Wall clock time and date at job start Tue Mar 31 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31364 * 1 3 3 Si 1.86802 * 119.99896 * 2 1 4 4 H 1.48501 * 109.46975 * 240.00170 * 3 2 1 5 5 H 1.48499 * 109.46962 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46831 * 120.00462 * 3 2 1 7 7 C 1.39050 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99415 * 162.73201 * 7 2 1 9 9 N 1.36865 * 120.00030 * 342.73629 * 7 2 1 10 10 C 1.34776 * 120.00096 * 131.37801 * 9 7 2 11 11 O 1.21598 * 120.00285 * 185.45179 * 10 9 7 12 12 C 1.47724 * 120.00205 * 5.45271 * 10 9 7 13 13 C 1.39678 * 120.27281 * 330.37428 * 12 10 9 14 14 C 1.37614 * 119.60904 * 180.15923 * 13 12 10 15 15 C 1.39090 * 120.76107 * 359.96746 * 14 13 12 16 16 C 1.37850 * 119.92006 * 359.74541 * 15 14 13 17 17 C 1.38627 * 119.82672 * 0.43243 * 16 15 14 18 18 C 1.50659 * 122.54422 * 180.83010 * 16 15 14 19 19 C 1.52714 * 110.61619 * 342.00333 * 18 16 15 20 20 C 1.53320 * 108.39855 * 51.11750 * 19 18 16 21 21 C 1.50686 * 117.59842 * 179.43657 * 15 14 13 22 22 C 1.46500 * 120.00257 * 311.37072 * 9 7 2 23 23 C 1.53003 * 117.49425 * 1.33430 * 22 9 7 24 24 C 1.52998 * 59.99938 * 252.50871 * 23 22 9 25 25 H 0.97001 * 120.00139 * 5.04271 * 1 2 3 26 26 H 1.07995 * 120.19538 * 0.18473 * 13 12 10 27 27 H 1.07997 * 119.61544 * 179.97438 * 14 13 12 28 28 H 1.08006 * 119.78533 * 179.67697 * 17 16 15 29 29 H 1.08996 * 109.25198 * 102.30347 * 18 16 15 30 30 H 1.09001 * 109.24369 * 221.71407 * 18 16 15 31 31 H 1.09004 * 109.68258 * 291.39738 * 19 18 16 32 32 H 1.08995 * 109.71102 * 170.86250 * 19 18 16 33 33 H 1.09003 * 109.68642 * 170.39862 * 20 19 18 34 34 H 1.08999 * 109.68149 * 49.84120 * 20 19 18 35 35 H 1.09004 * 109.25398 * 282.43353 * 21 15 14 36 36 H 1.08991 * 109.25512 * 41.85844 * 21 15 14 37 37 H 1.08998 * 115.55317 * 147.03668 * 22 9 7 38 38 H 1.08994 * 117.50316 * 359.97438 * 23 22 9 39 39 H 1.09004 * 117.49752 * 145.01686 * 23 22 9 40 40 H 1.09003 * 117.49630 * 252.51520 * 24 23 22 41 41 H 1.09002 * 117.51789 * 107.48388 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.1013 1.6964 -1.2125 5 1 1.2826 2.7464 0.0006 6 1 3.1014 1.6963 1.2125 7 6 2.0088 -1.2042 -0.0005 8 1 3.0523 -1.2251 -0.2782 9 7 1.3707 -2.3630 0.3507 10 6 1.4845 -3.4575 -0.4274 11 8 0.8398 -4.4559 -0.1704 12 6 2.3925 -3.4443 -1.5926 13 6 2.6505 -2.2507 -2.2707 14 6 3.4960 -2.2547 -3.3565 15 6 4.0969 -3.4333 -3.7859 16 6 3.8511 -4.6136 -3.1174 17 6 2.9982 -4.6224 -2.0246 18 6 4.4843 -5.9200 -3.5201 19 6 5.0222 -5.8397 -4.9470 20 6 5.9011 -4.5888 -5.0631 21 6 4.9997 -3.3582 -4.9900 22 6 0.5641 -2.4136 1.5726 23 6 0.4488 -1.1296 2.3966 24 6 1.2985 -2.2940 2.9094 25 1 -0.4850 0.8368 -0.0738 26 1 2.1896 -1.3301 -1.9446 27 1 3.6953 -1.3320 -3.8811 28 1 2.8020 -5.5484 -1.5046 29 1 5.3045 -6.1469 -2.8390 30 1 3.7393 -6.7135 -3.4611 31 1 4.1914 -5.7708 -5.6493 32 1 5.6159 -6.7270 -5.1666 33 1 6.4312 -4.5995 -6.0155 34 1 6.6189 -4.5671 -4.2432 35 1 4.3911 -3.3044 -5.8927 36 1 5.6180 -2.4633 -4.9204 37 1 -0.3075 -3.0670 1.5338 38 1 0.9735 -0.2474 2.0299 39 1 -0.4988 -0.9381 2.9001 40 1 0.9099 -2.8686 3.7502 41 1 2.3820 -2.1782 2.8798 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067686732.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:09 Heat of formation + Delta-G solvation = 16.733755 kcal Electronic energy + Delta-G solvation = -22663.041065 eV Core-core repulsion = 19508.378265 eV Total energy + Delta-G solvation = -3154.662800 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.77316 -38.52798 -36.24521 -35.30893 -33.18641 -32.15352 -31.54224 -29.61543 -28.42383 -25.25616 -24.00327 -22.65737 -21.87423 -21.28276 -20.83640 -19.64823 -18.77881 -17.23864 -16.21838 -15.49716 -15.11523 -14.82059 -14.70553 -14.21838 -13.86672 -13.78985 -13.72086 -13.31858 -12.97411 -12.66305 -12.49233 -12.21363 -12.06317 -11.86381 -11.49936 -11.21657 -10.97055 -10.92120 -10.84641 -10.82006 -10.49932 -10.42058 -10.25297 -10.08257 -9.66991 -9.31205 -8.81337 -8.47739 -8.13516 -7.87001 -7.29338 -6.44776 -4.20556 1.70139 2.05469 3.04994 3.13448 3.15104 3.79716 3.98493 4.48528 4.62367 4.77900 4.86925 4.90448 4.95384 5.20382 5.33029 5.36360 5.61295 5.66251 5.68628 5.70128 5.89056 5.93730 6.00550 6.02837 6.04612 6.10069 6.15694 6.17030 6.32001 6.34834 6.41784 6.49756 6.60613 6.72621 6.82861 7.00516 7.13113 7.20400 7.30832 7.32429 7.39511 7.67559 7.98449 8.28442 8.93874 9.42221 9.87332 10.56175 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.005524 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.880916 B = 5067.723683 C = 6105.654096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.055 3.945 3 Si 0.901 3.099 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.355 4.355 8 H 0.091 0.909 9 N -0.407 5.407 10 C 0.524 3.476 11 O -0.599 6.599 12 C -0.098 4.098 13 C -0.073 4.073 14 C -0.147 4.147 15 C -0.074 4.074 16 C -0.103 4.103 17 C -0.080 4.080 18 C -0.075 4.075 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.078 4.078 22 C 0.109 3.891 23 C -0.144 4.144 24 C -0.219 4.219 25 H 0.273 0.727 26 H 0.172 0.828 27 H 0.115 0.885 28 H 0.120 0.880 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.635 -3.153 -6.455 11.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.154 4.154 3 Si 0.726 3.274 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.482 4.482 8 H 0.108 0.892 9 N -0.124 5.124 10 C 0.314 3.686 11 O -0.485 6.485 12 C -0.100 4.100 13 C -0.091 4.091 14 C -0.165 4.165 15 C -0.074 4.074 16 C -0.103 4.103 17 C -0.099 4.099 18 C -0.112 4.112 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.115 4.115 22 C 0.004 3.996 23 C -0.181 4.181 24 C -0.258 4.258 25 H 0.083 0.917 26 H 0.189 0.811 27 H 0.133 0.867 28 H 0.138 0.862 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.122 0.878 38 H 0.129 0.871 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.106 -3.471 -6.238 10.801 hybrid contribution 0.313 1.052 0.095 1.102 sum 8.419 -2.420 -6.144 10.699 Atomic orbital electron populations 1.69992 1.06058 1.28189 1.43077 1.25447 0.95187 0.99533 0.95213 0.86419 0.79737 0.81524 0.79700 1.19250 1.20573 1.19382 1.19268 0.95216 0.84232 1.49524 0.89152 1.42595 1.43100 1.09422 1.17269 1.18340 0.83609 0.84116 0.82561 1.90607 1.49119 1.34999 1.73794 1.19894 0.99004 0.93791 0.97351 1.22623 0.94316 1.00241 0.91891 1.21163 1.00044 0.97058 0.98260 1.19645 0.98206 0.92920 0.96638 1.19317 0.99742 0.94382 0.96858 1.21163 0.95441 0.97679 0.95623 1.20379 0.99734 0.94695 0.96358 1.21523 0.99370 0.97676 0.96959 1.21531 0.97784 0.94758 1.01512 1.20446 0.96660 0.98385 0.96005 1.21135 0.95773 1.00595 0.82141 1.23097 0.99708 0.93975 1.01365 1.23369 0.99164 1.04820 0.98411 0.91691 0.81094 0.86721 0.86199 0.91244 0.91173 0.91764 0.91926 0.91961 0.91750 0.91084 0.91156 0.87797 0.87122 0.90643 0.90336 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.14 11.42 55.50 0.63 -20.51 16 2 C 0.06 1.31 2.82 -17.45 -0.05 1.26 16 3 Si 0.90 18.34 29.31 -169.99 -4.98 13.36 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.35 -8.64 5.39 -15.00 -0.08 -8.72 16 8 H 0.09 2.17 6.52 -52.49 -0.34 1.83 16 9 N -0.41 -10.34 2.75 -108.84 -0.30 -10.64 16 10 C 0.52 13.51 7.44 -12.39 -0.09 13.42 16 11 O -0.60 -16.71 16.49 5.28 0.09 -16.63 16 12 C -0.10 -2.20 5.61 -105.08 -0.59 -2.79 16 13 C -0.07 -1.53 7.90 -39.27 -0.31 -1.84 16 14 C -0.15 -2.60 9.58 -39.49 -0.38 -2.98 16 15 C -0.07 -1.19 5.75 -104.45 -0.60 -1.79 16 16 C -0.10 -1.72 5.73 -104.64 -0.60 -2.32 16 17 C -0.08 -1.58 9.16 -39.03 -0.36 -1.94 16 18 C -0.07 -0.98 5.66 -28.05 -0.16 -1.14 16 19 C -0.12 -1.28 5.98 -26.71 -0.16 -1.44 16 20 C -0.12 -1.26 5.98 -26.71 -0.16 -1.42 16 21 C -0.08 -0.96 5.67 -28.03 -0.16 -1.12 16 22 C 0.11 2.62 5.61 -67.93 -0.38 2.24 16 23 C -0.14 -3.15 8.23 -26.73 -0.22 -3.37 16 24 C -0.22 -4.54 10.38 -26.73 -0.28 -4.82 16 25 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 26 H 0.17 3.88 4.92 -52.49 -0.26 3.62 16 27 H 0.11 1.76 8.05 -52.49 -0.42 1.34 16 28 H 0.12 2.35 7.90 -52.48 -0.41 1.93 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 31 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.80 8.12 -51.93 -0.42 0.37 16 37 H 0.10 2.60 7.78 -51.93 -0.40 2.19 16 38 H 0.11 2.58 4.80 -51.93 -0.25 2.34 16 39 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 41 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 LS Contribution 325.91 15.07 4.91 4.91 Total: -1.00 -28.07 325.91 -10.09 -38.16 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.87 Total: 10.10 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -4.57 Total: -18.76 kcal Atomic # 7 Polarization: -31.48 SS G_CDS: 0.33 Total: -31.15 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: 0.09 Total: -16.63 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -4.98 Total: 13.36 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.07 -10.09 -38.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067686732.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.899 kcal (2) G-P(sol) polarization free energy of solvation -28.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds