Wall clock time and date at job start Tue Mar 31 2020 06:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47566 * 2 1 4 4 O 1.42900 * 109.47239 * 239.99626 * 2 1 3 5 5 C 1.35526 * 117.00209 * 269.99981 * 4 2 1 6 6 N 1.32150 * 119.79482 * 359.72914 * 5 4 2 7 7 C 1.31963 * 121.79891 * 179.74962 * 6 5 4 8 8 C 1.38355 * 121.17701 * 0.52732 * 7 6 5 9 9 C 1.38373 * 119.46090 * 359.74347 * 8 7 6 10 10 C 1.39944 * 118.34806 * 359.97438 * 9 8 7 11 11 C 1.47768 * 120.59342 * 179.97438 * 10 9 8 12 12 C 1.40522 * 120.79955 * 129.74874 * 11 10 9 13 13 N 1.31558 * 119.08637 * 179.73336 * 12 11 10 14 14 C 1.33669 * 120.83513 * 0.52291 * 13 12 11 15 15 C 1.41011 * 119.12321 * 179.72576 * 14 13 12 16 16 H 1.07997 * 119.99986 * 173.63842 * 15 14 13 17 17 C 1.40127 * 120.00015 * 353.63874 * 15 14 13 18 18 N 1.30672 * 119.99966 * 6.33935 * 17 15 14 19 19 Si 1.86793 * 119.99995 * 186.34451 * 17 15 14 20 20 H 1.48498 * 109.47308 * 94.98199 * 19 17 15 21 21 H 1.48503 * 109.47323 * 214.98372 * 19 17 15 22 22 H 1.48500 * 109.47210 * 334.98062 * 19 17 15 23 23 N 1.33668 * 121.75312 * 359.74755 * 14 13 12 24 24 C 1.31558 * 120.83546 * 359.97438 * 23 14 13 25 25 H 1.08999 * 109.47116 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46954 * 300.00542 * 1 2 3 27 27 H 1.09007 * 109.46906 * 59.99980 * 1 2 3 28 28 H 1.09002 * 109.46986 * 119.99546 * 2 1 3 29 29 H 1.09007 * 109.47030 * 59.99567 * 3 2 1 30 30 H 1.08993 * 109.47952 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47189 * 300.00233 * 3 2 1 32 32 H 1.07995 * 119.41336 * 180.26822 * 7 6 5 33 33 H 1.07999 * 120.27260 * 179.76197 * 8 7 6 34 34 H 1.08002 * 120.82792 * 180.02562 * 9 8 7 35 35 H 1.08004 * 120.45405 * 359.97438 * 12 11 10 36 36 H 0.96998 * 120.00266 * 180.02562 * 18 17 15 37 37 H 1.08004 * 120.45651 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2115 -2.0095 -1.0653 6 7 1.9753 -2.6250 0.0801 7 6 2.1568 -3.9244 0.2215 8 6 2.6154 -4.7019 -0.8271 9 6 2.8838 -4.1083 -2.0478 10 6 2.6783 -2.7299 -2.1759 11 6 2.9496 -2.0450 -3.4569 12 6 1.9916 -1.1952 -4.0354 13 7 2.2706 -0.5984 -5.1741 14 6 3.4426 -0.8002 -5.7843 15 6 3.7015 -0.1465 -7.0066 16 1 4.6792 -0.2166 -7.4600 17 6 2.6902 0.5942 -7.6330 18 7 1.5479 0.7828 -7.0273 19 14 2.9752 1.3118 -9.3339 20 1 2.4401 0.3811 -10.3598 21 1 2.2807 2.6200 -9.4420 22 1 4.4313 1.5050 -9.5521 23 7 4.3756 -1.6055 -5.2669 24 6 4.1696 -2.2320 -4.1286 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.9476 -4.3886 1.1739 33 1 2.7623 -5.7635 -0.6940 34 1 3.2422 -4.6942 -2.8813 35 1 1.0408 -1.0313 -3.5499 36 1 0.8477 1.2952 -7.4609 37 1 4.9275 -2.8817 -3.7162 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236101708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:18 Heat of formation + Delta-G solvation = 35.456010 kcal Electronic energy + Delta-G solvation = -21838.013706 eV Core-core repulsion = 18580.622420 eV Total energy + Delta-G solvation = -3257.391286 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.28739 -38.71805 -37.78667 -34.10641 -33.10089 -32.59212 -31.80270 -30.62626 -28.89048 -27.11938 -26.18893 -23.79972 -22.98358 -22.39147 -21.18346 -20.67254 -18.10051 -17.91739 -16.48590 -16.01554 -15.53642 -15.28688 -14.97927 -14.53200 -14.38593 -14.14254 -13.55202 -13.03843 -12.89604 -12.78687 -12.65307 -12.24262 -12.14169 -11.98162 -11.89023 -11.73360 -11.35497 -11.33725 -10.79092 -10.73031 -10.53575 -10.33708 -9.77429 -9.53817 -9.41397 -9.12997 -8.98150 -8.39057 -7.57623 -7.23881 -6.61640 -4.77559 1.41365 1.66389 2.58778 2.98156 3.00985 3.06009 3.07619 3.41989 3.81721 4.16351 4.57208 4.61443 5.03865 5.15328 5.21677 5.35661 5.40810 5.49777 5.52149 5.65653 5.74544 5.85695 5.88797 5.94208 5.96180 5.99692 6.13860 6.25080 6.31468 6.32843 6.39773 6.56571 6.86229 6.88874 6.98975 7.29282 7.58727 7.75661 8.08574 8.24018 8.42730 8.49829 9.05954 10.03031 10.22335 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.019457 B = 0.004850 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.729472 B = 5771.897711 C = 6785.187463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.081 3.919 3 C -0.150 4.150 4 O -0.285 6.285 5 C 0.312 3.688 6 N -0.540 5.540 7 C 0.104 3.896 8 C -0.205 4.205 9 C -0.062 4.062 10 C -0.038 4.038 11 C -0.320 4.320 12 C 0.198 3.802 13 N -0.509 5.509 14 C 0.384 3.616 15 C -0.386 4.386 16 H 0.095 0.905 17 C 0.063 3.937 18 N -0.700 5.700 19 Si 0.920 3.080 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.258 1.258 23 N -0.594 5.594 24 C 0.186 3.814 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.149 0.851 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.277 0.723 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.990 -3.545 10.841 11.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.025 3.975 3 C -0.208 4.208 4 O -0.192 6.192 5 C 0.132 3.868 6 N -0.264 5.264 7 C -0.051 4.051 8 C -0.226 4.226 9 C -0.087 4.087 10 C -0.042 4.042 11 C -0.331 4.331 12 C 0.021 3.979 13 N -0.225 5.225 14 C 0.151 3.849 15 C -0.419 4.419 16 H 0.113 0.887 17 C -0.165 4.165 18 N -0.320 5.320 19 Si 0.744 3.256 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.181 1.181 23 N -0.313 5.313 24 C 0.012 3.988 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.166 0.834 33 H 0.146 0.854 34 H 0.152 0.848 35 H 0.144 0.856 36 H 0.089 0.911 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.265 -2.165 10.271 10.738 hybrid contribution 0.012 -0.783 -0.153 0.798 sum -2.253 -2.949 10.118 10.777 Atomic orbital electron populations 1.22202 0.95325 1.02591 1.02315 1.22237 0.94110 0.92775 0.88409 1.21884 1.01920 0.94273 1.02676 1.86423 1.79720 1.15786 1.37228 1.20049 0.93163 0.84566 0.89018 1.67102 1.21914 1.12582 1.24808 1.22163 0.96371 0.87995 0.98556 1.21790 1.05353 1.01001 0.94453 1.21562 0.96933 0.92874 0.97365 1.18729 1.00696 0.92198 0.92578 1.19438 1.00949 1.13627 0.99062 1.22931 0.96056 0.87874 0.91016 1.69356 1.20807 1.23895 1.08407 1.19938 0.83694 0.88400 0.92901 1.19416 0.98732 1.22501 1.01273 0.88705 1.26190 0.94595 0.95498 1.00252 1.70140 1.02814 1.23697 1.35386 0.86095 0.80138 0.78663 0.80753 1.19204 1.19856 1.18137 1.68640 1.35068 1.14318 1.13242 1.22595 0.92913 0.93349 0.89981 0.92197 0.91640 0.91839 0.89834 0.91027 0.92016 0.91440 0.83418 0.85400 0.84785 0.85609 0.91120 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 9.53 37.16 0.35 -1.86 16 2 C 0.08 1.21 3.11 -26.73 -0.08 1.13 16 3 C -0.15 -1.97 9.56 37.16 0.36 -1.62 16 4 O -0.28 -5.35 8.25 -18.27 -0.15 -5.51 16 5 C 0.31 5.75 7.41 -16.61 -0.12 5.63 16 6 N -0.54 -8.81 8.64 -12.94 -0.11 -8.92 16 7 C 0.10 1.42 11.17 -17.45 -0.19 1.22 16 8 C -0.21 -2.70 10.09 -39.49 -0.40 -3.10 16 9 C -0.06 -0.97 9.71 -38.89 -0.38 -1.35 16 10 C -0.04 -0.71 5.54 -104.56 -0.58 -1.29 16 11 C -0.32 -7.16 5.33 -104.28 -0.56 -7.72 16 12 C 0.20 4.87 10.14 -16.81 -0.17 4.70 16 13 N -0.51 -14.11 7.85 -12.40 -0.10 -14.21 16 14 C 0.38 10.81 7.34 -158.16 -1.16 9.65 16 15 C -0.39 -10.43 9.34 -37.82 -0.35 -10.78 16 16 H 0.09 2.46 7.86 -52.49 -0.41 2.04 16 17 C 0.06 1.56 5.49 -17.34 -0.10 1.47 16 18 N -0.70 -18.14 11.43 55.56 0.63 -17.50 16 19 Si 0.92 18.12 29.56 -169.99 -5.03 13.09 16 20 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 23 N -0.59 -15.70 10.33 -12.40 -0.13 -15.83 16 24 C 0.19 4.28 10.87 -16.81 -0.18 4.10 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 28 H 0.08 1.23 6.98 -51.93 -0.36 0.86 16 29 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.13 1.93 8.06 -52.49 -0.42 1.50 16 35 H 0.13 2.92 7.80 -52.48 -0.41 2.51 16 36 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 37 H 0.13 2.49 8.06 -52.48 -0.42 2.07 16 LS Contribution 324.05 15.07 4.88 4.88 Total: -1.00 -30.51 324.05 -8.11 -38.62 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -4.55 Total: 5.19 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -3.57 Total: 0.18 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.30 Total: -56.46 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.15 Total: -5.51 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.51 -8.11 -38.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236101708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.073 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds