71131 -10.65051 -10.15001 -9.80598 -9.70670 -9.40672 -9.21969 -9.03827 -8.50446 -7.44047 -7.09730 -6.75898 -4.42686 1.89275 2.37573 2.42142 2.80500 2.92729 3.02090 3.05727 3.11478 3.24569 3.52868 3.88842 4.35774 4.57818 4.62133 4.78259 4.84975 4.97220 5.23421 5.36055 5.54970 5.61628 5.67678 5.83404 6.04403 6.22088 6.57178 6.59846 6.67248 6.79275 6.94813 6.99751 7.02198 7.19029 7.53197 7.59240 7.75177 7.86903 7.96531 8.05185 8.23999 8.44760 8.62799 8.83021 8.89125 10.13471 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.027110 B = 0.003860 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.577817 B = 7251.930309 C = 7908.358951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.127 0.873 4 C 0.493 3.507 5 O -0.505 6.505 6 N -0.658 5.658 7 C 0.143 3.857 8 C -0.226 4.226 9 C -0.085 4.085 10 C -0.226 4.226 11 C 0.121 3.879 12 C -0.463 4.463 13 H 0.078 0.922 14 C 0.077 3.923 15 N -0.800 5.800 16 Si 0.908 3.092 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.265 1.265 20 C -0.180 4.180 21 N -0.351 5.351 22 C 0.070 3.930 23 C -0.278 4.278 24 C 0.044 3.956 25 N -0.292 5.292 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.403 0.597 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.280 0.720 34 H 0.123 0.877 35 H 0.169 0.831 36 H 0.146 0.854 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.853 1.514 12.929 13.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.145 0.855 4 C 0.276 3.724 5 O -0.379 6.379 6 N -0.302 5.302 7 C 0.052 3.948 8 C -0.247 4.247 9 C -0.104 4.104 10 C -0.246 4.246 11 C 0.118 3.882 12 C -0.493 4.493 13 H 0.096 0.904 14 C -0.140 4.140 15 N -0.426 5.426 16 Si 0.733 3.267 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.190 1.190 20 C -0.201 4.201 21 N -0.133 5.133 22 C -0.076 4.076 23 C -0.307 4.307 24 C -0.143 4.143 25 N -0.112 5.112 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.238 0.762 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.141 0.859 35 H 0.186 0.814 36 H 0.163 0.837 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -3.009 2.120 12.348 12.885 hybrid contribution -1.208 -0.447 -0.302 1.323 sum -4.217 1.673 12.046 12.872 Atomic orbital electron populations 1.22175 0.90644 1.04472 1.04692 1.21131 0.96085 0.97685 0.81529 0.85496 1.20627 0.81918 0.85297 0.84542 1.90772 1.36331 1.24776 1.86032 1.43399 1.46749 1.35500 1.04594 1.17577 0.92673 0.99250 0.85314 1.20292 0.94803 1.10941 0.98701 1.20424 0.97817 0.98941 0.93210 1.21058 0.95513 1.11007 0.97023 1.17357 0.90196 0.88643 0.92046 1.19517 1.12999 1.13252 1.03563 0.90351 1.25872 0.97652 0.93633 0.96810 1.69804 1.29255 1.06392 1.37110 0.86368 0.80115 0.79074 0.81168 1.18870 1.20378 1.19002 1.21057 0.99738 1.08211 0.91095 1.48177 1.19362 1.24594 1.21149 1.22422 0.99848 0.90723 0.94643 1.21424 0.99339 1.06325 1.03657 1.23831 0.99121 0.94163 0.97144 1.77349 1.02131 1.24587 1.07167 0.90762 0.90225 0.89041 0.76236 0.88267 0.88983 0.88769 0.90964 0.85889 0.81360 0.83661 0.80172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 8.72 37.16 0.32 -1.13 16 2 C 0.14 1.85 3.74 -69.08 -0.26 1.59 16 3 H 0.13 1.46 8.14 -51.93 -0.42 1.03 16 4 C 0.49 8.70 6.95 -10.98 -0.08 8.63 16 5 O -0.51 -11.24 14.17 5.55 0.08 -11.16 16 6 N -0.66 -11.89 5.26 -9.91 -0.05 -11.94 16 7 C 0.14 3.30 6.25 -83.77 -0.52 2.78 16 8 C -0.23 -5.46 8.66 -39.10 -0.34 -5.79 16 9 C -0.09 -2.01 10.02 -39.69 -0.40 -2.41 16 10 C -0.23 -5.61 9.79 -38.84 -0.38 -5.99 16 11 C 0.12 3.16 5.57 -106.85 -0.59 2.57 16 12 C -0.46 -12.01 9.06 -37.74 -0.34 -12.36 16 13 H 0.08 1.96 7.90 -52.49 -0.41 1.55 16 14 C 0.08 1.87 5.16 -17.34 -0.09 1.78 16 15 N -0.80 -19.53 10.94 55.55 0.61 -18.92 16 16 Si 0.91 18.07 29.59 -169.99 -5.03 13.04 16 17 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 18 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 19 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 20 C -0.18 -4.46 8.60 -38.68 -0.33 -4.80 16 21 N -0.35 -5.12 3.02 -55.99 -0.17 -5.29 16 22 C 0.07 0.90 10.58 -17.22 -0.18 0.71 16 23 C -0.28 -3.37 10.80 -40.02 -0.43 -3.81 16 24 C 0.04 0.57 12.02 -17.37 -0.21 0.36 16 25 N -0.29 -4.62 12.58 30.62 0.39 -4.23 16 26 H 0.07 0.68 7.15 -51.93 -0.37 0.31 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.70 7.47 -51.93 -0.39 0.31 16 29 H 0.40 5.87 8.11 -40.82 -0.33 5.54 16 30 H 0.10 2.42 6.48 -52.48 -0.34 2.08 16 31 H 0.09 1.93 8.06 -52.48 -0.42 1.51 16 32 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 33 H 0.28 6.20 8.30 -40.82 -0.34 5.86 16 34 H 0.12 3.05 6.17 -52.49 -0.32 2.73 16 35 H 0.17 1.70 7.26 -52.48 -0.38 1.31 16 36 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 37 H 0.18 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 320.13 15.07 4.82 4.82 Total: -1.00 -32.43 320.13 -7.41 -39.84 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -4.22 Total: 11.70 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -3.83 Total: -17.87 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.77 Total: -40.38 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.43 -7.41 -39.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313471663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.230 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds