Wall clock time and date at job start Tue Mar 31 2020 06:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 111.00111 * 2 1 4 4 C 1.50701 * 109.47089 * 180.02562 * 3 2 1 5 5 C 1.38340 * 119.93963 * 269.97387 * 4 3 2 6 6 C 1.38300 * 120.24561 * 180.02562 * 5 4 3 7 7 C 1.38048 * 120.11931 * 359.76088 * 6 5 4 8 8 C 1.39316 * 119.87732 * 0.51839 * 7 6 5 9 9 C 1.48386 * 120.12107 * 179.74056 * 8 7 6 10 10 C 1.39814 * 119.96513 * 179.74712 * 9 8 7 11 11 C 1.38234 * 120.42560 * 179.97438 * 10 9 8 12 12 C 1.38076 * 120.34451 * 0.02562 * 11 10 9 13 13 F 1.35093 * 120.03897 * 179.97438 * 12 11 10 14 14 C 1.41031 * 119.91494 * 359.67336 * 12 11 10 15 15 C 1.41320 * 120.20915 * 180.30414 * 14 12 11 16 16 H 1.08001 * 119.99766 * 329.91752 * 15 14 12 17 17 C 1.39915 * 120.00362 * 149.90450 * 15 14 12 18 18 N 1.30859 * 119.99960 * 162.20597 * 17 15 14 19 19 Si 1.86792 * 120.00179 * 342.21590 * 17 15 14 20 20 H 1.48498 * 109.47554 * 95.42293 * 19 17 15 21 21 H 1.48501 * 109.47466 * 215.42449 * 19 17 15 22 22 H 1.48501 * 109.47284 * 335.42276 * 19 17 15 23 23 C 1.38672 * 119.96470 * 359.71888 * 9 8 7 24 24 C 1.38000 * 119.93853 * 90.00131 * 4 3 2 25 25 H 1.08997 * 109.46562 * 300.00029 * 1 2 3 26 26 H 1.08999 * 109.46694 * 59.99852 * 1 2 3 27 27 H 1.08991 * 109.47127 * 180.02562 * 1 2 3 28 28 H 1.00896 * 111.00145 * 123.95185 * 2 1 3 29 29 H 1.08995 * 109.47530 * 59.99824 * 3 2 1 30 30 H 1.09006 * 109.46833 * 299.99900 * 3 2 1 31 31 H 1.07998 * 119.88246 * 0.02562 * 5 4 3 32 32 H 1.07998 * 119.94268 * 180.02562 * 6 5 4 33 33 H 1.07999 * 120.05998 * 180.27574 * 7 6 5 34 34 H 1.08003 * 119.79171 * 359.95105 * 10 9 8 35 35 H 1.07994 * 119.82953 * 179.97438 * 11 10 9 36 36 H 0.96996 * 120.00254 * 180.02562 * 18 17 15 37 37 H 1.08001 * 120.17463 * 0.03020 * 23 9 8 38 38 H 1.07995 * 120.06309 * 359.95201 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5020 1.3312 -0.0006 5 6 4.1927 1.3131 1.1979 6 6 5.5752 1.2767 1.2047 7 6 6.2734 1.2532 0.0140 8 6 5.5831 1.2772 -1.1959 9 6 6.3284 1.2580 -2.4789 10 6 5.6322 1.2768 -3.6912 11 6 6.3168 1.2597 -4.8920 12 6 7.6970 1.2232 -4.9076 13 9 8.3598 1.2061 -6.0846 14 6 8.4140 1.2103 -3.6932 15 6 9.8268 1.1795 -3.7019 16 1 10.3514 0.6974 -4.5135 17 6 10.5460 1.7739 -2.6592 18 7 11.8023 1.4608 -2.4693 19 14 9.7128 3.0141 -1.5381 20 1 9.2187 2.3256 -0.3188 21 1 10.6877 4.0657 -1.1520 22 1 8.5696 3.6373 -2.2523 23 6 7.7146 1.2220 -2.4742 24 6 4.1899 1.3130 -1.1968 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8306 -0.5261 0.7813 29 1 1.6460 1.8948 0.8899 30 1 1.6460 1.8948 -0.8901 31 1 3.6504 1.3275 2.1317 32 1 6.1094 1.2623 2.1431 33 1 7.3528 1.2203 0.0204 34 1 4.5525 1.3045 -3.6896 35 1 5.7693 1.2740 -5.8228 36 1 12.3009 1.8726 -1.7463 37 1 8.2541 1.2074 -1.5387 38 1 3.6498 1.3268 -2.1318 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242997448.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:40 Heat of formation + Delta-G solvation = -9.452717 kcal Electronic energy + Delta-G solvation = -21301.458005 eV Core-core repulsion = 18022.199369 eV Total energy + Delta-G solvation = -3279.258636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -47.43437 -39.44753 -37.54990 -35.95620 -33.85058 -31.98511 -31.38982 -30.49667 -28.08373 -26.68983 -25.30423 -23.74444 -22.66517 -22.27157 -20.70609 -19.58981 -17.56861 -17.06278 -16.35635 -15.80828 -15.32369 -15.26306 -14.78815 -14.58128 -14.43824 -14.21323 -13.74642 -13.59904 -13.39286 -12.80234 -12.65724 -12.56378 -12.31961 -11.99978 -11.89942 -11.89310 -11.58390 -11.36616 -10.91276 -10.85087 -10.73678 -10.42837 -9.98827 -9.73975 -9.28840 -8.88783 -8.72438 -8.50416 -7.88153 -7.17421 -7.06241 -4.60382 1.24404 1.61402 2.43209 2.55607 2.99169 3.12158 3.23260 3.86792 3.89409 4.27419 4.50397 4.77821 4.91363 5.13512 5.13834 5.19645 5.21190 5.31965 5.38812 5.50629 5.63790 5.65002 5.71364 5.79576 5.81240 6.08560 6.18703 6.34055 6.39928 6.58365 6.66684 6.72523 6.75496 6.88287 7.02284 7.15025 7.16998 7.26128 7.33034 7.48219 7.62557 7.87905 8.22395 8.44412 8.61990 9.95111 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.019568 B = 0.004872 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.564398 B = 5745.307545 C = 6922.883285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.689 5.689 3 C 0.102 3.898 4 C -0.090 4.090 5 C -0.128 4.128 6 C -0.118 4.118 7 C -0.117 4.117 8 C -0.020 4.020 9 C -0.028 4.028 10 C -0.203 4.203 11 C -0.114 4.114 12 C -0.005 4.005 13 F -0.156 7.156 14 C 0.065 3.935 15 C -0.438 4.438 16 H 0.097 0.903 17 C 0.085 3.915 18 N -0.799 5.799 19 Si 0.903 3.097 20 H -0.265 1.265 21 H -0.286 1.286 22 H -0.241 1.241 23 C -0.200 4.200 24 C -0.092 4.092 25 H 0.019 0.981 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.343 0.657 29 H 0.036 0.964 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.288 0.712 37 H 0.112 0.888 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.538 0.750 8.145 17.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.320 5.320 3 C -0.027 4.027 4 C -0.091 4.091 5 C -0.146 4.146 6 C -0.137 4.137 7 C -0.136 4.136 8 C -0.020 4.020 9 C -0.028 4.028 10 C -0.222 4.222 11 C -0.133 4.133 12 C -0.025 4.025 13 F -0.134 7.134 14 C 0.062 3.938 15 C -0.466 4.466 16 H 0.115 0.885 17 C -0.135 4.135 18 N -0.422 5.422 19 Si 0.729 3.271 20 H -0.191 1.191 21 H -0.213 1.213 22 H -0.164 1.164 23 C -0.219 4.219 24 C -0.110 4.110 25 H 0.038 0.962 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.161 0.839 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.131 0.869 32 H 0.137 0.863 33 H 0.143 0.857 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.098 0.902 37 H 0.130 0.870 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.187 0.684 7.508 16.956 hybrid contribution -0.141 0.733 1.283 1.484 sum -15.328 1.417 8.791 17.727 Atomic orbital electron populations 1.22207 0.87833 1.01888 1.00303 1.60411 1.07371 1.13874 1.50355 1.20874 0.91022 0.89757 1.01026 1.19568 0.94406 1.01819 0.93294 1.20900 0.94266 1.02598 0.96885 1.20981 0.94055 1.00848 0.97769 1.21452 1.00503 0.99706 0.91893 1.19050 0.92824 0.97254 0.92921 1.18385 0.92763 1.00724 0.90950 1.20259 0.97861 1.13288 0.90770 1.20535 0.92277 1.02533 0.97916 1.17862 0.89421 1.14294 0.80921 1.91313 1.81635 1.94825 1.45676 1.17624 0.94127 0.92285 0.89813 1.19412 0.89481 1.30636 1.07056 0.88548 1.26137 0.94778 0.96346 0.96192 1.69687 1.09758 1.35224 1.27527 0.86436 0.80127 0.80308 0.80227 1.19126 1.21296 1.16422 1.20951 0.92373 1.11667 0.96925 1.21093 0.93147 0.99220 0.97555 0.96230 0.91638 0.91387 0.83936 0.94605 0.90213 0.86944 0.86322 0.85695 0.87382 0.87245 0.90159 0.87021 0.85598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.70 60.07 0.64 0.86 16 2 N -0.69 -7.22 6.84 -122.42 -0.84 -8.06 16 3 C 0.10 1.10 5.81 -4.97 -0.03 1.08 16 4 C -0.09 -1.22 5.39 -104.67 -0.56 -1.79 16 5 C -0.13 -1.66 9.69 -39.52 -0.38 -2.04 16 6 C -0.12 -1.71 10.03 -39.63 -0.40 -2.11 16 7 C -0.12 -2.06 9.42 -39.25 -0.37 -2.43 16 8 C -0.02 -0.38 5.88 -104.90 -0.62 -1.00 16 9 C -0.03 -0.59 5.87 -104.97 -0.62 -1.21 16 10 C -0.20 -4.08 9.43 -38.99 -0.37 -4.45 16 11 C -0.11 -2.40 9.99 -39.64 -0.40 -2.79 16 12 C 0.00 -0.12 7.31 -38.58 -0.28 -0.40 16 13 F -0.16 -3.82 16.76 2.25 0.04 -3.78 16 14 C 0.07 1.67 5.10 -106.80 -0.54 1.12 16 15 C -0.44 -11.95 9.25 -37.78 -0.35 -12.30 16 16 H 0.10 2.80 7.97 -52.49 -0.42 2.39 16 17 C 0.09 2.22 5.41 -17.34 -0.09 2.12 16 18 N -0.80 -20.99 13.93 55.55 0.77 -20.21 16 19 Si 0.90 20.25 24.52 -169.99 -4.17 16.08 16 20 H -0.27 -5.55 6.04 56.52 0.34 -5.21 16 21 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.24 -5.60 6.85 56.52 0.39 -5.21 16 23 C -0.20 -4.71 6.53 -38.55 -0.25 -4.96 16 24 C -0.09 -1.46 9.07 -39.25 -0.36 -1.82 16 25 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.34 3.34 8.81 -39.29 -0.35 2.99 16 29 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 31 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.13 2.30 5.51 -52.49 -0.29 2.01 16 34 H 0.11 1.86 6.18 -52.48 -0.32 1.53 16 35 H 0.11 2.00 8.06 -52.49 -0.42 1.57 16 36 H 0.29 6.79 8.30 -40.82 -0.34 6.45 16 37 H 0.11 2.58 2.96 -52.49 -0.16 2.43 16 38 H 0.13 1.89 6.19 -52.49 -0.32 1.57 16 LS Contribution 317.61 15.07 4.79 4.79 Total: -1.00 -27.76 317.61 -8.83 -36.58 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.44 Total: 6.72 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: -4.97 Total: -32.11 kcal Atomic # 7 Polarization: -28.21 SS G_CDS: -0.06 Total: -28.27 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.04 Total: -3.78 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.17 Total: 16.08 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.76 -8.83 -36.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242997448.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.130 kcal (2) G-P(sol) polarization free energy of solvation -27.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds