Wall clock time and date at job start Tue Mar 31 2020 05:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30833 * 125.88689 * 2 1 4 4 N 1.40087 * 108.23329 * 180.25241 * 3 2 1 5 5 C 1.46500 * 126.03497 * 179.74852 * 4 3 2 6 6 C 1.34986 * 107.92976 * 359.71702 * 4 3 2 7 7 Cl 1.73591 * 126.14171 * 179.97438 * 6 4 3 8 8 C 1.35467 * 107.71079 * 0.02562 * 6 4 3 9 9 C 1.50704 * 126.04421 * 180.02562 * 8 6 4 10 10 N 1.46897 * 109.47281 * 90.01983 * 9 8 6 11 11 C 1.46902 * 110.99971 * 169.99533 * 10 9 8 12 12 C 1.50697 * 109.47334 * 284.11697 * 11 10 9 13 13 H 1.07999 * 119.99860 * 4.74976 * 12 11 10 14 14 C 1.37881 * 120.00067 * 184.75597 * 12 11 10 15 15 N 1.31511 * 119.99662 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 120.00031 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47447 * 59.99674 * 16 14 12 18 18 H 1.48501 * 109.47145 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47218 * 299.99695 * 16 14 12 20 20 C 1.46900 * 111.00329 * 293.95501 * 10 9 8 21 21 C 1.52993 * 109.47261 * 168.65330 * 20 10 9 22 22 C 1.53008 * 109.46711 * 288.65219 * 20 10 9 23 23 H 1.08990 * 109.47717 * 270.21631 * 1 2 3 24 24 H 1.09000 * 109.47164 * 30.22594 * 1 2 3 25 25 H 1.09005 * 109.46475 * 150.21570 * 1 2 3 26 26 H 1.08993 * 109.47438 * 269.96210 * 5 4 3 27 27 H 1.09005 * 109.47060 * 29.96527 * 5 4 3 28 28 H 1.09005 * 109.46759 * 149.95693 * 5 4 3 29 29 H 1.08997 * 109.47053 * 330.01562 * 9 8 6 30 30 H 1.09005 * 109.46529 * 210.02030 * 9 8 6 31 31 H 1.09000 * 109.47090 * 44.11732 * 11 10 9 32 32 H 1.08999 * 109.47060 * 164.11562 * 11 10 9 33 33 H 0.97002 * 119.99850 * 180.02562 * 15 14 12 34 34 H 1.08995 * 109.46946 * 48.64444 * 20 10 9 35 35 H 1.08997 * 109.47538 * 58.49714 * 21 20 10 36 36 H 1.08997 * 109.47140 * 178.49682 * 21 20 10 37 37 H 1.09004 * 109.47230 * 298.49116 * 21 20 10 38 38 H 1.09003 * 109.46981 * 59.99761 * 22 20 10 39 39 H 1.08996 * 109.46815 * 180.02562 * 22 20 10 40 40 H 1.09002 * 109.46731 * 299.99731 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2739 1.0600 0.0000 4 7 3.6088 0.6352 -0.0059 5 6 4.7893 1.5027 -0.0130 6 6 3.6154 -0.7147 -0.0030 7 17 5.0221 -1.7317 -0.0086 8 6 2.3269 -1.1330 0.0038 9 6 1.8598 -2.5658 0.0096 10 7 1.7138 -3.0277 1.3964 11 6 1.0384 -4.3312 1.4487 12 6 -0.4366 -4.1430 1.2041 13 1 -0.8217 -3.1661 0.9517 14 6 -1.2945 -5.2179 1.3027 15 7 -0.8254 -6.4075 1.6098 16 14 -3.1229 -4.9843 1.0003 17 1 -3.3360 -4.4807 -0.3805 18 1 -3.8221 -6.2839 1.1660 19 1 -3.6644 -4.0027 1.9742 20 6 3.0165 -3.0822 2.0731 21 6 2.8033 -3.2889 3.5739 22 6 3.8358 -4.2450 1.5094 23 1 -0.3634 0.0039 1.0275 24 1 -0.3633 0.8879 -0.5173 25 1 -0.3632 -0.8920 -0.5105 26 1 5.0775 1.7157 -1.0424 27 1 4.5574 2.4361 0.4999 28 1 5.6114 1.0018 0.4983 29 1 2.5912 -3.1884 -0.5057 30 1 0.8989 -2.6367 -0.5002 31 1 1.4530 -4.9863 0.6825 32 1 1.1895 -4.7796 2.4307 33 1 -1.4289 -7.1638 1.6788 34 1 3.5513 -2.1470 1.9074 35 1 2.2452 -4.2106 3.7382 36 1 3.7702 -3.3559 4.0725 37 1 2.2425 -2.4472 3.9806 38 1 3.9876 -4.0977 0.4401 39 1 4.8021 -4.2857 2.0119 40 1 3.3009 -5.1802 1.6751 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042528662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:20 Heat of formation + Delta-G solvation = 54.783245 kcal Electronic energy + Delta-G solvation = -21508.744720 eV Core-core repulsion = 18385.591771 eV Total energy + Delta-G solvation = -3123.152949 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.41887 -39.22735 -37.93015 -35.11140 -34.76921 -32.94785 -31.49318 -30.40603 -28.76923 -27.95060 -26.88423 -25.13928 -24.12048 -21.78667 -21.09386 -19.89993 -18.55417 -17.76876 -17.08884 -16.54693 -16.32025 -16.05551 -15.40493 -15.33475 -14.80327 -14.31452 -14.21925 -14.01311 -13.93830 -13.69977 -13.45156 -13.18122 -13.10115 -12.94045 -12.82932 -12.66873 -12.65003 -12.56075 -12.21495 -12.17750 -11.97638 -11.94100 -11.47431 -11.18245 -11.14766 -10.46611 -10.10713 -9.44058 -8.78674 -8.07315 -6.15362 0.39972 0.56557 1.47644 1.50175 1.55318 1.57518 1.70973 2.49335 3.24150 3.38202 3.56874 4.01964 4.04652 4.15949 4.31659 4.33585 4.35455 4.46711 4.60094 4.60807 4.72726 4.80815 4.85519 4.90072 4.96888 5.03928 5.07661 5.09554 5.11642 5.26363 5.42532 5.46453 5.52038 5.59826 5.76793 5.80628 6.23676 6.53353 6.56306 6.80968 7.00998 7.53255 9.02467 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.019175 B = 0.005923 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.866839 B = 4726.304668 C = 5704.750624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.092 3.908 3 N -0.296 5.296 4 N -0.368 5.368 5 C 0.089 3.911 6 C 0.121 3.879 7 Cl 0.011 6.989 8 C -0.206 4.206 9 C 0.142 3.858 10 N -0.527 5.527 11 C 0.212 3.788 12 C -0.512 4.512 13 H 0.065 0.935 14 C 0.003 3.997 15 N -0.937 5.937 16 Si 0.960 3.040 17 H -0.267 1.267 18 H -0.289 1.289 19 H -0.270 1.270 20 C 0.073 3.927 21 C -0.135 4.135 22 C -0.173 4.173 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.029 0.971 30 H 0.073 0.927 31 H -0.037 1.037 32 H 0.014 0.986 33 H 0.260 0.740 34 H 0.079 0.921 35 H 0.037 0.963 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.346 13.736 -3.275 18.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 N -0.120 5.120 4 N -0.153 5.153 5 C -0.051 4.051 6 C -0.034 4.034 7 Cl 0.039 6.961 8 C -0.219 4.219 9 C 0.013 3.987 10 N -0.251 5.251 11 C 0.086 3.914 12 C -0.551 4.551 13 H 0.083 0.917 14 C -0.194 4.194 15 N -0.578 5.578 16 Si 0.785 3.215 17 H -0.191 1.191 18 H -0.215 1.215 19 H -0.195 1.195 20 C -0.035 4.035 21 C -0.192 4.192 22 C -0.231 4.231 23 H 0.098 0.902 24 H 0.106 0.894 25 H 0.096 0.904 26 H 0.112 0.888 27 H 0.124 0.876 28 H 0.121 0.879 29 H 0.047 0.953 30 H 0.091 0.909 31 H -0.020 1.020 32 H 0.032 0.968 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.314 15.185 -2.995 19.779 hybrid contribution -0.197 -2.024 -0.451 2.082 sum 12.118 13.161 -3.446 18.219 Atomic orbital electron populations 1.20219 0.85080 1.03726 1.03669 1.22379 0.98019 0.89285 0.97635 1.77379 0.85860 1.21757 1.27052 1.48748 1.06690 1.02679 1.57183 1.22284 0.82604 0.94978 1.05198 1.21475 0.90291 0.84470 1.07173 1.98390 1.37207 1.63731 1.96790 1.19667 0.90135 0.96986 1.15108 1.20107 0.99693 0.88637 0.90270 1.62271 1.19034 1.29292 1.14455 1.19363 0.92866 0.84752 0.94443 1.21520 0.93030 0.94906 1.45629 0.91676 1.25801 1.03342 0.94855 0.95445 1.70082 1.36667 1.00559 1.50493 0.85577 0.79736 0.77036 0.79119 1.19150 1.21523 1.19480 1.21755 0.89540 0.97696 0.94542 1.21769 1.01276 1.01088 0.95110 1.22384 1.00527 0.99076 1.01155 0.90230 0.89387 0.90372 0.88753 0.87568 0.87933 0.95286 0.90862 1.01981 0.96826 0.93095 0.90257 0.94405 0.90819 0.93129 0.92852 0.91071 0.94600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.00 10.26 71.24 0.73 -1.27 16 2 C 0.09 3.01 7.22 43.10 0.31 3.32 16 3 N -0.30 -9.14 12.57 -47.39 -0.60 -9.74 16 4 N -0.37 -9.72 4.01 -359.26 -1.44 -11.16 16 5 C 0.09 1.37 11.31 127.77 1.44 2.82 16 6 C 0.12 3.51 6.39 83.57 0.53 4.05 16 7 Cl 0.01 0.26 24.57 -2.72 -0.07 0.20 16 8 C -0.21 -7.03 5.02 -20.11 -0.10 -7.14 16 9 C 0.14 5.54 4.81 85.56 0.41 5.95 16 10 N -0.53 -22.57 4.35 -880.07 -3.83 -26.40 16 11 C 0.21 11.01 3.31 85.56 0.28 11.29 16 12 C -0.51 -28.39 8.62 25.60 0.22 -28.17 16 13 H 0.07 3.50 7.67 -2.91 -0.02 3.48 16 14 C 0.00 0.16 5.46 84.66 0.46 0.63 16 15 N -0.94 -56.15 13.29 21.45 0.28 -55.86 16 16 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 20 C 0.07 2.67 2.46 44.92 0.11 2.78 16 21 C -0.13 -4.79 9.22 71.98 0.66 -4.13 16 22 C -0.17 -5.95 7.66 71.98 0.55 -5.40 16 23 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 24 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.08 2.38 7.25 -2.38 -0.02 2.36 16 26 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.11 1.37 8.14 -2.38 -0.02 1.36 16 28 H 0.10 1.24 7.81 -2.38 -0.02 1.22 16 29 H 0.03 1.13 6.23 -2.39 -0.01 1.12 16 30 H 0.07 3.09 6.44 -2.38 -0.02 3.07 16 31 H -0.04 -2.12 7.33 -2.39 -0.02 -2.13 16 32 H 0.01 0.78 5.88 -2.39 -0.01 0.76 16 33 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 34 H 0.08 2.69 4.66 -2.39 -0.01 2.68 16 35 H 0.04 1.53 6.26 -2.39 -0.01 1.51 16 36 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.05 1.79 5.50 -2.39 -0.01 1.78 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.03 1.43 6.72 -2.39 -0.02 1.41 16 Total: -1.00 -65.78 328.41 3.04 -62.75 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 1.04 Total: 9.47 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: 5.62 Total: -15.28 kcal Atomic # 7 Polarization: -97.58 SS G_CDS: -5.58 Total: -103.17 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -0.07 Total: 0.20 kcal Total: -65.78 3.04 -62.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042528662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.532 kcal (2) G-P(sol) polarization free energy of solvation -65.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds