Wall clock time and date at job start Tue Mar 31 2020 06:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 111.00111 * 2 1 4 4 C 1.50701 * 109.47089 * 180.02562 * 3 2 1 5 5 C 1.38340 * 119.93963 * 269.97387 * 4 3 2 6 6 C 1.38300 * 120.24561 * 180.02562 * 5 4 3 7 7 C 1.38048 * 120.11931 * 359.76088 * 6 5 4 8 8 C 1.39316 * 119.87732 * 0.51839 * 7 6 5 9 9 C 1.48386 * 120.12107 * 179.74056 * 8 7 6 10 10 C 1.39814 * 119.96513 * 179.74712 * 9 8 7 11 11 C 1.38234 * 120.42560 * 179.97438 * 10 9 8 12 12 C 1.38076 * 120.34451 * 0.02562 * 11 10 9 13 13 F 1.35093 * 120.03897 * 179.97438 * 12 11 10 14 14 C 1.41031 * 119.91494 * 359.67336 * 12 11 10 15 15 C 1.41320 * 120.20915 * 180.30414 * 14 12 11 16 16 H 1.08001 * 119.99766 * 329.91752 * 15 14 12 17 17 C 1.39915 * 120.00362 * 149.90450 * 15 14 12 18 18 N 1.30859 * 119.99960 * 162.20597 * 17 15 14 19 19 Si 1.86792 * 120.00179 * 342.21590 * 17 15 14 20 20 H 1.48498 * 109.47554 * 95.42293 * 19 17 15 21 21 H 1.48501 * 109.47466 * 215.42449 * 19 17 15 22 22 H 1.48501 * 109.47284 * 335.42276 * 19 17 15 23 23 C 1.38672 * 119.96470 * 359.71888 * 9 8 7 24 24 C 1.38000 * 119.93853 * 90.00131 * 4 3 2 25 25 H 1.08997 * 109.46562 * 300.00029 * 1 2 3 26 26 H 1.08999 * 109.46694 * 59.99852 * 1 2 3 27 27 H 1.08991 * 109.47127 * 180.02562 * 1 2 3 28 28 H 1.00896 * 111.00145 * 123.95185 * 2 1 3 29 29 H 1.08995 * 109.47530 * 59.99824 * 3 2 1 30 30 H 1.09006 * 109.46833 * 299.99900 * 3 2 1 31 31 H 1.07998 * 119.88246 * 0.02562 * 5 4 3 32 32 H 1.07998 * 119.94268 * 180.02562 * 6 5 4 33 33 H 1.07999 * 120.05998 * 180.27574 * 7 6 5 34 34 H 1.08003 * 119.79171 * 359.95105 * 10 9 8 35 35 H 1.07994 * 119.82953 * 179.97438 * 11 10 9 36 36 H 0.96996 * 120.00254 * 180.02562 * 18 17 15 37 37 H 1.08001 * 120.17463 * 0.03020 * 23 9 8 38 38 H 1.07995 * 120.06309 * 359.95201 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5020 1.3312 -0.0006 5 6 4.1927 1.3131 1.1979 6 6 5.5752 1.2767 1.2047 7 6 6.2734 1.2532 0.0140 8 6 5.5831 1.2772 -1.1959 9 6 6.3284 1.2580 -2.4789 10 6 5.6322 1.2768 -3.6912 11 6 6.3168 1.2597 -4.8920 12 6 7.6970 1.2232 -4.9076 13 9 8.3598 1.2061 -6.0846 14 6 8.4140 1.2103 -3.6932 15 6 9.8268 1.1795 -3.7019 16 1 10.3514 0.6974 -4.5135 17 6 10.5460 1.7739 -2.6592 18 7 11.8023 1.4608 -2.4693 19 14 9.7128 3.0141 -1.5381 20 1 9.2187 2.3256 -0.3188 21 1 10.6877 4.0657 -1.1520 22 1 8.5696 3.6373 -2.2523 23 6 7.7146 1.2220 -2.4742 24 6 4.1899 1.3130 -1.1968 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8306 -0.5261 0.7813 29 1 1.6460 1.8948 0.8899 30 1 1.6460 1.8948 -0.8901 31 1 3.6504 1.3275 2.1317 32 1 6.1094 1.2623 2.1431 33 1 7.3528 1.2203 0.0204 34 1 4.5525 1.3045 -3.6896 35 1 5.7693 1.2740 -5.8228 36 1 12.3009 1.8726 -1.7463 37 1 8.2541 1.2074 -1.5387 38 1 3.6498 1.3268 -2.1318 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242997448.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:39 Heat of formation + Delta-G solvation = -25.547894 kcal Electronic energy + Delta-G solvation = -21302.155944 eV Core-core repulsion = 18022.199369 eV Total energy + Delta-G solvation = -3279.956575 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.34437 -40.72789 -39.11562 -36.85137 -35.71057 -33.37515 -32.76944 -32.03291 -29.56809 -27.70015 -27.04090 -24.69006 -24.02058 -23.75161 -22.14535 -21.05372 -19.39960 -18.66943 -17.59993 -17.24516 -16.86856 -16.67484 -16.13851 -16.04094 -15.71682 -15.49314 -15.12709 -14.89303 -14.71028 -14.53951 -14.08670 -13.97496 -13.70000 -13.31533 -13.23321 -12.99273 -12.89463 -12.71555 -12.63356 -12.34380 -12.09236 -11.91575 -11.75188 -11.45277 -11.08618 -10.30737 -9.76472 -9.71529 -9.33048 -9.00305 -8.76234 -6.62288 -0.16003 0.46068 0.63607 0.97856 1.18032 1.34432 1.41167 2.03508 2.42121 2.86946 3.32974 3.54702 3.71397 3.80966 3.84479 3.99679 4.16153 4.24547 4.34896 4.47821 4.49828 4.55130 4.62136 4.65173 4.67768 4.74638 4.89325 5.02689 5.09269 5.14384 5.19943 5.36782 5.44165 5.55039 5.59167 5.63960 5.68374 5.93204 6.00433 6.02413 6.11991 6.24229 6.46532 6.54039 6.65196 8.08759 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.019568 B = 0.004872 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.564398 B = 5745.307545 C = 6922.883285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.705 5.705 3 C 0.105 3.895 4 C -0.085 4.085 5 C -0.111 4.111 6 C -0.118 4.118 7 C -0.138 4.138 8 C -0.054 4.054 9 C -0.027 4.027 10 C -0.185 4.185 11 C -0.106 4.106 12 C -0.039 4.039 13 F -0.166 7.166 14 C 0.047 3.953 15 C -0.483 4.483 16 H 0.054 0.946 17 C 0.053 3.947 18 N -0.840 5.840 19 Si 0.955 3.045 20 H -0.243 1.243 21 H -0.270 1.270 22 H -0.256 1.256 23 C -0.211 4.211 24 C -0.093 4.093 25 H 0.031 0.969 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.347 0.653 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.106 0.894 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.298 0.702 37 H 0.111 0.889 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.091 1.444 10.723 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.337 5.337 3 C -0.023 4.023 4 C -0.086 4.086 5 C -0.129 4.129 6 C -0.136 4.136 7 C -0.156 4.156 8 C -0.054 4.054 9 C -0.027 4.027 10 C -0.203 4.203 11 C -0.125 4.125 12 C -0.059 4.059 13 F -0.145 7.145 14 C 0.044 3.956 15 C -0.512 4.512 16 H 0.072 0.928 17 C -0.163 4.163 18 N -0.466 5.466 19 Si 0.777 3.223 20 H -0.168 1.168 21 H -0.196 1.196 22 H -0.180 1.180 23 C -0.230 4.230 24 C -0.111 4.111 25 H 0.050 0.950 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.165 0.835 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.167 0.833 32 H 0.162 0.838 33 H 0.124 0.876 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.108 0.892 37 H 0.129 0.871 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.747 1.364 10.087 22.216 hybrid contribution 0.947 0.442 0.524 1.169 sum -18.800 1.806 10.610 21.663 Atomic orbital electron populations 1.22235 0.86439 1.02586 1.00856 1.60393 1.08777 1.13631 1.50878 1.20860 0.88906 0.90358 1.02178 1.19894 0.96036 1.00059 0.92599 1.21339 0.93722 0.99588 0.98282 1.21278 0.94981 0.99824 0.97542 1.21477 0.99931 1.01129 0.93071 1.18979 0.93961 1.00755 0.91730 1.18796 0.92095 0.98572 0.93230 1.20800 0.99824 1.09910 0.89795 1.20927 0.90879 1.00637 1.00009 1.18274 0.90941 1.16233 0.80408 1.91274 1.82132 1.95120 1.46001 1.17801 0.93613 0.92800 0.91365 1.19315 0.90745 1.33809 1.07376 0.92808 1.26774 0.95199 0.97255 0.97076 1.69708 1.10910 1.36914 1.29064 0.85663 0.78938 0.78523 0.79175 1.16795 1.19630 1.17997 1.21035 0.93702 1.12208 0.96046 1.21214 0.91928 0.98895 0.99097 0.95023 0.91665 0.90714 0.83535 0.92620 0.89984 0.83250 0.83836 0.87582 0.83404 0.83787 0.89171 0.87138 0.84773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.70 127.69 1.37 1.71 16 2 N -0.71 -11.72 6.84 -541.24 -3.70 -15.42 16 3 C 0.11 1.77 5.81 85.56 0.50 2.27 16 4 C -0.09 -1.92 5.39 -19.90 -0.11 -2.03 16 5 C -0.11 -2.31 9.69 22.31 0.22 -2.10 16 6 C -0.12 -2.98 10.03 22.24 0.22 -2.76 16 7 C -0.14 -4.59 9.42 22.48 0.21 -4.38 16 8 C -0.05 -1.90 5.88 -20.04 -0.12 -2.02 16 9 C -0.03 -1.11 5.87 -20.09 -0.12 -1.22 16 10 C -0.18 -6.96 9.43 22.65 0.21 -6.74 16 11 C -0.11 -4.31 9.99 22.23 0.22 -4.09 16 12 C -0.04 -1.93 7.31 22.92 0.17 -1.76 16 13 F -0.17 -8.57 16.76 44.97 0.75 -7.82 16 14 C 0.05 2.53 5.10 -21.27 -0.11 2.43 16 15 C -0.48 -28.51 9.25 23.43 0.22 -28.30 16 16 H 0.05 3.48 7.97 -2.91 -0.02 3.46 16 17 C 0.05 2.89 5.41 85.24 0.46 3.35 16 18 N -0.84 -46.79 13.93 21.82 0.30 -46.49 16 19 Si 0.95 42.91 24.52 68.60 1.68 44.60 16 20 H -0.24 -9.93 6.04 99.48 0.60 -9.32 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.26 -11.98 6.85 99.48 0.68 -11.29 16 23 C -0.21 -10.12 6.53 22.94 0.15 -9.97 16 24 C -0.09 -2.63 9.07 22.48 0.20 -2.42 16 25 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.35 5.23 8.81 -89.70 -0.79 4.44 16 29 H 0.06 0.74 8.08 -2.39 -0.02 0.72 16 30 H 0.08 1.37 8.08 -2.38 -0.02 1.35 16 31 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 32 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 33 H 0.11 3.86 5.51 -2.91 -0.02 3.85 16 34 H 0.15 4.40 6.18 -2.91 -0.02 4.38 16 35 H 0.14 4.82 8.06 -2.91 -0.02 4.79 16 36 H 0.30 14.70 8.30 -92.71 -0.77 13.93 16 37 H 0.11 5.24 2.96 -2.91 -0.01 5.23 16 38 H 0.13 3.46 6.19 -2.91 -0.02 3.44 16 Total: -1.00 -64.95 317.61 2.91 -62.04 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.18 Total: 21.13 kcal Atomic # 6 Polarization: -61.73 SS G_CDS: 3.70 Total: -58.03 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -3.40 Total: -61.91 kcal Atomic # 9 Polarization: -8.57 SS G_CDS: 0.75 Total: -7.82 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.68 Total: 44.60 kcal Total: -64.95 2.91 -62.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242997448.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.489 kcal (2) G-P(sol) polarization free energy of solvation -64.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds