Wall clock time and date at job start Tue Mar 31 2020 05:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86794 * 120.00121 * 2 1 4 4 H 1.48506 * 109.47105 * 239.99888 * 3 2 1 5 5 H 1.48498 * 109.47186 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47371 * 119.99710 * 3 2 1 7 7 C 1.38807 * 119.99646 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00075 * 163.87641 * 7 2 1 9 9 N 1.36939 * 120.00503 * 343.87155 * 7 2 1 10 10 C 1.46498 * 120.00300 * 163.28717 * 9 7 2 11 11 C 1.50696 * 109.47159 * 87.40938 * 10 9 7 12 12 N 1.30741 * 126.36565 * 84.45731 * 11 10 9 13 13 N 1.28426 * 110.64647 * 179.97438 * 12 11 10 14 14 N 1.28950 * 110.20365 * 359.70810 * 13 12 11 15 15 N 1.35072 * 126.35959 * 264.45645 * 11 10 9 16 16 C 1.40259 * 127.38926 * 0.02562 * 15 11 10 17 17 C 1.38825 * 120.06549 * 136.66997 * 16 15 11 18 18 C 1.38120 * 119.93253 * 179.97438 * 17 16 15 19 19 C 1.38276 * 120.07068 * 359.97438 * 18 17 16 20 20 C 1.38279 * 120.12719 * 0.02562 * 19 18 17 21 21 C 1.38133 * 120.06314 * 359.97438 * 20 19 18 22 22 C 1.46499 * 119.99519 * 343.28632 * 9 7 2 23 23 C 1.53006 * 117.49715 * 183.51609 * 22 9 7 24 24 C 1.53006 * 60.00095 * 252.51372 * 23 22 9 25 25 H 0.97001 * 119.99472 * 5.05267 * 1 2 3 26 26 H 1.09002 * 109.47084 * 327.40595 * 10 9 7 27 27 H 1.08994 * 109.47162 * 207.40756 * 10 9 7 28 28 H 1.07996 * 120.03214 * 359.97438 * 17 16 15 29 29 H 1.08003 * 119.96309 * 179.97438 * 18 17 16 30 30 H 1.07992 * 119.93771 * 179.74507 * 19 18 17 31 31 H 1.07993 * 119.96828 * 180.02562 * 20 19 18 32 32 H 1.08002 * 120.03111 * 180.02562 * 21 20 19 33 33 H 1.09001 * 115.55515 * 329.22695 * 22 9 7 34 34 H 1.08998 * 117.50077 * 359.97438 * 23 22 9 35 35 H 1.08998 * 117.49652 * 145.02526 * 23 22 9 36 36 H 1.09009 * 117.49448 * 252.51407 * 24 23 22 37 37 H 1.08997 * 117.52079 * 107.48054 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0584 -1.2207 -0.2592 9 7 1.3660 -2.3646 0.3305 10 6 1.9652 -3.6568 -0.0120 11 6 2.8943 -4.0884 1.0932 12 7 2.5568 -4.7192 2.1876 13 7 3.5885 -4.9386 2.9202 14 7 4.6473 -4.4742 2.3491 15 7 4.2304 -3.8955 1.1372 16 6 5.0312 -3.2599 0.1770 17 6 6.0183 -2.3683 0.5745 18 6 6.8057 -1.7443 -0.3733 19 6 6.6120 -2.0072 -1.7169 20 6 5.6296 -2.8949 -2.1159 21 6 4.8391 -3.5219 -1.1725 22 6 0.0776 -2.3159 1.0260 23 6 -0.5524 -3.6473 1.4402 24 6 -1.1483 -2.8472 0.2802 25 1 -0.4849 0.8368 -0.0740 26 1 2.5259 -3.5623 -0.9419 27 1 1.1783 -4.4007 -0.1363 28 1 6.1703 -2.1628 1.6238 29 1 7.5734 -1.0502 -0.0646 30 1 7.2261 -1.5150 -2.4564 31 1 5.4809 -3.0987 -3.1659 32 1 4.0722 -4.2154 -1.4847 33 1 -0.0672 -1.4625 1.6885 34 1 -0.0084 -4.5594 1.1949 35 1 -1.1116 -3.6700 2.3756 36 1 -2.0996 -2.3435 0.4525 37 1 -0.9961 -3.2324 -0.7280 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063516230.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:40 Heat of formation + Delta-G solvation = 208.895653 kcal Electronic energy + Delta-G solvation = -22720.477990 eV Core-core repulsion = 19502.900362 eV Total energy + Delta-G solvation = -3217.577628 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.59827 -39.25488 -37.28371 -34.76730 -33.28704 -32.48308 -31.03989 -30.59299 -29.78663 -26.81496 -24.28649 -23.82558 -22.84631 -21.68128 -21.15054 -21.12427 -19.60389 -18.06738 -17.19536 -16.37488 -16.22633 -15.11911 -14.86339 -14.68879 -14.50819 -14.31169 -13.78576 -13.60497 -13.43267 -13.03204 -12.51289 -12.29714 -11.72342 -11.63007 -11.54710 -11.36058 -11.14064 -10.94387 -10.67276 -10.52894 -10.36121 -10.27031 -10.15581 -9.83391 -9.57470 -9.12763 -9.03140 -8.63503 -8.61778 -7.04574 -5.97527 -3.41815 0.81177 1.29470 1.75855 2.25655 2.83697 3.24439 3.31560 3.32827 3.64575 4.27033 4.53651 4.72040 4.80927 4.96511 5.06707 5.07164 5.14387 5.28357 5.31320 5.37040 5.56176 5.71118 5.92407 5.94474 6.01475 6.09580 6.13360 6.17386 6.24500 6.36038 6.40296 6.51124 6.62793 6.65729 6.96230 7.04420 7.18356 7.42380 7.61972 8.03717 8.94404 8.98985 9.52728 9.97176 11.06846 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.012045 B = 0.008895 C = 0.006039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.147142 B = 3147.034440 C = 4635.648883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.020 3.980 3 Si 0.903 3.097 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.281 4.281 8 H 0.075 0.925 9 N -0.539 5.539 10 C 0.203 3.797 11 C 0.261 3.739 12 N -0.334 5.334 13 N -0.048 5.048 14 N -0.107 5.107 15 N -0.334 5.334 16 C 0.147 3.853 17 C -0.097 4.097 18 C -0.105 4.105 19 C -0.113 4.113 20 C -0.099 4.099 21 C -0.108 4.108 22 C 0.195 3.805 23 C -0.233 4.233 24 C -0.190 4.190 25 H 0.259 0.741 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.937 -4.365 -5.093 11.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.181 4.181 3 Si 0.732 3.268 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.409 4.409 8 H 0.092 0.908 9 N -0.255 5.255 10 C 0.069 3.931 11 C -0.019 4.019 12 N -0.185 5.185 13 N -0.043 5.043 14 N -0.092 5.092 15 N -0.125 5.125 16 C 0.055 3.945 17 C -0.117 4.117 18 C -0.124 4.124 19 C -0.131 4.131 20 C -0.117 4.117 21 C -0.128 4.128 22 C 0.087 3.913 23 C -0.271 4.271 24 C -0.230 4.230 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.109 0.891 28 H 0.149 0.851 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.129 0.871 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.015 -4.788 -3.738 10.871 hybrid contribution 0.382 1.471 -0.664 1.659 sum 9.397 -3.317 -4.402 10.894 Atomic orbital electron populations 1.70023 1.04976 1.26120 1.51531 1.24911 0.95419 0.98110 0.99649 0.86364 0.79068 0.83068 0.78316 1.20570 1.21281 1.20876 1.19096 0.93306 0.83891 1.44594 0.90764 1.43544 1.19145 0.99536 1.63276 1.19739 0.93073 0.90699 0.89581 1.28617 0.83039 0.91053 0.99165 1.74438 1.21516 1.19794 1.02762 1.77908 0.93214 1.12816 1.20328 1.82489 1.19503 1.14427 0.92793 1.48966 1.06782 1.40696 1.16105 1.17390 0.94413 0.96050 0.86615 1.21024 0.94952 0.94804 1.00925 1.21034 0.99301 0.99304 0.92722 1.21267 0.98078 0.97738 0.96030 1.20991 0.94936 0.96427 0.99395 1.21080 1.00213 1.01033 0.90509 1.20704 0.82436 0.92554 0.95561 1.23536 1.06659 0.97799 0.99128 1.23024 1.00351 1.04712 0.94923 0.93074 0.90005 0.89075 0.85112 0.85057 0.85337 0.84771 0.84806 0.87089 0.89541 0.90329 0.90497 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.56 10.66 55.49 0.59 -22.97 16 2 C 0.02 0.52 5.14 -17.43 -0.09 0.43 16 3 Si 0.90 20.60 29.59 -169.99 -5.03 15.57 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.28 -7.03 9.71 -15.06 -0.15 -7.17 16 8 H 0.07 1.83 7.75 -52.49 -0.41 1.42 16 9 N -0.54 -12.43 2.85 -167.02 -0.48 -12.91 16 10 C 0.20 3.89 5.43 -5.20 -0.03 3.87 16 11 C 0.26 5.19 7.54 -155.19 -1.17 4.02 16 12 N -0.33 -7.06 12.15 32.75 0.40 -6.66 16 13 N -0.05 -1.01 13.39 60.35 0.81 -0.20 16 14 N -0.11 -2.15 13.84 60.35 0.84 -1.32 16 15 N -0.33 -6.33 3.74 -7.97 -0.03 -6.36 16 16 C 0.15 2.42 6.13 -83.57 -0.51 1.90 16 17 C -0.10 -1.45 9.90 -39.41 -0.39 -1.84 16 18 C -0.10 -1.26 10.04 -39.61 -0.40 -1.66 16 19 C -0.11 -1.23 10.04 -39.55 -0.40 -1.63 16 20 C -0.10 -1.13 10.04 -39.60 -0.40 -1.53 16 21 C -0.11 -1.50 8.45 -39.41 -0.33 -1.83 16 22 C 0.19 4.52 4.52 -67.92 -0.31 4.21 16 23 C -0.23 -4.64 9.71 -26.73 -0.26 -4.90 16 24 C -0.19 -3.98 10.14 -26.72 -0.27 -4.25 16 25 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 26 H 0.08 1.43 4.97 -51.93 -0.26 1.17 16 27 H 0.09 1.63 6.06 -51.93 -0.31 1.32 16 28 H 0.13 1.97 8.06 -52.49 -0.42 1.54 16 29 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 30 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.13 1.70 6.44 -52.49 -0.34 1.36 16 33 H 0.11 2.90 7.01 -51.93 -0.36 2.54 16 34 H 0.09 1.67 6.22 -51.93 -0.32 1.35 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.08 1.59 8.14 -51.92 -0.42 1.17 16 37 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 LS Contribution 317.74 15.07 4.79 4.79 Total: -1.00 -29.11 317.74 -6.91 -36.02 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -4.10 Total: 4.43 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -4.70 Total: -10.38 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 2.13 Total: -50.42 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.11 -6.91 -36.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063516230.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.916 kcal (2) G-P(sol) polarization free energy of solvation -29.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 215.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 208.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds