Wall clock time and date at job start Tue Mar 31 2020 06:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47566 * 2 1 4 4 O 1.42900 * 109.47239 * 239.99626 * 2 1 3 5 5 C 1.35526 * 117.00209 * 269.99981 * 4 2 1 6 6 N 1.32150 * 119.79482 * 359.72914 * 5 4 2 7 7 C 1.31963 * 121.79891 * 179.74962 * 6 5 4 8 8 C 1.38355 * 121.17701 * 0.52732 * 7 6 5 9 9 C 1.38373 * 119.46090 * 359.74347 * 8 7 6 10 10 C 1.39944 * 118.34806 * 359.97438 * 9 8 7 11 11 C 1.47768 * 120.59342 * 179.97438 * 10 9 8 12 12 C 1.40522 * 120.79955 * 129.74874 * 11 10 9 13 13 N 1.31558 * 119.08637 * 179.73336 * 12 11 10 14 14 C 1.33669 * 120.83513 * 0.52291 * 13 12 11 15 15 C 1.41011 * 119.12321 * 179.72576 * 14 13 12 16 16 H 1.07997 * 119.99986 * 173.63842 * 15 14 13 17 17 C 1.40127 * 120.00015 * 353.63874 * 15 14 13 18 18 N 1.30672 * 119.99966 * 6.33935 * 17 15 14 19 19 Si 1.86793 * 119.99995 * 186.34451 * 17 15 14 20 20 H 1.48498 * 109.47308 * 94.98199 * 19 17 15 21 21 H 1.48503 * 109.47323 * 214.98372 * 19 17 15 22 22 H 1.48500 * 109.47210 * 334.98062 * 19 17 15 23 23 N 1.33668 * 121.75312 * 359.74755 * 14 13 12 24 24 C 1.31558 * 120.83546 * 359.97438 * 23 14 13 25 25 H 1.08999 * 109.47116 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46954 * 300.00542 * 1 2 3 27 27 H 1.09007 * 109.46906 * 59.99980 * 1 2 3 28 28 H 1.09002 * 109.46986 * 119.99546 * 2 1 3 29 29 H 1.09007 * 109.47030 * 59.99567 * 3 2 1 30 30 H 1.08993 * 109.47952 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47189 * 300.00233 * 3 2 1 32 32 H 1.07995 * 119.41336 * 180.26822 * 7 6 5 33 33 H 1.07999 * 120.27260 * 179.76197 * 8 7 6 34 34 H 1.08002 * 120.82792 * 180.02562 * 9 8 7 35 35 H 1.08004 * 120.45405 * 359.97438 * 12 11 10 36 36 H 0.96998 * 120.00266 * 180.02562 * 18 17 15 37 37 H 1.08004 * 120.45651 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2115 -2.0095 -1.0653 6 7 1.9753 -2.6250 0.0801 7 6 2.1568 -3.9244 0.2215 8 6 2.6154 -4.7019 -0.8271 9 6 2.8838 -4.1083 -2.0478 10 6 2.6783 -2.7299 -2.1759 11 6 2.9496 -2.0450 -3.4569 12 6 1.9916 -1.1952 -4.0354 13 7 2.2706 -0.5984 -5.1741 14 6 3.4426 -0.8002 -5.7843 15 6 3.7015 -0.1465 -7.0066 16 1 4.6792 -0.2166 -7.4600 17 6 2.6902 0.5942 -7.6330 18 7 1.5479 0.7828 -7.0273 19 14 2.9752 1.3118 -9.3339 20 1 2.4401 0.3811 -10.3598 21 1 2.2807 2.6200 -9.4420 22 1 4.4313 1.5050 -9.5521 23 7 4.3756 -1.6055 -5.2669 24 6 4.1696 -2.2320 -4.1286 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.9476 -4.3886 1.1739 33 1 2.7623 -5.7635 -0.6940 34 1 3.2422 -4.6942 -2.8813 35 1 1.0408 -1.0313 -3.5499 36 1 0.8477 1.2952 -7.4609 37 1 4.9275 -2.8817 -3.7162 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236101708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:18 Heat of formation + Delta-G solvation = 16.087101 kcal Electronic energy + Delta-G solvation = -21838.853605 eV Core-core repulsion = 18580.622420 eV Total energy + Delta-G solvation = -3258.231185 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.62408 -40.56009 -39.04057 -35.90590 -34.46256 -33.94020 -33.74191 -32.04482 -30.48343 -28.20700 -27.92220 -25.25847 -24.55521 -24.06910 -22.73545 -21.94239 -19.81501 -19.34488 -18.07054 -17.57390 -16.94696 -16.85012 -16.49914 -16.11702 -15.70867 -15.35329 -14.88478 -14.71403 -14.51498 -14.22431 -13.93062 -13.88355 -13.26363 -13.20765 -13.11452 -13.09825 -12.94586 -12.83294 -12.67967 -11.95939 -11.87575 -11.69899 -11.42570 -11.21827 -11.15015 -10.85818 -10.43049 -9.89773 -9.38575 -8.93017 -8.46978 -6.74023 0.05718 0.44415 0.85311 1.05942 1.39286 1.51213 1.56253 2.18509 2.20415 2.69340 2.95213 3.44644 3.84120 3.92130 3.96068 4.01661 4.04267 4.11416 4.13999 4.23935 4.28781 4.38362 4.46989 4.65990 4.79209 4.81890 4.84253 4.91602 4.96743 5.08734 5.16939 5.23818 5.25520 5.32432 5.49875 5.68337 5.77981 6.10728 6.48769 6.50519 6.57249 7.00342 7.14247 8.17607 8.32092 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.019457 B = 0.004850 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.729472 B = 5771.897711 C = 6785.187463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.075 3.925 3 C -0.146 4.146 4 O -0.316 6.316 5 C 0.300 3.700 6 N -0.548 5.548 7 C 0.116 3.884 8 C -0.193 4.193 9 C -0.054 4.054 10 C -0.083 4.083 11 C -0.294 4.294 12 C 0.178 3.822 13 N -0.540 5.540 14 C 0.356 3.644 15 C -0.427 4.427 16 H 0.093 0.907 17 C 0.022 3.978 18 N -0.741 5.741 19 Si 1.003 2.997 20 H -0.260 1.260 21 H -0.261 1.261 22 H -0.254 1.254 23 N -0.617 5.617 24 C 0.173 3.827 25 H 0.049 0.951 26 H 0.095 0.905 27 H 0.049 0.951 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.192 0.808 33 H 0.172 0.828 34 H 0.146 0.854 35 H 0.129 0.871 36 H 0.286 0.714 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.101 -5.102 12.701 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.019 3.981 3 C -0.203 4.203 4 O -0.224 6.224 5 C 0.121 3.879 6 N -0.272 5.272 7 C -0.040 4.040 8 C -0.213 4.213 9 C -0.079 4.079 10 C -0.088 4.088 11 C -0.304 4.304 12 C 0.004 3.996 13 N -0.257 5.257 14 C 0.121 3.879 15 C -0.461 4.461 16 H 0.111 0.889 17 C -0.202 4.202 18 N -0.362 5.362 19 Si 0.821 3.179 20 H -0.184 1.184 21 H -0.185 1.185 22 H -0.177 1.177 23 N -0.337 5.337 24 C 0.001 3.999 25 H 0.068 0.932 26 H 0.114 0.886 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.124 0.876 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.209 0.791 33 H 0.190 0.810 34 H 0.164 0.836 35 H 0.146 0.854 36 H 0.097 0.903 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.386 -3.747 12.197 12.981 hybrid contribution 0.016 -0.525 -0.364 0.639 sum -2.370 -4.272 11.834 12.802 Atomic orbital electron populations 1.22148 0.94193 1.02160 1.03143 1.22504 0.95055 0.93139 0.87419 1.21906 1.01347 0.93569 1.03524 1.86388 1.80144 1.16549 1.39337 1.20096 0.93515 0.84616 0.89628 1.67218 1.22272 1.14031 1.23630 1.23052 0.93513 0.87031 1.00379 1.22222 1.03271 1.03034 0.92724 1.21811 0.95560 0.91482 0.99049 1.18692 1.04768 0.93832 0.91461 1.19649 0.99507 1.11464 0.99782 1.23122 0.96928 0.88818 0.90746 1.69289 1.21256 1.25416 1.09721 1.20334 0.84333 0.89414 0.93811 1.19713 0.99633 1.24671 1.02074 0.88925 1.27161 0.93667 0.95051 1.04346 1.70210 1.03863 1.24651 1.37505 0.84902 0.80148 0.78094 0.74775 1.18407 1.18537 1.17726 1.68648 1.35095 1.15036 1.14878 1.23179 0.94011 0.93372 0.89378 0.93183 0.88603 0.93146 0.89424 0.87590 0.92909 0.93088 0.79081 0.81012 0.83609 0.85361 0.90290 0.82042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 9.53 71.98 0.69 -3.41 16 2 C 0.07 2.19 3.11 30.59 0.10 2.29 16 3 C -0.15 -3.80 9.56 71.98 0.69 -3.11 16 4 O -0.32 -12.13 8.25 -88.30 -0.73 -12.86 16 5 C 0.30 10.88 7.41 85.17 0.63 11.51 16 6 N -0.55 -16.50 8.64 -307.84 -2.66 -19.16 16 7 C 0.12 2.62 11.17 84.70 0.95 3.56 16 8 C -0.19 -4.14 10.09 22.33 0.23 -3.92 16 9 C -0.05 -1.54 9.71 22.72 0.22 -1.32 16 10 C -0.08 -3.11 5.54 -19.82 -0.11 -3.22 16 11 C -0.29 -13.46 5.33 -19.64 -0.10 -13.57 16 12 C 0.18 9.22 10.14 85.29 0.86 10.09 16 13 N -0.54 -31.64 7.85 -193.14 -1.52 -33.15 16 14 C 0.36 21.10 7.34 134.87 0.99 22.09 16 15 C -0.43 -24.24 9.34 23.41 0.22 -24.02 16 16 H 0.09 5.05 7.86 -2.91 -0.02 5.03 16 17 C 0.02 1.13 5.49 85.32 0.47 1.60 16 18 N -0.74 -40.07 11.43 21.85 0.25 -39.82 16 19 Si 1.00 37.96 29.56 68.60 2.03 39.99 16 20 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 21 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 22 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 23 N -0.62 -33.88 10.33 -193.15 -2.00 -35.88 16 24 C 0.17 8.11 10.87 85.29 0.93 9.04 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.09 2.46 6.98 -2.39 -0.02 2.45 16 29 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.19 2.66 8.06 -2.91 -0.02 2.63 16 33 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 34 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 35 H 0.13 6.35 7.80 -2.91 -0.02 6.33 16 36 H 0.29 13.73 8.29 -92.71 -0.77 12.96 16 37 H 0.16 6.22 8.06 -2.91 -0.02 6.19 16 Total: -1.00 -71.39 324.05 3.20 -68.19 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 1.08 Total: 25.09 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 6.75 Total: 7.60 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -5.92 Total: -128.01 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.73 Total: -12.86 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Total: -71.39 3.20 -68.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236101708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.274 kcal (2) G-P(sol) polarization free energy of solvation -71.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds