Wall clock time and date at job start Tue Mar 31 2020 06:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.43190 * 179.97438 * 2 1 4 4 C 1.39731 * 119.59202 * 342.98106 * 3 2 1 5 5 C 1.37970 * 119.20157 * 180.02562 * 4 3 2 6 6 C 1.40241 * 118.40194 * 359.97438 * 5 4 3 7 7 C 1.47675 * 120.44237 * 180.02562 * 6 5 4 8 8 O 1.21581 * 119.99601 * 22.00018 * 7 6 5 9 9 N 1.34770 * 120.00215 * 202.00176 * 7 6 5 10 10 C 1.46507 * 120.00123 * 4.86841 * 9 7 6 11 11 C 1.46504 * 120.00483 * 184.87118 * 9 7 6 12 12 C 1.53492 * 114.20792 * 240.00110 * 11 9 7 13 13 N 1.47060 * 87.98518 * 220.14352 * 12 11 9 14 14 C 1.36938 * 136.05779 * 207.08618 * 13 12 11 15 15 H 1.07991 * 120.00304 * 6.94438 * 14 13 12 16 16 C 1.38813 * 119.99620 * 186.94908 * 14 13 12 17 17 N 1.31618 * 120.00673 * 6.67963 * 16 14 13 18 18 Si 1.86810 * 119.99578 * 186.68289 * 16 14 13 19 19 H 1.48501 * 109.46873 * 265.01070 * 18 16 14 20 20 H 1.48496 * 109.47149 * 25.01394 * 18 16 14 21 21 H 1.48499 * 109.46828 * 145.01811 * 18 16 14 22 22 C 1.47063 * 87.88563 * 27.34200 * 13 12 11 23 23 C 1.39652 * 119.11508 * 0.27635 * 6 5 4 24 24 N 1.31486 * 120.71490 * 359.40548 * 23 6 5 25 25 H 4.51261 * 14.17656 * 0.02562 * 4 2 1 26 26 H 1.07996 * 120.39671 * 0.02562 * 4 3 2 27 27 H 1.07999 * 120.80255 * 180.02562 * 5 4 3 28 28 H 1.08993 * 109.47039 * 264.27497 * 10 9 7 29 29 H 1.09007 * 109.46758 * 24.27112 * 10 9 7 30 30 H 1.08994 * 109.47186 * 144.26287 * 10 9 7 31 31 H 1.09007 * 113.27512 * 13.06497 * 11 9 7 32 32 H 1.09001 * 113.46816 * 105.36260 * 12 11 9 33 33 H 1.09000 * 113.46640 * 334.92824 * 12 11 9 34 34 H 0.96996 * 120.00634 * 179.97438 * 17 16 14 35 35 H 1.09001 * 113.47249 * 87.43623 * 22 13 12 36 36 H 1.09004 * 113.46967 * 217.87657 * 22 13 12 37 37 H 1.08003 * 119.64314 * 179.70307 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.2965 -1.1609 0.3556 5 6 4.6761 -1.1511 0.3534 6 6 5.3343 0.0331 -0.0090 7 6 6.8097 0.0936 -0.0273 8 8 7.4588 -0.9296 -0.1266 9 7 7.4365 1.2830 0.0659 10 6 6.6600 2.5045 0.2925 11 6 8.8944 1.3546 -0.0593 12 6 9.6049 1.9268 1.1751 13 7 10.4990 2.6520 0.2601 14 6 11.7806 3.1320 0.3082 15 1 12.4124 2.9010 1.1530 16 6 12.2675 3.9157 -0.7289 17 7 11.4612 4.3070 -1.6928 18 14 14.0674 4.4151 -0.7566 19 1 14.2177 5.7590 -0.1429 20 1 14.8669 3.4276 0.0120 21 1 14.5482 4.4558 -2.1610 22 6 9.4090 2.6404 -0.7271 23 6 4.5758 1.1558 -0.3472 24 7 3.2619 1.1059 -0.3392 25 1 -1.0500 -0.0011 -0.0002 26 1 2.7567 -2.0555 0.6289 27 1 5.2359 -2.0344 0.6234 28 1 6.4609 2.9908 -0.6624 29 1 5.7160 2.2507 0.7749 30 1 7.2253 3.1807 0.9338 31 1 9.3391 0.4375 -0.4459 32 1 10.1149 1.1706 1.7719 33 1 8.9730 2.5821 1.7747 34 1 11.8013 4.8549 -2.4173 35 1 8.7255 3.4838 -0.6291 36 1 9.7522 2.4921 -1.7510 37 1 5.0738 2.0736 -0.6230 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044206213.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:37 Heat of formation + Delta-G solvation = 151.903427 kcal Electronic energy + Delta-G solvation = -21264.064530 eV Core-core repulsion = 18011.722783 eV Total energy + Delta-G solvation = -3252.341747 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.01420 -39.43772 -37.75503 -35.07038 -34.04167 -32.77623 -32.17818 -30.88482 -27.86122 -27.20099 -25.40397 -24.69048 -23.75678 -23.11334 -20.51069 -19.72255 -18.83344 -17.72166 -16.92080 -16.76473 -16.27463 -15.88945 -15.43121 -14.85476 -14.65671 -14.33960 -14.00272 -13.87544 -13.50783 -13.22805 -12.87004 -12.55119 -12.05231 -11.79407 -11.59942 -11.40233 -11.34482 -11.21169 -11.01114 -10.79799 -10.32243 -10.19757 -10.16929 -10.04473 -9.58088 -9.52191 -9.07791 -8.85093 -8.24934 -6.98427 -5.86784 -3.18416 0.11692 0.92826 2.27868 2.30945 3.01017 3.09768 3.36266 3.41632 3.43843 3.56582 3.73421 4.31572 4.37984 4.43818 4.58488 4.73931 4.82186 5.06348 5.21460 5.24278 5.29295 5.41498 5.45804 5.57284 5.73078 5.74092 5.75683 5.98593 6.07062 6.22473 6.39136 6.50548 6.65010 7.05903 7.06872 7.20901 7.41019 7.50505 7.57051 7.87685 8.22714 8.95097 9.61433 10.52852 11.32039 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.044896 B = 0.003088 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.518174 B = 9066.113097 C = 9429.692559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.148 4.148 3 C 0.239 3.761 4 C -0.155 4.155 5 C -0.017 4.017 6 C -0.174 4.174 7 C 0.558 3.442 8 O -0.536 6.536 9 N -0.587 5.587 10 C 0.056 3.944 11 C 0.085 3.915 12 C 0.106 3.894 13 N -0.602 5.602 14 C -0.220 4.220 15 H 0.084 0.916 16 C -0.005 4.005 17 N -0.918 5.918 18 Si 0.915 3.085 19 H -0.288 1.288 20 H -0.279 1.279 21 H -0.289 1.289 22 C 0.156 3.844 23 C 0.118 3.882 24 N -0.473 5.473 25 H 0.230 0.770 26 H 0.145 0.855 27 H 0.152 0.848 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.045 0.955 33 H 0.034 0.966 34 H 0.255 0.745 35 H 0.036 0.964 36 H 0.065 0.935 37 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.943 -7.931 4.049 21.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.149 4.149 3 C 0.104 3.896 4 C -0.174 4.174 5 C -0.043 4.043 6 C -0.179 4.179 7 C 0.345 3.655 8 O -0.414 6.414 9 N -0.318 5.318 10 C -0.087 4.087 11 C -0.018 4.018 12 C -0.022 4.022 13 N -0.328 5.328 14 C -0.347 4.347 15 H 0.102 0.898 16 C -0.202 4.202 17 N -0.564 5.564 18 Si 0.745 3.255 19 H -0.215 1.215 20 H -0.204 1.204 21 H -0.215 1.215 22 C 0.029 3.971 23 C -0.041 4.041 24 N -0.181 5.181 25 H 0.247 0.753 26 H 0.163 0.837 27 H 0.170 0.830 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.139 0.861 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -19.687 -7.522 3.641 21.387 hybrid contribution 1.138 -0.147 0.204 1.165 sum -18.549 -7.668 3.845 20.437 Atomic orbital electron populations 1.24953 0.95629 0.98153 0.96889 1.19319 0.91065 1.01904 1.02594 1.16789 0.88166 0.89849 0.94817 1.21991 0.94386 0.99020 1.02051 1.21662 0.93533 0.97392 0.91728 1.21221 0.95270 0.96153 1.05253 1.18010 0.86291 0.83855 0.77335 1.90783 1.66872 1.33507 1.50197 1.47805 1.08229 1.06207 1.69569 1.22507 0.96595 0.87735 1.01871 1.23898 0.75852 1.01741 1.00329 1.22812 0.91645 0.94233 0.93478 1.45339 1.08959 1.66372 1.12104 1.18917 0.84865 1.25633 1.05324 0.89824 1.24857 0.98496 0.99061 0.97832 1.69838 1.33809 1.39620 1.13143 0.86060 0.84014 0.78351 0.77084 1.21516 1.20393 1.21488 1.22404 0.88146 0.90588 0.95953 1.24236 0.88605 0.98578 0.92638 1.67884 1.09796 1.26694 1.13719 0.75313 0.83729 0.83015 0.91158 0.90134 0.89851 0.86090 0.93685 0.94807 0.93467 0.94590 0.91656 0.79222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 19.25 29.55 0.57 -0.43 16 2 C -0.15 -1.51 13.43 -38.84 -0.52 -2.03 16 3 C 0.24 2.74 6.59 -84.91 -0.56 2.18 16 4 C -0.15 -1.50 9.77 -39.12 -0.38 -1.89 16 5 C -0.02 -0.19 9.70 -38.93 -0.38 -0.57 16 6 C -0.17 -2.22 5.59 -104.76 -0.59 -2.81 16 7 C 0.56 8.79 7.53 -12.41 -0.09 8.70 16 8 O -0.54 -10.15 16.15 5.29 0.09 -10.06 16 9 N -0.59 -9.16 3.12 -174.73 -0.54 -9.71 16 10 C 0.06 0.67 7.23 59.85 0.43 1.11 16 11 C 0.09 1.64 4.55 -67.68 -0.31 1.33 16 12 C 0.11 2.17 8.26 -8.52 -0.07 2.10 16 13 N -0.60 -15.27 3.76 -184.66 -0.69 -15.96 16 14 C -0.22 -6.12 10.73 -15.06 -0.16 -6.28 16 15 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 16 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 17 N -0.92 -26.83 11.83 55.49 0.66 -26.18 16 18 Si 0.92 21.87 29.56 -169.99 -5.02 16.84 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 C 0.16 3.53 6.67 -8.38 -0.06 3.47 16 23 C 0.12 1.39 8.74 -17.17 -0.15 1.24 16 24 N -0.47 -5.96 10.26 -10.79 -0.11 -6.07 16 25 H 0.23 0.64 7.80 -54.09 -0.42 0.22 16 26 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 27 H 0.15 1.52 7.87 -52.49 -0.41 1.11 16 28 H 0.07 0.77 7.20 -51.93 -0.37 0.39 16 29 H 0.08 0.81 4.93 -51.92 -0.26 0.56 16 30 H 0.08 1.07 6.44 -51.93 -0.33 0.73 16 31 H 0.12 2.52 7.33 -51.93 -0.38 2.14 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.03 0.66 6.90 -51.93 -0.36 0.30 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.04 0.80 6.69 -51.93 -0.35 0.45 16 36 H 0.07 1.65 7.60 -51.93 -0.39 1.26 16 37 H 0.19 1.95 4.14 -52.48 -0.22 1.73 16 LS Contribution 318.81 15.07 4.80 4.80 Total: -1.00 -33.79 318.81 -7.08 -40.87 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -3.89 Total: -0.42 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -2.36 Total: 5.89 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.69 Total: -57.92 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.79 -7.08 -40.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044206213.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.769 kcal (2) G-P(sol) polarization free energy of solvation -33.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds