Wall clock time and date at job start Tue Mar 31 2020 05:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86794 * 120.00121 * 2 1 4 4 H 1.48506 * 109.47105 * 239.99888 * 3 2 1 5 5 H 1.48498 * 109.47186 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47371 * 119.99710 * 3 2 1 7 7 C 1.38807 * 119.99646 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00075 * 163.87641 * 7 2 1 9 9 N 1.36939 * 120.00503 * 343.87155 * 7 2 1 10 10 C 1.46498 * 120.00300 * 163.28717 * 9 7 2 11 11 C 1.50696 * 109.47159 * 87.40938 * 10 9 7 12 12 N 1.30741 * 126.36565 * 84.45731 * 11 10 9 13 13 N 1.28426 * 110.64647 * 179.97438 * 12 11 10 14 14 N 1.28950 * 110.20365 * 359.70810 * 13 12 11 15 15 N 1.35072 * 126.35959 * 264.45645 * 11 10 9 16 16 C 1.40259 * 127.38926 * 0.02562 * 15 11 10 17 17 C 1.38825 * 120.06549 * 136.66997 * 16 15 11 18 18 C 1.38120 * 119.93253 * 179.97438 * 17 16 15 19 19 C 1.38276 * 120.07068 * 359.97438 * 18 17 16 20 20 C 1.38279 * 120.12719 * 0.02562 * 19 18 17 21 21 C 1.38133 * 120.06314 * 359.97438 * 20 19 18 22 22 C 1.46499 * 119.99519 * 343.28632 * 9 7 2 23 23 C 1.53006 * 117.49715 * 183.51609 * 22 9 7 24 24 C 1.53006 * 60.00095 * 252.51372 * 23 22 9 25 25 H 0.97001 * 119.99472 * 5.05267 * 1 2 3 26 26 H 1.09002 * 109.47084 * 327.40595 * 10 9 7 27 27 H 1.08994 * 109.47162 * 207.40756 * 10 9 7 28 28 H 1.07996 * 120.03214 * 359.97438 * 17 16 15 29 29 H 1.08003 * 119.96309 * 179.97438 * 18 17 16 30 30 H 1.07992 * 119.93771 * 179.74507 * 19 18 17 31 31 H 1.07993 * 119.96828 * 180.02562 * 20 19 18 32 32 H 1.08002 * 120.03111 * 180.02562 * 21 20 19 33 33 H 1.09001 * 115.55515 * 329.22695 * 22 9 7 34 34 H 1.08998 * 117.50077 * 359.97438 * 23 22 9 35 35 H 1.08998 * 117.49652 * 145.02526 * 23 22 9 36 36 H 1.09009 * 117.49448 * 252.51407 * 24 23 22 37 37 H 1.08997 * 117.52079 * 107.48054 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0584 -1.2207 -0.2592 9 7 1.3660 -2.3646 0.3305 10 6 1.9652 -3.6568 -0.0120 11 6 2.8943 -4.0884 1.0932 12 7 2.5568 -4.7192 2.1876 13 7 3.5885 -4.9386 2.9202 14 7 4.6473 -4.4742 2.3491 15 7 4.2304 -3.8955 1.1372 16 6 5.0312 -3.2599 0.1770 17 6 6.0183 -2.3683 0.5745 18 6 6.8057 -1.7443 -0.3733 19 6 6.6120 -2.0072 -1.7169 20 6 5.6296 -2.8949 -2.1159 21 6 4.8391 -3.5219 -1.1725 22 6 0.0776 -2.3159 1.0260 23 6 -0.5524 -3.6473 1.4402 24 6 -1.1483 -2.8472 0.2802 25 1 -0.4849 0.8368 -0.0740 26 1 2.5259 -3.5623 -0.9419 27 1 1.1783 -4.4007 -0.1363 28 1 6.1703 -2.1628 1.6238 29 1 7.5734 -1.0502 -0.0646 30 1 7.2261 -1.5150 -2.4564 31 1 5.4809 -3.0987 -3.1659 32 1 4.0722 -4.2154 -1.4847 33 1 -0.0672 -1.4625 1.6885 34 1 -0.0084 -4.5594 1.1949 35 1 -1.1116 -3.6700 2.3756 36 1 -2.0996 -2.3435 0.4525 37 1 -0.9961 -3.2324 -0.7280 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063516230.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:39 Heat of formation + Delta-G solvation = 193.456553 kcal Electronic energy + Delta-G solvation = -22721.147480 eV Core-core repulsion = 19502.900362 eV Total energy + Delta-G solvation = -3218.247117 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.13158 -40.31444 -38.98635 -36.12247 -34.99269 -34.17807 -32.30196 -32.04036 -30.98429 -28.46525 -25.81941 -25.43299 -24.04974 -22.98119 -22.76257 -22.56506 -21.31485 -19.35503 -18.95102 -17.73547 -17.38949 -16.84135 -16.49904 -16.11339 -15.94504 -15.49002 -15.35829 -15.03474 -14.58891 -14.50618 -13.88980 -13.70018 -13.42515 -13.22675 -12.91058 -12.77740 -12.62641 -12.49796 -12.19930 -12.07717 -12.04913 -11.93992 -11.71649 -11.54434 -11.21370 -10.86827 -10.49375 -10.02487 -9.73180 -8.85784 -7.88616 -5.33784 -0.46222 0.31339 0.46108 0.87009 1.24322 1.43023 1.47741 1.51580 2.43236 2.64284 3.01068 3.24569 3.37646 3.48554 3.63958 3.76433 3.84552 4.06989 4.17365 4.34177 4.39008 4.41476 4.45489 4.49023 4.51524 4.54946 4.67718 4.81362 4.96322 5.03854 5.26277 5.28792 5.30234 5.45650 5.49315 5.52025 5.54558 5.72939 5.93363 6.17165 7.05625 7.41672 7.69431 8.11762 9.14110 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.012045 B = 0.008895 C = 0.006039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.147142 B = 3147.034440 C = 4635.648883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.028 4.028 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.277 4.277 8 H 0.076 0.924 9 N -0.552 5.552 10 C 0.208 3.792 11 C 0.254 3.746 12 N -0.349 5.349 13 N -0.066 5.066 14 N -0.113 5.113 15 N -0.322 5.322 16 C 0.103 3.897 17 C -0.117 4.117 18 C -0.105 4.105 19 C -0.101 4.101 20 C -0.095 4.095 21 C -0.117 4.117 22 C 0.170 3.830 23 C -0.205 4.205 24 C -0.180 4.180 25 H 0.252 0.748 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.118 0.882 29 H 0.159 0.841 30 H 0.168 0.832 31 H 0.169 0.831 32 H 0.141 0.859 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.523 -4.379 -7.191 13.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.226 4.226 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.406 4.406 8 H 0.094 0.906 9 N -0.269 5.269 10 C 0.076 3.924 11 C -0.026 4.026 12 N -0.201 5.201 13 N -0.060 5.060 14 N -0.098 5.098 15 N -0.114 5.114 16 C 0.013 3.987 17 C -0.138 4.138 18 C -0.123 4.123 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.137 4.137 22 C 0.062 3.938 23 C -0.243 4.243 24 C -0.220 4.220 25 H 0.061 0.939 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.136 0.864 29 H 0.177 0.823 30 H 0.185 0.815 31 H 0.186 0.814 32 H 0.159 0.841 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.636 -4.824 -5.849 13.061 hybrid contribution 0.045 1.459 -0.066 1.461 sum 10.681 -3.365 -5.914 12.664 Atomic orbital electron populations 1.70156 1.05909 1.25927 1.53269 1.25507 0.96086 1.00470 1.00525 0.85554 0.77897 0.80130 0.78227 1.19015 1.22009 1.21854 1.19308 0.93373 0.84763 1.43130 0.90594 1.43576 1.19283 1.00341 1.63696 1.19925 0.93356 0.89346 0.89808 1.28452 0.83661 0.91596 0.98931 1.74350 1.22006 1.20445 1.03262 1.77881 0.93437 1.13783 1.20944 1.82406 1.19461 1.14476 0.93473 1.49042 1.06794 1.39668 1.15876 1.17872 0.95799 0.97956 0.87116 1.21148 0.95718 0.95708 1.01192 1.21417 0.99039 0.98946 0.92891 1.21790 0.97439 0.96470 0.96210 1.21469 0.93949 0.95381 1.00560 1.21326 1.01022 1.01577 0.89788 1.20470 0.83643 0.93065 0.96609 1.23488 1.05148 0.96527 0.99129 1.22944 0.99300 1.04355 0.95352 0.93880 0.88051 0.87675 0.86429 0.82335 0.81467 0.81376 0.84126 0.90889 0.88555 0.89342 0.90677 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.15 10.66 21.65 0.23 -48.92 16 2 C -0.03 -1.44 5.14 84.86 0.44 -1.01 16 3 Si 0.95 42.25 29.59 68.60 2.03 44.28 16 4 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.28 -13.77 9.71 84.03 0.82 -12.95 16 8 H 0.08 3.67 7.75 -2.91 -0.02 3.65 16 9 N -0.55 -25.30 2.85 -682.34 -1.94 -27.24 16 10 C 0.21 7.76 5.43 85.63 0.47 8.23 16 11 C 0.25 9.98 7.54 138.05 1.04 11.02 16 12 N -0.35 -14.74 12.15 -50.29 -0.61 -15.35 16 13 N -0.07 -2.80 13.39 37.02 0.50 -2.31 16 14 N -0.11 -4.58 13.84 37.02 0.51 -4.07 16 15 N -0.32 -12.16 3.74 -179.12 -0.67 -12.83 16 16 C 0.10 3.29 6.13 38.07 0.23 3.53 16 17 C -0.12 -3.40 9.90 22.38 0.22 -3.18 16 18 C -0.10 -2.20 10.04 22.25 0.22 -1.98 16 19 C -0.10 -1.75 10.04 22.29 0.22 -1.52 16 20 C -0.10 -1.81 10.04 22.25 0.22 -1.58 16 21 C -0.12 -2.99 8.45 22.38 0.19 -2.80 16 22 C 0.17 7.92 4.52 45.00 0.20 8.12 16 23 C -0.20 -7.97 9.71 30.60 0.30 -7.67 16 24 C -0.18 -7.42 10.14 30.60 0.31 -7.11 16 25 H 0.25 13.42 8.32 -92.71 -0.77 12.65 16 26 H 0.10 3.36 4.97 -2.39 -0.01 3.35 16 27 H 0.11 3.59 6.06 -2.39 -0.01 3.58 16 28 H 0.12 3.59 8.06 -2.91 -0.02 3.57 16 29 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 30 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 31 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.14 3.27 6.44 -2.91 -0.02 3.26 16 33 H 0.07 3.95 7.01 -2.39 -0.02 3.94 16 34 H 0.10 3.57 6.22 -2.39 -0.01 3.55 16 35 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 36 H 0.07 3.10 8.14 -2.38 -0.02 3.08 16 37 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -63.70 317.74 6.03 -57.67 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 1.10 Total: 17.68 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 4.88 Total: -8.92 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -1.98 Total: -110.71 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -63.70 6.03 -57.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063516230.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 251.126 kcal (2) G-P(sol) polarization free energy of solvation -63.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 187.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 193.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds