Wall clock time and date at job start Tue Mar 31 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46850 * 2 1 4 4 C 1.50704 * 109.46835 * 240.00554 * 2 1 3 5 5 O 1.21285 * 120.00048 * 239.99712 * 4 2 1 6 6 N 1.34781 * 120.00090 * 60.27286 * 4 2 1 7 7 C 1.39931 * 119.99958 * 174.61900 * 6 4 2 8 8 C 1.39288 * 119.95150 * 325.54258 * 7 6 4 9 9 C 1.38490 * 120.43274 * 179.76163 * 8 7 6 10 10 C 1.37678 * 120.32056 * 0.51752 * 9 8 7 11 11 C 1.40742 * 119.88400 * 359.74364 * 10 9 8 12 12 C 1.41413 * 120.21075 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00217 * 25.12774 * 12 11 10 14 14 C 1.39933 * 120.00042 * 205.13210 * 12 11 10 15 15 N 1.30838 * 120.00025 * 16.78538 * 14 12 11 16 16 Si 1.86793 * 119.99997 * 196.78802 * 14 12 11 17 17 H 1.48493 * 109.47463 * 59.99700 * 16 14 12 18 18 H 1.48500 * 109.46992 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47001 * 299.99676 * 16 14 12 20 20 C 1.38244 * 119.94687 * 145.82057 * 7 6 4 21 21 N 1.46493 * 109.47817 * 120.00635 * 2 1 3 22 22 C 1.34948 * 126.03432 * 34.71060 * 21 2 1 23 23 C 1.35321 * 107.74291 * 179.84412 * 22 21 2 24 24 C 1.39858 * 107.92227 * 0.42577 * 23 22 21 25 25 N 1.30842 * 108.20438 * 359.73676 * 24 23 22 26 26 H 1.09007 * 109.46943 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46857 * 299.98971 * 1 2 3 28 28 H 1.08999 * 109.47642 * 59.99633 * 1 2 3 29 29 H 0.96996 * 119.99859 * 354.62416 * 6 4 2 30 30 H 1.08005 * 119.78575 * 0.02686 * 8 7 6 31 31 H 1.08005 * 119.83988 * 180.23841 * 9 8 7 32 32 H 1.08001 * 120.06356 * 179.76328 * 10 9 8 33 33 H 0.97000 * 120.00152 * 180.02562 * 15 14 12 34 34 H 1.07996 * 120.16235 * 359.95986 * 20 7 6 35 35 H 1.08006 * 126.12917 * 0.02562 * 22 21 2 36 36 H 1.08004 * 126.03593 * 180.16625 * 23 22 21 37 37 H 1.08004 * 125.90195 * 179.71691 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1194 6 7 1.7112 -0.2465 -2.4547 7 6 2.2678 -0.8369 -3.5947 8 6 3.5699 -1.3301 -3.5571 9 6 4.1289 -1.9207 -4.6781 10 6 3.4066 -2.0172 -5.8462 11 6 2.0917 -1.5184 -5.9008 12 6 1.3433 -1.6143 -7.0968 13 1 1.5731 -2.3854 -7.8172 14 6 0.3051 -0.7101 -7.3470 15 7 0.2291 0.4037 -6.6648 16 14 -0.9722 -1.0932 -8.6550 17 1 -1.6722 -2.3561 -8.3085 18 1 -1.9570 0.0160 -8.7251 19 1 -0.3024 -1.2437 -9.9719 20 6 1.5266 -0.9245 -4.7583 21 7 2.0185 -0.6907 1.1960 22 6 1.4374 -1.7527 1.7924 23 6 2.1969 -2.0930 2.8594 24 6 3.2736 -1.2027 2.9228 25 7 3.1678 -0.3616 1.9262 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.0943 0.4965 -2.5453 30 1 4.1458 -1.2554 -2.6465 31 1 5.1381 -2.3035 -4.6371 32 1 3.8480 -2.4752 -6.7190 33 1 -0.4908 1.0304 -6.8379 34 1 0.5183 -0.5389 -4.7897 35 1 0.5305 -2.2449 1.4733 36 1 2.0032 -2.9057 3.5439 37 1 4.0571 -1.2082 3.6662 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313471663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:03 Heat of formation + Delta-G solvation = 48.378246 kcal Electronic energy + Delta-G solvation = -21546.211635 eV Core-core repulsion = 18289.380699 eV Total energy + Delta-G solvation = -3256.830936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.32784 -41.13551 -39.08018 -36.09364 -35.73729 -35.02642 -31.52582 -31.15720 -30.77908 -29.74780 -27.21189 -25.99042 -23.56361 -23.11100 -21.99542 -21.80590 -20.84016 -19.32419 -18.93498 -18.06230 -17.49402 -16.68465 -16.57996 -16.34152 -15.90879 -15.46086 -15.04356 -14.81496 -14.55822 -14.45832 -14.20362 -13.82915 -13.55363 -13.45567 -13.33103 -13.08579 -12.84432 -12.68475 -12.58854 -12.33991 -11.88266 -11.65465 -11.61534 -11.27777 -11.05864 -10.82758 -10.36694 -9.52710 -9.37069 -8.91183 -8.57816 -6.37303 0.71161 0.88546 1.00962 1.40090 1.41693 1.47765 1.52447 1.64599 1.98415 2.19315 2.22806 2.73066 3.37810 3.57142 3.69217 3.75853 3.96753 4.13194 4.39732 4.54373 4.58904 4.65408 4.70444 4.79930 4.86492 5.02888 5.06725 5.11628 5.15415 5.15888 5.33087 5.71055 5.74471 5.79779 5.98039 6.04825 6.05443 6.29224 6.49644 6.66790 6.76139 6.91592 6.93421 7.13400 8.33146 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.027110 B = 0.003860 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.577817 B = 7251.930309 C = 7908.358951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.151 3.849 3 H 0.143 0.857 4 C 0.493 3.507 5 O -0.554 6.554 6 N -0.650 5.650 7 C 0.151 3.849 8 C -0.244 4.244 9 C -0.085 4.085 10 C -0.248 4.248 11 C 0.094 3.906 12 C -0.498 4.498 13 H 0.076 0.924 14 C 0.041 3.959 15 N -0.818 5.818 16 Si 0.981 3.019 17 H -0.263 1.263 18 H -0.264 1.264 19 H -0.263 1.263 20 C -0.197 4.197 21 N -0.365 5.365 22 C 0.058 3.942 23 C -0.282 4.282 24 C 0.040 3.960 25 N -0.338 5.338 26 H 0.073 0.927 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.420 0.580 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.291 0.709 34 H 0.120 0.880 35 H 0.192 0.808 36 H 0.172 0.828 37 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.615 1.926 13.639 14.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.044 3.956 3 H 0.160 0.840 4 C 0.280 3.720 5 O -0.431 6.431 6 N -0.296 5.296 7 C 0.058 3.942 8 C -0.265 4.265 9 C -0.104 4.104 10 C -0.268 4.268 11 C 0.091 3.909 12 C -0.527 4.527 13 H 0.094 0.906 14 C -0.175 4.175 15 N -0.444 5.444 16 Si 0.802 3.198 17 H -0.187 1.187 18 H -0.188 1.188 19 H -0.188 1.188 20 C -0.218 4.218 21 N -0.147 5.147 22 C -0.087 4.087 23 C -0.311 4.311 24 C -0.146 4.146 25 N -0.159 5.159 26 H 0.092 0.908 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.258 0.742 30 H 0.111 0.889 31 H 0.133 0.867 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.138 0.862 35 H 0.209 0.791 36 H 0.190 0.810 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -4.782 2.567 13.088 14.169 hybrid contribution -0.605 -0.580 -0.444 0.949 sum -5.387 1.986 12.644 13.887 Atomic orbital electron populations 1.22234 0.87277 1.05109 1.06649 1.21239 0.98409 0.97179 0.78742 0.83995 1.21553 0.80512 0.84600 0.85382 1.90743 1.38431 1.27134 1.86775 1.43331 1.46824 1.35719 1.03733 1.17604 0.92199 0.97987 0.86375 1.20402 0.95500 1.12051 0.98588 1.20696 0.98788 0.98197 0.92707 1.21211 0.95613 1.12122 0.97837 1.17766 0.90977 0.89251 0.92925 1.19777 1.14770 1.14277 1.03918 0.90618 1.26666 0.98837 0.92960 0.98991 1.69825 1.29852 1.06788 1.37895 0.85267 0.77341 0.79124 0.78072 1.18728 1.18810 1.18784 1.21026 0.99827 1.09401 0.91555 1.48351 1.19467 1.25467 1.21452 1.22986 1.00701 0.90324 0.94704 1.21850 0.98728 1.06634 1.03867 1.24440 0.99819 0.93461 0.96837 1.77284 1.03469 1.26497 1.08675 0.90790 0.87879 0.87425 0.74177 0.88916 0.86705 0.88062 0.89856 0.86180 0.79061 0.81036 0.77424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.72 71.98 0.63 -1.74 16 2 C 0.15 3.69 3.74 44.25 0.17 3.85 16 3 H 0.14 3.03 8.14 -2.39 -0.02 3.01 16 4 C 0.49 17.23 6.95 87.66 0.61 17.84 16 5 O -0.55 -24.91 14.17 -3.05 -0.04 -24.96 16 6 N -0.65 -23.26 5.26 -303.65 -1.60 -24.85 16 7 C 0.15 7.07 6.25 38.10 0.24 7.30 16 8 C -0.24 -12.00 8.66 22.58 0.20 -11.80 16 9 C -0.09 -4.10 10.02 22.20 0.22 -3.88 16 10 C -0.25 -12.61 9.79 22.75 0.22 -12.39 16 11 C 0.09 5.04 5.57 -21.30 -0.12 4.92 16 12 C -0.50 -26.25 9.06 23.46 0.21 -26.03 16 13 H 0.08 3.87 7.90 -2.91 -0.02 3.85 16 14 C 0.04 1.97 5.16 85.25 0.44 2.41 16 15 N -0.82 -39.57 10.94 21.82 0.24 -39.33 16 16 Si 0.98 36.29 29.59 68.60 2.03 38.32 16 17 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 18 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 19 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 20 C -0.20 -9.94 8.60 22.85 0.20 -9.74 16 21 N -0.37 -10.21 3.02 -331.06 -1.00 -11.21 16 22 C 0.06 1.39 10.58 83.54 0.88 2.28 16 23 C -0.28 -6.30 10.80 21.99 0.24 -6.06 16 24 C 0.04 1.00 12.02 85.23 1.02 2.02 16 25 N -0.34 -10.46 12.58 -57.03 -0.72 -11.18 16 26 H 0.07 1.16 7.15 -2.38 -0.02 1.15 16 27 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.11 1.31 7.47 -2.39 -0.02 1.29 16 29 H 0.42 11.80 8.11 -92.71 -0.75 11.05 16 30 H 0.09 4.64 6.48 -2.91 -0.02 4.62 16 31 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 32 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 33 H 0.29 12.54 8.30 -92.71 -0.77 11.77 16 34 H 0.12 6.03 6.17 -2.91 -0.02 6.01 16 35 H 0.19 3.43 7.26 -2.91 -0.02 3.41 16 36 H 0.17 2.75 8.06 -2.91 -0.02 2.72 16 37 H 0.21 3.54 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -71.66 320.13 4.42 -67.23 By element: Atomic # 1 Polarization: 36.64 SS G_CDS: 0.35 Total: 36.99 kcal Atomic # 6 Polarization: -36.18 SS G_CDS: 5.16 Total: -31.02 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -3.08 Total: -86.57 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.04 Total: -24.96 kcal Atomic # 14 Polarization: 36.29 SS G_CDS: 2.03 Total: 38.32 kcal Total: -71.66 4.42 -67.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313471663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.613 kcal (2) G-P(sol) polarization free energy of solvation -71.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds