Wall clock time and date at job start Tue Mar 31 2020 07:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 117.00336 * 2 1 4 4 C 1.38756 * 120.05318 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94144 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.96880 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.47223 * 89.99796 * 6 5 4 8 8 C 1.46899 * 110.99922 * 293.95630 * 7 6 5 9 9 C 1.46901 * 111.00080 * 169.99527 * 7 6 5 10 10 C 1.50696 * 109.46976 * 190.00144 * 9 7 6 11 11 H 1.08000 * 120.00600 * 0.02562 * 10 9 7 12 12 C 1.37878 * 120.00159 * 180.02562 * 10 9 7 13 13 N 1.31512 * 120.00506 * 180.02562 * 12 10 9 14 14 Si 1.86807 * 119.99731 * 359.97438 * 12 10 9 15 15 H 1.48505 * 109.46909 * 90.00211 * 14 12 10 16 16 H 1.48501 * 109.47101 * 210.00171 * 14 12 10 17 17 H 1.48500 * 109.46840 * 330.00450 * 14 12 10 18 18 C 1.38285 * 120.05743 * 359.97438 * 5 4 3 19 19 C 1.38236 * 120.11138 * 359.97438 * 18 5 4 20 20 C 1.38171 * 120.05797 * 359.77034 * 19 18 5 21 21 C 1.50697 * 120.03065 * 180.25474 * 20 19 18 22 22 F 1.39903 * 109.47319 * 30.23168 * 21 20 19 23 23 F 1.39898 * 109.47402 * 150.22884 * 21 20 19 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99705 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99826 * 1 2 3 27 27 H 1.08005 * 120.02731 * 359.97213 * 4 3 2 28 28 H 1.09000 * 109.47153 * 209.99760 * 6 5 4 29 29 H 1.09003 * 109.47559 * 329.99930 * 6 5 4 30 30 H 1.08997 * 109.47415 * 59.99964 * 8 7 6 31 31 H 1.09005 * 109.47190 * 179.97438 * 8 7 6 32 32 H 1.08994 * 109.46894 * 299.99302 * 8 7 6 33 33 H 1.08993 * 109.47157 * 310.00074 * 9 7 6 34 34 H 1.09000 * 109.46823 * 70.00376 * 9 7 6 35 35 H 0.96992 * 120.00253 * 179.97438 * 13 12 10 36 36 H 1.07995 * 119.94343 * 180.02562 * 18 5 4 37 37 H 1.07999 * 119.97602 * 180.02562 * 19 18 5 38 38 H 1.08998 * 109.47139 * 270.22978 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6047 0.0000 6 6 1.1021 4.8698 0.0000 7 7 0.8365 5.2812 1.3850 8 6 -0.0254 4.3069 2.0674 9 6 0.2492 6.6269 1.4310 10 6 0.2181 7.1128 2.8571 11 1 0.5971 6.4851 3.6500 12 6 -0.2942 8.3590 3.1499 13 7 -0.3209 8.7833 4.3944 14 14 -0.9491 9.4453 1.7784 15 1 -2.3949 9.1718 1.5780 16 1 -0.7613 10.8721 2.1447 17 1 -0.2117 9.1553 0.5225 18 6 3.3021 3.6757 -0.0005 19 6 4.0560 2.5170 0.0000 20 6 3.4312 1.2847 0.0059 21 6 4.2537 0.0221 0.0122 22 9 5.4630 0.2566 0.6755 23 9 3.5488 -0.9904 0.6719 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 0.2129 2.3203 0.0005 28 1 1.6516 5.6583 -0.5142 29 1 0.1573 4.6911 -0.5134 30 1 0.4652 3.3337 2.0799 31 1 -0.2059 4.6356 3.0910 32 1 -0.9749 4.2283 1.5381 33 1 0.8514 7.3069 0.8286 34 1 -0.7662 6.5938 1.0362 35 1 -0.6810 9.6601 4.6002 36 1 3.7924 4.6379 -0.0005 37 1 5.1345 2.5750 0.0000 38 1 4.4557 -0.2851 -1.0139 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237278064.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:37 Heat of formation + Delta-G solvation = -104.738699 kcal Electronic energy + Delta-G solvation = -22495.367768 eV Core-core repulsion = 18781.207997 eV Total energy + Delta-G solvation = -3714.159771 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.94779 -46.95423 -40.35670 -38.00835 -36.41896 -32.96632 -31.98555 -30.26644 -28.40026 -27.70231 -27.30833 -25.27604 -23.23657 -22.30618 -21.17302 -20.23396 -18.02736 -17.50992 -17.30498 -16.94325 -16.76590 -15.86738 -15.83885 -14.94558 -14.62671 -14.54929 -14.47881 -14.05170 -13.84155 -13.53168 -13.27541 -13.06296 -12.91473 -12.44529 -12.38316 -12.03406 -12.01132 -11.64200 -11.51006 -11.30946 -11.13545 -10.97023 -10.80075 -10.70696 -10.22679 -9.89723 -9.34378 -8.94525 -8.61898 -8.26825 -7.49278 -6.08904 -4.06886 1.07957 1.37941 3.09027 3.24222 3.32442 3.33235 3.52450 3.75030 4.16168 4.37693 4.49334 4.69535 4.85230 4.90636 4.95561 5.01696 5.03950 5.14616 5.24038 5.35745 5.40547 5.50779 5.64965 5.73898 5.95107 6.04198 6.12158 6.15448 6.28128 6.58978 6.65203 6.68743 6.76817 6.91183 7.20007 7.52045 7.79923 7.94146 8.60060 8.99803 9.51996 11.04176 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.027099 B = 0.003680 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.010124 B = 7605.841893 C = 7964.836828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.156 3.844 4 C -0.204 4.204 5 C -0.004 4.004 6 C 0.082 3.918 7 N -0.523 5.523 8 C 0.032 3.968 9 C 0.162 3.838 10 C -0.511 4.511 11 H 0.081 0.919 12 C 0.069 3.931 13 N -0.899 5.899 14 Si 0.875 3.125 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.267 1.267 18 C -0.136 4.136 19 C -0.051 4.051 20 C -0.215 4.215 21 C 0.325 3.675 22 F -0.204 7.204 23 F -0.192 7.192 24 H 0.100 0.900 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.131 0.869 28 H 0.082 0.918 29 H 0.035 0.965 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.011 0.989 33 H 0.030 0.970 34 H -0.015 1.015 35 H 0.264 0.736 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.906 -17.079 -13.335 22.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.220 6.220 3 C 0.110 3.890 4 C -0.223 4.223 5 C -0.004 4.004 6 C -0.046 4.046 7 N -0.246 5.246 8 C -0.116 4.116 9 C 0.036 3.964 10 C -0.549 4.549 11 H 0.099 0.901 12 C -0.133 4.133 13 N -0.538 5.538 14 Si 0.703 3.297 15 H -0.204 1.204 16 H -0.211 1.211 17 H -0.192 1.192 18 C -0.155 4.155 19 C -0.069 4.069 20 C -0.216 4.216 21 C 0.271 3.729 22 F -0.185 7.185 23 F -0.173 7.173 24 H 0.118 0.882 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.149 0.851 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.029 0.971 33 H 0.048 0.952 34 H 0.002 0.998 35 H 0.074 0.926 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.376 -17.106 -12.929 22.106 hybrid contribution -1.470 0.812 -0.873 1.893 sum 3.906 -16.294 -13.802 21.708 Atomic orbital electron populations 1.23096 0.78242 1.03962 1.01645 1.86162 1.21466 1.26138 1.88227 1.18556 0.90847 0.84710 0.94844 1.21138 1.00113 0.91496 1.09547 1.19871 0.94124 0.94199 0.92237 1.21183 0.97258 0.93673 0.92524 1.61986 1.47751 1.03811 1.11097 1.22342 0.93315 0.95041 1.00889 1.20227 0.92064 0.85138 0.98952 1.21014 1.40480 1.01877 0.91525 0.90069 1.24895 0.95526 0.97549 0.95295 1.69886 1.46389 1.19699 1.17805 0.86865 0.79593 0.80269 0.83010 1.20368 1.21074 1.19196 1.20970 0.93101 0.98503 1.02895 1.20747 1.00230 0.90400 0.95557 1.19688 0.91291 0.95356 1.15300 1.20042 0.76369 0.84112 0.92371 1.92982 1.46701 1.94931 1.83885 1.93024 1.79000 1.61624 1.83668 0.88157 0.92645 0.92292 0.85115 0.89917 0.94700 0.93102 0.89975 0.97084 0.95230 0.99773 0.92597 0.84879 0.84653 0.86876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.22 16 2 O -0.31 -3.76 8.44 -19.43 -0.16 -3.92 16 3 C 0.16 2.06 6.58 -39.22 -0.26 1.80 16 4 C -0.20 -2.73 6.95 -39.43 -0.27 -3.00 16 5 C 0.00 -0.05 4.88 -104.65 -0.51 -0.56 16 6 C 0.08 1.33 5.12 -4.98 -0.03 1.30 16 7 N -0.52 -10.68 4.74 -245.83 -1.17 -11.85 16 8 C 0.03 0.62 8.95 60.06 0.54 1.15 16 9 C 0.16 3.84 3.79 -4.98 -0.02 3.82 16 10 C -0.51 -14.33 9.01 -34.44 -0.31 -14.64 16 11 H 0.08 2.50 7.37 -52.49 -0.39 2.11 16 12 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 13 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 14 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 18 C -0.14 -1.84 9.70 -39.56 -0.38 -2.22 16 19 C -0.05 -0.63 9.40 -39.61 -0.37 -1.00 16 20 C -0.21 -2.72 5.75 -104.47 -0.60 -3.32 16 21 C 0.32 3.64 5.57 36.00 0.20 3.84 16 22 F -0.20 -2.49 16.49 2.25 0.04 -2.45 16 23 F -0.19 -2.56 15.33 2.25 0.03 -2.52 16 24 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 26 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 27 H 0.13 1.58 6.28 -52.48 -0.33 1.25 16 28 H 0.08 1.28 7.87 -51.93 -0.41 0.87 16 29 H 0.03 0.54 8.06 -51.93 -0.42 0.12 16 30 H 0.05 0.87 6.17 -51.93 -0.32 0.55 16 31 H 0.08 1.76 6.76 -51.93 -0.35 1.40 16 32 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.03 0.70 6.99 -51.93 -0.36 0.34 16 34 H -0.02 -0.36 7.55 -51.93 -0.39 -0.75 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.14 1.37 7.61 -52.49 -0.40 0.97 16 38 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 318.93 15.07 4.81 4.81 Total: -1.00 -31.76 318.93 -6.49 -38.25 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -5.02 Total: -2.49 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -1.12 Total: -9.73 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: -0.39 Total: -38.38 kcal Atomic # 8 Polarization: -3.76 SS G_CDS: -0.16 Total: -3.92 kcal Atomic # 9 Polarization: -5.04 SS G_CDS: 0.07 Total: -4.97 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.76 -6.49 -38.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237278064.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.484 kcal (2) G-P(sol) polarization free energy of solvation -31.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds