Wall clock time and date at job start Tue Mar 31 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.47248 * 2 1 4 4 N 1.28446 * 125.18896 * 267.11199 * 3 2 1 5 5 C 1.30868 * 110.92868 * 179.97438 * 4 3 2 6 6 C 1.39667 * 107.86360 * 359.77674 * 5 4 3 7 7 C 1.36604 * 125.19215 * 87.10926 * 3 2 1 8 8 C 1.47129 * 126.88036 * 359.96451 * 7 3 2 9 9 O 1.21634 * 120.00489 * 354.89335 * 8 7 3 10 10 N 1.34780 * 119.99522 * 175.16708 * 8 7 3 11 11 C 1.39849 * 119.99914 * 184.24662 * 10 8 7 12 12 C 1.39316 * 119.95089 * 323.21502 * 11 10 8 13 13 C 1.38480 * 120.42294 * 179.72033 * 12 11 10 14 14 C 1.37687 * 120.32658 * 0.55216 * 13 12 11 15 15 C 1.40747 * 119.88613 * 359.72806 * 14 13 12 16 16 C 1.41408 * 120.20579 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00154 * 153.19565 * 16 15 14 18 18 C 1.39942 * 119.99799 * 333.19361 * 16 15 14 19 19 N 1.30831 * 119.99809 * 156.94496 * 18 16 15 20 20 Si 1.86799 * 120.00055 * 336.94589 * 18 16 15 21 21 H 1.48501 * 109.47205 * 94.77983 * 20 18 16 22 22 H 1.48496 * 109.47045 * 214.77991 * 20 18 16 23 23 H 1.48499 * 109.46929 * 334.77821 * 20 18 16 24 24 C 1.38262 * 119.94719 * 143.48874 * 11 10 8 25 25 H 1.09000 * 109.47216 * 59.99374 * 1 2 3 26 26 H 1.08997 * 109.47365 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46614 * 299.99614 * 1 2 3 28 28 H 1.09007 * 109.46550 * 240.00043 * 2 1 3 29 29 H 1.09000 * 109.47216 * 120.00626 * 2 1 3 30 30 H 1.07995 * 126.06510 * 180.02562 * 5 4 3 31 31 H 1.08002 * 127.32036 * 180.25855 * 6 5 4 32 32 H 0.96998 * 120.00151 * 4.25353 * 10 8 7 33 33 H 1.07999 * 119.78271 * 359.97438 * 12 11 10 34 34 H 1.08005 * 119.83490 * 180.27319 * 13 12 11 35 35 H 1.08000 * 120.05303 * 179.74007 * 14 13 12 36 36 H 0.96994 * 120.00148 * 180.02562 * 19 18 16 37 37 H 1.08001 * 120.16241 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3150 2.0614 -1.0484 5 6 2.7220 3.2628 -0.7265 6 6 2.6798 3.3708 0.6654 7 6 2.2278 2.1422 1.1149 8 6 2.0096 1.7390 2.5130 9 8 1.5133 0.6571 2.7636 10 7 2.3545 2.5708 3.5158 11 6 2.2300 2.1532 4.8447 12 6 1.1579 1.3482 5.2233 13 6 1.0282 0.9244 6.5353 14 6 1.9522 1.3037 7.4830 15 6 3.0375 2.1215 7.1164 16 6 3.9907 2.5146 8.0841 17 1 5.0013 2.7477 7.7830 18 6 3.6245 2.6017 9.4319 19 7 4.5377 2.5152 10.3648 20 14 1.8318 2.8413 9.8991 21 1 1.2122 1.5208 10.1779 22 1 1.7461 3.6942 11.1117 23 1 1.1122 3.4993 8.7792 24 6 3.1681 2.5446 5.7819 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.0314 4.0351 -1.4151 31 1 2.9454 4.2298 1.2638 32 1 2.6890 3.4590 3.3159 33 1 0.4254 1.0495 4.4880 34 1 0.1956 0.2969 6.8174 35 1 1.8445 0.9740 8.5057 36 1 4.2839 2.5751 11.2990 37 1 3.9975 3.1720 5.4903 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001543578310.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:50 Heat of formation + Delta-G solvation = 44.283669 kcal Electronic energy + Delta-G solvation = -21494.075980 eV Core-core repulsion = 18237.067490 eV Total energy + Delta-G solvation = -3257.008490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 5.95 seconds Orbital eigenvalues (eV) -43.57193 -41.13993 -39.11481 -36.36423 -35.47508 -35.00055 -32.45915 -32.04028 -30.75110 -30.13098 -27.06271 -25.44609 -24.52987 -23.14876 -22.85024 -22.03637 -20.81524 -19.62514 -19.03071 -17.74215 -17.37936 -17.07264 -16.77885 -16.43676 -15.90482 -15.85729 -15.44774 -15.27870 -14.77347 -14.50265 -14.44486 -13.97937 -13.82227 -13.55280 -13.49459 -13.03232 -12.81931 -12.69098 -12.40564 -12.30359 -12.00361 -11.83327 -11.56642 -11.21591 -11.18772 -10.69397 -10.28751 -10.05187 -9.56637 -8.95709 -8.91239 -6.50062 0.07349 0.78418 0.79285 1.29997 1.33324 1.43507 1.51778 1.64654 2.08059 2.14167 2.16838 2.60387 3.42542 3.54046 3.55284 3.99577 4.07462 4.16902 4.28167 4.30779 4.55387 4.56279 4.62964 4.68106 4.82401 4.83059 4.87259 4.96682 5.00824 5.10643 5.31263 5.52055 5.55615 5.69684 5.73248 5.83229 5.94080 6.18123 6.33347 6.48939 6.70964 6.81407 7.00841 7.08169 8.14921 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.032564 B = 0.003763 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.634517 B = 7438.324014 C = 7950.418625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.109 3.891 3 N -0.263 5.263 4 N -0.294 5.294 5 C -0.003 4.003 6 C -0.177 4.177 7 C -0.059 4.059 8 C 0.586 3.414 9 O -0.547 6.547 10 N -0.643 5.643 11 C 0.174 3.826 12 C -0.230 4.230 13 C -0.069 4.069 14 C -0.260 4.260 15 C 0.089 3.911 16 C -0.484 4.484 17 H 0.061 0.939 18 C 0.055 3.945 19 N -0.839 5.839 20 Si 0.963 3.037 21 H -0.259 1.259 22 H -0.276 1.276 23 H -0.253 1.253 24 C -0.237 4.237 25 H 0.064 0.936 26 H 0.100 0.900 27 H 0.044 0.956 28 H 0.118 0.882 29 H 0.098 0.902 30 H 0.222 0.778 31 H 0.190 0.810 32 H 0.423 0.577 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.100 0.900 36 H 0.295 0.705 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.639 1.390 -17.846 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.010 4.010 3 N -0.051 5.051 4 N -0.127 5.127 5 C -0.178 4.178 6 C -0.206 4.206 7 C -0.187 4.187 8 C 0.373 3.627 9 O -0.425 6.425 10 N -0.289 5.289 11 C 0.081 3.919 12 C -0.250 4.250 13 C -0.088 4.088 14 C -0.279 4.279 15 C 0.086 3.914 16 C -0.512 4.512 17 H 0.079 0.921 18 C -0.162 4.162 19 N -0.465 5.465 20 Si 0.786 3.214 21 H -0.185 1.185 22 H -0.202 1.202 23 H -0.177 1.177 24 C -0.259 4.259 25 H 0.083 0.917 26 H 0.119 0.881 27 H 0.063 0.937 28 H 0.136 0.864 29 H 0.116 0.884 30 H 0.238 0.762 31 H 0.207 0.793 32 H 0.261 0.739 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.117 0.883 36 H 0.106 0.894 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.077 -0.224 -18.375 19.692 hybrid contribution 0.188 0.924 1.290 1.598 sum -6.889 0.700 -17.084 18.434 Atomic orbital electron populations 1.22009 0.92693 1.04540 1.01935 1.22259 0.96848 0.76094 1.05806 1.46047 1.44632 1.12932 1.01517 1.73194 1.17932 1.07694 1.13896 1.24206 1.03569 0.94631 0.95423 1.22737 1.04696 0.96877 0.96313 1.21279 1.13409 0.95284 0.88727 1.17222 0.77844 0.83856 0.83752 1.90780 1.43828 1.23171 1.84721 1.42952 1.64434 1.18248 1.03228 1.17444 0.94458 0.97751 0.82277 1.20677 1.00386 1.07767 0.96216 1.20822 0.97686 0.97626 0.92641 1.21188 1.00788 1.06914 0.99048 1.17604 0.91403 0.89767 0.92609 1.19429 0.97779 1.42536 0.91505 0.92106 1.26797 1.03506 0.90227 0.95645 1.69752 1.38478 1.35354 1.02881 0.85547 0.78167 0.79444 0.78233 1.18496 1.20195 1.17685 1.20851 1.01462 1.09865 0.93675 0.91680 0.88104 0.93718 0.86377 0.88392 0.76176 0.79284 0.73877 0.86434 0.85651 0.88272 0.89424 0.86709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 10.24 71.98 0.74 -2.24 16 2 C 0.11 2.34 6.37 86.38 0.55 2.89 16 3 N -0.26 -6.58 3.35 -334.69 -1.12 -7.70 16 4 N -0.29 -6.91 11.90 -57.14 -0.68 -7.59 16 5 C 0.00 -0.06 12.03 85.18 1.02 0.96 16 6 C -0.18 -3.46 10.50 22.66 0.24 -3.23 16 7 C -0.06 -1.54 6.96 40.78 0.28 -1.26 16 8 C 0.59 18.55 7.62 86.58 0.66 19.21 16 9 O -0.55 -20.20 12.09 -4.14 -0.05 -20.25 16 10 N -0.64 -20.15 5.31 -306.85 -1.63 -21.78 16 11 C 0.17 7.00 6.25 38.13 0.24 7.23 16 12 C -0.23 -9.58 8.69 22.59 0.20 -9.39 16 13 C -0.07 -2.94 10.01 22.20 0.22 -2.72 16 14 C -0.26 -12.36 7.37 22.75 0.17 -12.19 16 15 C 0.09 4.50 5.14 -21.31 -0.11 4.39 16 16 C -0.48 -26.51 9.54 23.46 0.22 -26.29 16 17 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 18 C 0.05 2.86 5.35 85.25 0.46 3.31 16 19 N -0.84 -45.00 13.93 21.83 0.30 -44.69 16 20 Si 0.96 41.87 24.63 68.60 1.69 43.56 16 21 H -0.26 -10.79 6.60 99.48 0.66 -10.14 16 22 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 23 H -0.25 -11.21 7.05 99.48 0.70 -10.51 16 24 C -0.24 -10.57 9.71 22.85 0.22 -10.35 16 25 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.04 1.09 7.87 -2.39 -0.02 1.07 16 28 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16 29 H 0.10 2.41 6.60 -2.39 -0.02 2.40 16 30 H 0.22 2.23 8.06 -2.91 -0.02 2.20 16 31 H 0.19 2.42 7.58 -2.91 -0.02 2.40 16 32 H 0.42 10.09 7.85 -92.71 -0.73 9.37 16 33 H 0.12 4.77 6.34 -2.91 -0.02 4.75 16 34 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 35 H 0.10 4.70 4.66 -2.91 -0.01 4.69 16 36 H 0.30 14.16 8.30 -92.71 -0.77 13.39 16 37 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -65.53 313.61 3.95 -61.58 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.33 Total: 26.51 kcal Atomic # 6 Polarization: -34.76 SS G_CDS: 5.11 Total: -29.65 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -3.13 Total: -81.76 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.05 Total: -20.25 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.69 Total: 43.56 kcal Total: -65.53 3.95 -61.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001543578310.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.868 kcal (2) G-P(sol) polarization free energy of solvation -65.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.95 seconds