Wall clock time and date at job start Tue Mar 31 2020 06:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42904 * 109.47194 * 2 1 4 4 C 1.35559 * 116.99946 * 180.02562 * 3 2 1 5 5 C 1.39176 * 119.51603 * 180.02562 * 4 3 2 6 6 C 1.37963 * 119.27949 * 179.76269 * 5 4 3 7 7 C 1.50693 * 120.82796 * 180.23238 * 6 5 4 8 8 C 1.40335 * 118.34587 * 0.45893 * 6 5 4 9 9 C 1.47671 * 120.50217 * 179.79878 * 8 6 5 10 10 N 1.32908 * 120.25515 * 307.08266 * 9 8 6 11 11 C 1.31999 * 120.07430 * 180.02562 * 10 9 8 12 12 C 1.39204 * 120.59357 * 359.97438 * 11 10 9 13 13 N 1.31600 * 120.52105 * 359.97438 * 12 11 10 14 14 C 1.33984 * 119.90324 * 0.02562 * 13 12 11 15 15 C 1.40743 * 120.29178 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00182 * 169.21056 * 15 14 13 17 17 C 1.40160 * 120.00042 * 349.19585 * 15 14 13 18 18 N 1.30696 * 119.99715 * 0.02562 * 17 15 14 19 19 Si 1.86790 * 120.00145 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47441 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47181 * 120.00400 * 19 17 15 22 22 H 1.48501 * 109.47413 * 240.00319 * 19 17 15 23 23 C 1.39632 * 118.98758 * 359.52226 * 8 6 5 24 24 N 1.31679 * 120.61171 * 0.25506 * 23 8 6 25 25 H 1.09007 * 109.47050 * 300.00095 * 1 2 3 26 26 H 1.09001 * 109.47598 * 59.99670 * 1 2 3 27 27 H 1.08998 * 109.47410 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47050 * 239.99905 * 2 1 3 29 29 H 1.09001 * 109.47598 * 120.00330 * 2 1 3 30 30 H 1.08000 * 120.36212 * 0.02562 * 5 4 3 31 31 H 1.08996 * 109.47770 * 266.25312 * 7 6 5 32 32 H 1.09011 * 109.47119 * 26.25774 * 7 6 5 33 33 H 1.09000 * 109.47398 * 146.24973 * 7 6 5 34 34 H 1.07992 * 119.70223 * 180.02562 * 11 10 9 35 35 H 1.08000 * 119.73588 * 180.27832 * 12 11 10 36 36 H 0.97003 * 120.00286 * 179.97438 * 18 17 15 37 37 H 1.07994 * 119.69091 * 180.27617 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3502 1.5249 -0.0005 5 6 3.8713 2.8154 0.0000 6 6 5.2398 2.9905 0.0044 7 6 5.8416 4.3721 0.0104 8 6 6.0575 1.8500 -0.0016 9 6 7.5282 1.9822 -0.0017 10 7 8.1328 2.7361 -0.9142 11 6 9.4477 2.8513 -0.9113 12 6 10.2149 2.1887 0.0428 13 7 9.6406 1.4370 0.9576 14 6 8.3073 1.3057 0.9736 15 6 7.6845 0.5042 1.9486 16 1 6.6118 0.5367 2.0697 17 6 8.4564 -0.3364 2.7622 18 7 9.7545 -0.3756 2.6158 19 14 7.6298 -1.4006 4.0558 20 1 6.1626 -1.1741 4.0195 21 1 7.9165 -2.8309 3.7771 22 1 8.1532 -1.0435 5.3989 23 6 5.4591 0.5884 -0.0017 24 7 4.1478 0.4682 -0.0012 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.2116 3.6705 0.0012 31 1 6.0512 4.6816 -1.0135 32 1 5.1403 5.0719 0.4652 33 1 6.7684 4.3622 0.5839 34 1 9.9327 3.4658 -1.6552 35 1 11.2895 2.2964 0.0351 36 1 10.2889 -0.9571 3.1792 37 1 6.0775 -0.2970 -0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238972794.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:50 Heat of formation + Delta-G solvation = 27.040629 kcal Electronic energy + Delta-G solvation = -21906.840258 eV Core-core repulsion = 18649.084053 eV Total energy + Delta-G solvation = -3257.756204 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -40.19036 -38.98528 -37.54281 -34.25586 -33.47924 -32.33368 -31.76053 -30.96260 -28.47688 -27.31882 -26.23481 -23.55057 -23.32599 -22.22336 -21.42527 -20.59122 -17.74997 -17.55947 -16.55909 -16.04501 -15.93772 -15.76992 -14.98985 -14.28906 -14.11797 -13.79927 -13.66171 -13.24178 -12.95868 -12.72735 -12.68833 -12.44541 -12.09954 -11.89012 -11.79305 -11.55878 -11.44815 -11.43941 -11.14684 -10.77114 -10.51078 -10.28754 -9.93873 -9.64385 -9.33663 -9.05607 -8.94179 -8.18497 -7.67483 -7.36801 -6.66924 -4.80611 1.64163 1.80015 2.45745 2.87877 2.96636 3.02443 3.09933 3.36583 3.75614 4.34062 4.51485 4.85964 5.07688 5.13084 5.28459 5.39134 5.40463 5.46776 5.59221 5.74381 5.79067 5.88244 5.88626 5.98311 6.02843 6.15647 6.17670 6.26599 6.36207 6.47999 6.57904 6.74851 6.85362 6.92855 7.05817 7.14181 7.53476 7.71779 7.92271 8.25048 8.43235 8.52947 9.10879 9.70061 9.96759 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.013772 B = 0.006384 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.573002 B = 4384.694403 C = 6028.608144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.067 3.933 3 O -0.314 6.314 4 C 0.298 3.702 5 C -0.196 4.196 6 C -0.004 4.004 7 C -0.099 4.099 8 C -0.055 4.055 9 C -0.022 4.022 10 N -0.408 5.408 11 C -0.117 4.117 12 C 0.089 3.911 13 N -0.453 5.453 14 C 0.224 3.776 15 C -0.403 4.403 16 H 0.094 0.906 17 C 0.067 3.933 18 N -0.705 5.705 19 Si 0.908 3.092 20 H -0.255 1.255 21 H -0.269 1.269 22 H -0.269 1.269 23 C 0.156 3.844 24 N -0.545 5.545 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.132 0.868 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.280 0.720 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.118 1.084 -1.585 9.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.008 4.008 3 O -0.223 6.223 4 C 0.120 3.880 5 C -0.216 4.216 6 C -0.012 4.012 7 C -0.155 4.155 8 C -0.059 4.059 9 C -0.170 4.170 10 N -0.120 5.120 11 C -0.279 4.279 12 C -0.083 4.083 13 N -0.169 5.169 14 C 0.099 3.901 15 C -0.433 4.433 16 H 0.112 0.888 17 C -0.160 4.160 18 N -0.325 5.325 19 Si 0.731 3.269 20 H -0.179 1.179 21 H -0.193 1.193 22 H -0.194 1.194 23 C -0.001 4.001 24 N -0.268 5.268 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.149 0.851 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.091 0.909 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.502 0.320 -1.473 9.621 hybrid contribution 0.369 0.077 0.537 0.656 sum -9.134 0.397 -0.936 9.190 Atomic orbital electron populations 1.21805 0.93642 1.02469 1.02962 1.22481 0.94077 0.81839 1.02433 1.86127 1.17625 1.29910 1.88605 1.19722 0.83464 0.90066 0.94701 1.20664 0.94807 0.95177 1.10996 1.20193 0.91497 0.96219 0.93280 1.20637 1.00621 0.91390 1.02889 1.19060 0.92316 0.92644 1.01896 1.19799 0.91391 1.06708 0.99090 1.67734 1.10846 1.12608 1.20827 1.22556 0.90348 1.09981 1.05008 1.23538 0.99952 0.92765 0.92015 1.69526 1.09887 1.16073 1.21445 1.19220 0.88430 0.90890 0.91545 1.19740 0.95435 1.16353 1.11777 0.88817 1.26178 0.94744 0.97269 0.97853 1.70031 1.05649 1.26507 1.30267 0.86226 0.81071 0.79619 0.80003 1.17853 1.19344 1.19420 1.22614 0.88065 0.97256 0.92137 1.67247 1.06642 1.32642 1.20259 0.91888 0.91920 0.90675 0.91917 0.91823 0.85059 0.90412 0.92368 0.90997 0.85427 0.85228 0.90892 0.81984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 37.15 0.38 -1.12 16 2 C 0.07 0.91 6.02 37.15 0.22 1.14 16 3 O -0.31 -5.18 10.11 -18.37 -0.19 -5.36 16 4 C 0.30 5.52 7.49 -16.96 -0.13 5.39 16 5 C -0.20 -3.47 9.71 -39.33 -0.38 -3.85 16 6 C 0.00 -0.07 5.95 -103.94 -0.62 -0.69 16 7 C -0.10 -1.69 9.03 36.00 0.33 -1.36 16 8 C -0.06 -1.20 5.01 -104.74 -0.52 -1.72 16 9 C -0.02 -0.54 5.39 -82.12 -0.44 -0.98 16 10 N -0.41 -9.46 9.41 -8.98 -0.08 -9.54 16 11 C -0.12 -2.56 11.22 -17.12 -0.19 -2.75 16 12 C 0.09 2.00 11.22 -17.29 -0.19 1.81 16 13 N -0.45 -11.75 8.13 -10.72 -0.09 -11.83 16 14 C 0.22 5.75 6.52 -84.55 -0.55 5.20 16 15 C -0.40 -10.00 7.84 -37.91 -0.30 -10.30 16 16 H 0.09 2.26 5.87 -52.49 -0.31 1.95 16 17 C 0.07 1.60 5.49 -17.31 -0.10 1.50 16 18 N -0.70 -17.45 11.55 55.56 0.64 -16.80 16 19 Si 0.91 17.68 29.56 -169.99 -5.02 12.65 16 20 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 21 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 22 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 23 C 0.16 3.24 8.94 -17.10 -0.15 3.09 16 24 N -0.54 -10.69 9.18 -12.92 -0.12 -10.81 16 25 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.86 8.10 -51.92 -0.42 0.44 16 29 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 30 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 31 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 0.82 8.08 -51.92 -0.42 0.40 16 33 H 0.07 1.38 7.17 -51.93 -0.37 1.01 16 34 H 0.13 2.37 8.06 -52.49 -0.42 1.95 16 35 H 0.13 2.51 8.06 -52.49 -0.42 2.08 16 36 H 0.28 6.22 8.29 -40.82 -0.34 5.88 16 37 H 0.16 3.36 7.52 -52.49 -0.39 2.96 16 LS Contribution 319.22 15.07 4.81 4.81 Total: -1.00 -28.39 319.22 -7.12 -35.51 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -4.43 Total: 6.02 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -2.65 Total: -4.65 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.35 Total: -48.99 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.19 Total: -5.36 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.02 Total: 12.65 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.39 -7.12 -35.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238972794.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.554 kcal (2) G-P(sol) polarization free energy of solvation -28.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds