Wall clock time and date at job start Tue Mar 31 2020 06:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00290 * 2 1 4 4 C 1.50699 * 109.47384 * 179.97438 * 3 2 1 5 5 C 1.38388 * 119.84775 * 90.00314 * 4 3 2 6 6 C 1.37932 * 120.14801 * 180.02562 * 5 4 3 7 7 C 1.39632 * 119.84690 * 359.97438 * 6 5 4 8 8 C 1.47900 * 120.14924 * 180.02562 * 7 6 5 9 9 C 1.39042 * 120.31527 * 310.00074 * 8 7 6 10 10 C 1.38398 * 119.96062 * 179.97438 * 9 8 7 11 11 F 1.35101 * 119.69999 * 179.97438 * 10 9 8 12 12 C 1.39217 * 120.60742 * 359.97438 * 10 9 8 13 13 C 1.36357 * 120.64646 * 0.03603 * 12 10 9 14 14 C 1.40785 * 120.02182 * 0.26333 * 13 12 10 15 15 C 1.40820 * 120.30401 * 179.71802 * 14 13 12 16 16 H 1.08000 * 120.00515 * 153.50972 * 15 14 13 17 17 C 1.40049 * 119.99883 * 333.51360 * 15 14 13 18 18 N 1.30799 * 119.99581 * 344.20764 * 17 15 14 19 19 Si 1.86798 * 120.00249 * 164.20677 * 17 15 14 20 20 H 1.48499 * 109.46901 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47334 * 119.99823 * 19 17 15 22 22 H 1.48494 * 109.47205 * 240.00180 * 19 17 15 23 23 C 1.39639 * 119.70773 * 0.27387 * 7 6 5 24 24 C 1.37933 * 119.84679 * 359.45012 * 23 7 6 25 25 H 1.08994 * 109.46798 * 300.00106 * 1 2 3 26 26 H 1.09001 * 109.46729 * 59.99827 * 1 2 3 27 27 H 1.09001 * 109.47118 * 179.97438 * 1 2 3 28 28 H 1.00908 * 110.99837 * 236.04847 * 2 1 3 29 29 H 1.09006 * 109.46772 * 59.99744 * 3 2 1 30 30 H 1.09008 * 109.47196 * 300.00448 * 3 2 1 31 31 H 1.08003 * 119.93062 * 359.97438 * 5 4 3 32 32 H 1.08004 * 120.07953 * 179.97438 * 6 5 4 33 33 H 1.08005 * 120.02306 * 359.97438 * 9 8 7 34 34 H 1.07998 * 119.67435 * 180.02562 * 12 10 9 35 35 H 1.08000 * 119.98736 * 179.97438 * 13 12 10 36 36 H 0.97001 * 119.99793 * 180.02562 * 18 17 15 37 37 H 1.08001 * 120.07613 * 179.71992 * 23 7 6 38 38 H 1.07999 * 119.92631 * 180.25466 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5020 1.3312 0.0006 5 6 4.1910 1.3127 -1.1994 6 6 5.5698 1.2753 -1.2060 7 6 6.2703 1.2567 0.0017 8 6 7.7488 1.2173 0.0024 9 6 8.4261 0.2793 -0.7687 10 6 9.8098 0.2493 -0.7630 11 9 10.4626 -0.6646 -1.5139 12 6 10.5352 1.1523 0.0094 13 6 9.8963 2.0823 0.7750 14 6 8.4894 2.1327 0.7942 15 6 7.8234 3.0869 1.5873 16 1 6.8358 3.4249 1.3102 17 6 8.4417 3.5976 2.7354 18 7 9.4790 2.9861 3.2465 19 14 7.7852 5.1519 3.5370 20 1 6.6130 5.6465 2.7712 21 1 7.3742 4.8536 4.9324 22 1 8.8462 6.1909 3.5448 23 6 5.5686 1.2703 1.2090 24 6 4.1900 1.3135 1.2012 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8306 -0.5261 -0.7815 29 1 1.6460 1.8947 0.8900 30 1 1.6460 1.8948 -0.8900 31 1 3.6479 1.3267 -2.1329 32 1 6.1064 1.2605 -2.1432 33 1 7.8729 -0.4254 -1.3719 34 1 11.6145 1.1156 0.0023 35 1 10.4695 2.7774 1.3705 36 1 9.9070 3.3396 4.0419 37 1 6.1043 1.2515 2.1466 38 1 3.6462 1.3282 2.1342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242993021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:21 Heat of formation + Delta-G solvation = -14.267652 kcal Electronic energy + Delta-G solvation = -21302.153068 eV Core-core repulsion = 18022.685641 eV Total energy + Delta-G solvation = -3279.467427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -47.51353 -39.02803 -37.39407 -35.69673 -33.77233 -31.93147 -30.41871 -29.42602 -29.09264 -26.27582 -25.05468 -23.49924 -22.19620 -21.43690 -20.88289 -19.76582 -17.53433 -16.62537 -16.11623 -15.56614 -15.13145 -14.69505 -14.54342 -14.46784 -14.28992 -14.05443 -14.00173 -13.51963 -12.87757 -12.74061 -12.41896 -12.15723 -12.06176 -11.97667 -11.93134 -11.50310 -11.36188 -11.18463 -10.91433 -10.66515 -10.48384 -10.33644 -10.02462 -9.54538 -9.31877 -8.56257 -8.29553 -8.23492 -7.50030 -7.31707 -6.94800 -4.50280 1.75912 2.08986 2.55499 2.80868 2.98875 3.02906 3.05327 3.79580 4.19455 4.39016 4.62180 5.05634 5.15906 5.31001 5.36304 5.41177 5.51643 5.61250 5.67420 5.72683 5.76688 5.94371 6.02998 6.14131 6.26025 6.31096 6.66175 6.69507 6.83079 6.86545 6.91120 7.01937 7.04527 7.17001 7.31571 7.33122 7.37640 7.53728 7.71923 7.75688 7.87058 8.04257 8.38815 8.64165 8.71652 9.95984 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.012401 B = 0.005676 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.354660 B = 4931.708302 C = 6890.931580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.690 5.690 3 C 0.105 3.895 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.130 4.130 7 C 0.021 3.979 8 C -0.168 4.168 9 C -0.095 4.095 10 C -0.048 4.048 11 F -0.174 7.174 12 C -0.124 4.124 13 C -0.137 4.137 14 C 0.123 3.877 15 C -0.441 4.441 16 H 0.088 0.912 17 C 0.075 3.925 18 N -0.784 5.784 19 Si 0.907 3.093 20 H -0.257 1.257 21 H -0.272 1.272 22 H -0.270 1.270 23 C -0.096 4.096 24 C -0.103 4.103 25 H 0.063 0.937 26 H 0.018 0.982 27 H 0.065 0.935 28 H 0.343 0.657 29 H 0.075 0.925 30 H 0.032 0.968 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.128 0.872 36 H 0.284 0.716 37 H 0.130 0.870 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.257 -0.438 -2.974 10.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.321 5.321 3 C -0.023 4.023 4 C -0.115 4.115 5 C -0.137 4.137 6 C -0.148 4.148 7 C 0.021 3.979 8 C -0.170 4.170 9 C -0.114 4.114 10 C -0.067 4.067 11 F -0.153 7.153 12 C -0.143 4.143 13 C -0.156 4.156 14 C 0.120 3.880 15 C -0.469 4.469 16 H 0.106 0.894 17 C -0.144 4.144 18 N -0.408 5.408 19 Si 0.731 3.269 20 H -0.181 1.181 21 H -0.197 1.197 22 H -0.195 1.195 23 C -0.114 4.114 24 C -0.121 4.121 25 H 0.082 0.918 26 H 0.037 0.963 27 H 0.084 0.916 28 H 0.160 0.840 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.146 0.854 36 H 0.096 0.904 37 H 0.148 0.852 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.046 -0.522 -2.097 10.276 hybrid contribution -0.198 0.758 -0.588 0.980 sum -10.244 0.237 -2.685 10.593 Atomic orbital electron populations 1.22199 0.88217 1.01653 1.00181 1.60449 1.07041 1.14305 1.50305 1.20828 0.91674 0.89294 1.00543 1.19521 0.93840 1.04628 0.93538 1.20722 0.94192 1.02236 0.96526 1.21221 0.93519 1.02414 0.97651 1.18743 0.92507 0.94487 0.92172 1.18383 0.90304 1.00842 1.07455 1.20524 0.91879 0.99203 0.99769 1.17183 0.90016 0.96312 1.03228 1.91287 1.81925 1.66313 1.75800 1.20501 0.98351 0.96951 0.98504 1.20952 0.94695 0.99810 1.00170 1.17577 0.91398 0.89813 0.89238 1.19656 1.03043 1.18511 1.05721 0.89440 1.25996 0.94005 0.97528 0.96913 1.69787 1.17465 1.35497 1.18054 0.86245 0.80202 0.81186 0.79245 1.18082 1.19717 1.19528 1.21429 0.93083 0.98210 0.98703 1.20841 0.94118 1.00323 0.96829 0.91806 0.96328 0.91578 0.83981 0.90642 0.94981 0.87508 0.86769 0.87929 0.88145 0.85448 0.90446 0.85209 0.86880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.70 60.07 0.64 0.90 16 2 N -0.69 -8.21 6.84 -122.42 -0.84 -9.05 16 3 C 0.10 1.33 5.80 -4.98 -0.03 1.30 16 4 C -0.11 -1.79 5.40 -104.51 -0.56 -2.35 16 5 C -0.12 -1.87 9.68 -39.64 -0.38 -2.25 16 6 C -0.13 -2.36 9.52 -39.17 -0.37 -2.74 16 7 C 0.02 0.44 4.92 -104.90 -0.52 -0.08 16 8 C -0.17 -3.89 5.53 -104.24 -0.58 -4.47 16 9 C -0.09 -2.14 9.48 -39.22 -0.37 -2.51 16 10 C -0.05 -1.11 7.31 -39.16 -0.29 -1.40 16 11 F -0.17 -3.91 17.26 2.25 0.04 -3.88 16 12 C -0.12 -2.87 9.94 -39.90 -0.40 -3.27 16 13 C -0.14 -3.35 8.61 -39.30 -0.34 -3.69 16 14 C 0.12 3.03 5.56 -106.56 -0.59 2.44 16 15 C -0.44 -10.64 7.13 -37.93 -0.27 -10.91 16 16 H 0.09 2.10 6.60 -52.49 -0.35 1.75 16 17 C 0.08 1.73 5.17 -17.31 -0.09 1.64 16 18 N -0.78 -18.62 10.96 55.55 0.61 -18.02 16 19 Si 0.91 17.47 29.59 -169.99 -5.03 12.44 16 20 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 21 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 22 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 23 C -0.10 -1.91 7.99 -39.17 -0.31 -2.22 16 24 C -0.10 -1.76 9.68 -39.64 -0.38 -2.14 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.34 3.88 8.81 -39.29 -0.35 3.53 16 29 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 30 H 0.03 0.37 8.08 -51.92 -0.42 -0.05 16 31 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 32 H 0.11 1.97 8.04 -52.48 -0.42 1.55 16 33 H 0.10 2.12 8.04 -52.48 -0.42 1.69 16 34 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 35 H 0.13 3.15 6.22 -52.49 -0.33 2.83 16 36 H 0.28 6.14 8.30 -40.82 -0.34 5.80 16 37 H 0.13 2.74 7.31 -52.49 -0.38 2.35 16 38 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 326.47 15.07 4.92 4.92 Total: -1.00 -25.56 326.47 -9.90 -35.46 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -4.76 Total: 9.87 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: -4.84 Total: -31.75 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: -0.23 Total: -27.06 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.04 Total: -3.88 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -25.56 -9.90 -35.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242993021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.192 kcal (2) G-P(sol) polarization free energy of solvation -25.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds