Wall clock time and date at job start Tue Mar 31 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31364 * 1 3 3 Si 1.86802 * 119.99896 * 2 1 4 4 H 1.48501 * 109.46975 * 240.00170 * 3 2 1 5 5 H 1.48499 * 109.46962 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46831 * 120.00462 * 3 2 1 7 7 C 1.39050 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99415 * 162.73201 * 7 2 1 9 9 N 1.36865 * 120.00030 * 342.73629 * 7 2 1 10 10 C 1.34776 * 120.00096 * 131.37801 * 9 7 2 11 11 O 1.21598 * 120.00285 * 185.45179 * 10 9 7 12 12 C 1.47724 * 120.00205 * 5.45271 * 10 9 7 13 13 C 1.39678 * 120.27281 * 330.37428 * 12 10 9 14 14 C 1.37614 * 119.60904 * 180.15923 * 13 12 10 15 15 C 1.39090 * 120.76107 * 359.96746 * 14 13 12 16 16 C 1.37850 * 119.92006 * 359.74541 * 15 14 13 17 17 C 1.38627 * 119.82672 * 0.43243 * 16 15 14 18 18 C 1.50659 * 122.54422 * 180.83010 * 16 15 14 19 19 C 1.52714 * 110.61619 * 342.00333 * 18 16 15 20 20 C 1.53320 * 108.39855 * 51.11750 * 19 18 16 21 21 C 1.50686 * 117.59842 * 179.43657 * 15 14 13 22 22 C 1.46500 * 120.00257 * 311.37072 * 9 7 2 23 23 C 1.53003 * 117.49425 * 1.33430 * 22 9 7 24 24 C 1.52998 * 59.99938 * 252.50871 * 23 22 9 25 25 H 0.97001 * 120.00139 * 5.04271 * 1 2 3 26 26 H 1.07995 * 120.19538 * 0.18473 * 13 12 10 27 27 H 1.07997 * 119.61544 * 179.97438 * 14 13 12 28 28 H 1.08006 * 119.78533 * 179.67697 * 17 16 15 29 29 H 1.08996 * 109.25198 * 102.30347 * 18 16 15 30 30 H 1.09001 * 109.24369 * 221.71407 * 18 16 15 31 31 H 1.09004 * 109.68258 * 291.39738 * 19 18 16 32 32 H 1.08995 * 109.71102 * 170.86250 * 19 18 16 33 33 H 1.09003 * 109.68642 * 170.39862 * 20 19 18 34 34 H 1.08999 * 109.68149 * 49.84120 * 20 19 18 35 35 H 1.09004 * 109.25398 * 282.43353 * 21 15 14 36 36 H 1.08991 * 109.25512 * 41.85844 * 21 15 14 37 37 H 1.08998 * 115.55317 * 147.03668 * 22 9 7 38 38 H 1.08994 * 117.50316 * 359.97438 * 23 22 9 39 39 H 1.09004 * 117.49752 * 145.01686 * 23 22 9 40 40 H 1.09003 * 117.49630 * 252.51520 * 24 23 22 41 41 H 1.09002 * 117.51789 * 107.48388 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.1013 1.6964 -1.2125 5 1 1.2826 2.7464 0.0006 6 1 3.1014 1.6963 1.2125 7 6 2.0088 -1.2042 -0.0005 8 1 3.0523 -1.2251 -0.2782 9 7 1.3707 -2.3630 0.3507 10 6 1.4845 -3.4575 -0.4274 11 8 0.8398 -4.4559 -0.1704 12 6 2.3925 -3.4443 -1.5926 13 6 2.6505 -2.2507 -2.2707 14 6 3.4960 -2.2547 -3.3565 15 6 4.0969 -3.4333 -3.7859 16 6 3.8511 -4.6136 -3.1174 17 6 2.9982 -4.6224 -2.0246 18 6 4.4843 -5.9200 -3.5201 19 6 5.0222 -5.8397 -4.9470 20 6 5.9011 -4.5888 -5.0631 21 6 4.9997 -3.3582 -4.9900 22 6 0.5641 -2.4136 1.5726 23 6 0.4488 -1.1296 2.3966 24 6 1.2985 -2.2940 2.9094 25 1 -0.4850 0.8368 -0.0738 26 1 2.1896 -1.3301 -1.9446 27 1 3.6953 -1.3320 -3.8811 28 1 2.8020 -5.5484 -1.5046 29 1 5.3045 -6.1469 -2.8390 30 1 3.7393 -6.7135 -3.4611 31 1 4.1914 -5.7708 -5.6493 32 1 5.6159 -6.7270 -5.1666 33 1 6.4312 -4.5995 -6.0155 34 1 6.6189 -4.5671 -4.2432 35 1 4.3911 -3.3044 -5.8927 36 1 5.6180 -2.4633 -4.9204 37 1 -0.3075 -3.0670 1.5338 38 1 0.9735 -0.2474 2.0299 39 1 -0.4988 -0.9381 2.9001 40 1 0.9099 -2.8686 3.7502 41 1 2.3820 -2.1782 2.8798 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067686732.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:08 Heat of formation + Delta-G solvation = 3.508386 kcal Electronic energy + Delta-G solvation = -22663.614560 eV Core-core repulsion = 19508.378265 eV Total energy + Delta-G solvation = -3155.236296 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.32378 -40.14132 -38.04137 -36.68674 -34.97638 -33.43875 -33.38595 -30.98062 -29.69226 -27.14939 -25.38143 -23.88784 -23.23679 -22.98297 -22.44137 -21.34671 -20.18101 -19.02162 -17.90525 -17.05441 -16.68696 -16.42765 -16.11629 -15.73705 -15.49467 -15.23691 -14.91847 -14.66486 -14.49012 -14.17103 -13.95210 -13.72680 -13.39781 -13.32586 -13.11289 -12.76708 -12.68253 -12.28320 -12.19497 -12.12042 -12.08256 -11.67949 -11.56034 -11.31927 -11.18450 -11.13542 -10.70273 -10.33773 -9.63349 -9.32195 -9.18698 -8.29519 -6.11703 0.16628 0.58079 1.42361 1.47112 1.54459 2.04243 2.25901 2.78039 2.86639 3.05694 3.38422 3.82303 3.83592 4.08363 4.11398 4.15118 4.22732 4.30868 4.33959 4.37945 4.44509 4.61543 4.67768 4.72087 4.76185 4.81385 4.95566 5.04985 5.05756 5.11931 5.16317 5.20008 5.23315 5.26892 5.38514 5.46825 5.50706 5.52558 5.66978 5.77270 5.83452 6.08318 6.20079 6.39495 7.05068 7.48887 7.96389 8.72831 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.005524 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.880916 B = 5067.723683 C = 6105.654096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.027 3.973 3 Si 0.964 3.036 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.362 4.362 8 H 0.090 0.910 9 N -0.413 5.413 10 C 0.502 3.498 11 O -0.640 6.640 12 C -0.132 4.132 13 C -0.089 4.089 14 C -0.144 4.144 15 C -0.064 4.064 16 C -0.098 4.098 17 C -0.092 4.092 18 C -0.077 4.077 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.079 4.079 22 C 0.069 3.931 23 C -0.132 4.132 24 C -0.190 4.190 25 H 0.274 0.726 26 H 0.150 0.850 27 H 0.142 0.858 28 H 0.110 0.890 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.368 -2.540 -8.174 14.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.179 4.179 3 Si 0.786 3.214 4 H -0.181 1.181 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.489 4.489 8 H 0.108 0.892 9 N -0.128 5.128 10 C 0.294 3.706 11 O -0.529 6.529 12 C -0.134 4.134 13 C -0.107 4.107 14 C -0.162 4.162 15 C -0.064 4.064 16 C -0.098 4.098 17 C -0.112 4.112 18 C -0.114 4.114 19 C -0.152 4.152 20 C -0.153 4.153 21 C -0.115 4.115 22 C -0.036 4.036 23 C -0.170 4.170 24 C -0.228 4.228 25 H 0.084 0.916 26 H 0.167 0.833 27 H 0.160 0.840 28 H 0.128 0.872 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.126 0.874 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.854 -2.846 -7.951 13.753 hybrid contribution -0.541 0.802 0.579 1.128 sum 10.313 -2.044 -7.372 12.841 Atomic orbital electron populations 1.70106 1.07577 1.29032 1.44038 1.26093 0.95660 1.02053 0.94137 0.85454 0.78544 0.77354 0.80051 1.18092 1.20448 1.19021 1.19400 0.95196 0.84238 1.50073 0.89208 1.42825 1.42704 1.09699 1.17543 1.19058 0.84115 0.83916 0.83553 1.90537 1.50960 1.36268 1.75171 1.19818 1.00515 0.95641 0.97456 1.22366 0.95959 0.98751 0.93663 1.21448 0.98719 0.98999 0.97046 1.20164 0.97326 0.91733 0.97209 1.19755 0.98256 0.96617 0.95210 1.21249 0.96523 0.96423 0.96976 1.20491 0.99941 0.92435 0.98509 1.21545 0.99726 0.99153 0.94777 1.21559 0.97358 0.93380 1.03044 1.20582 0.96565 1.00225 0.94160 1.21245 0.96512 1.02351 0.83513 1.23027 1.00517 0.92965 1.00498 1.23389 0.98869 1.03606 0.96980 0.91569 0.83299 0.84037 0.87168 0.90180 0.91052 0.91838 0.89438 0.89149 0.91879 0.89539 0.89509 0.89955 0.88322 0.89133 0.87372 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.05 11.42 21.68 0.25 -44.81 16 2 C 0.03 1.28 2.82 84.96 0.24 1.52 16 3 Si 0.96 37.43 29.31 68.60 2.01 39.44 16 4 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 5 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.36 -18.18 5.39 84.10 0.45 -17.73 16 8 H 0.09 4.45 6.52 -2.91 -0.02 4.43 16 9 N -0.41 -22.02 2.75 -616.51 -1.69 -23.71 16 10 C 0.50 27.63 7.44 86.75 0.65 28.27 16 11 O -0.64 -38.33 16.49 -4.02 -0.07 -38.40 16 12 C -0.13 -6.24 5.61 -20.16 -0.11 -6.35 16 13 C -0.09 -3.84 7.90 22.47 0.18 -3.66 16 14 C -0.14 -4.92 9.58 22.33 0.21 -4.71 16 15 C -0.06 -1.91 5.75 -19.76 -0.11 -2.03 16 16 C -0.10 -3.19 5.73 -19.88 -0.11 -3.30 16 17 C -0.09 -3.80 9.16 22.63 0.21 -3.59 16 18 C -0.08 -1.84 5.66 29.74 0.17 -1.67 16 19 C -0.11 -2.03 5.98 30.61 0.18 -1.85 16 20 C -0.12 -1.92 5.98 30.61 0.18 -1.73 16 21 C -0.08 -1.60 5.67 29.75 0.17 -1.43 16 22 C 0.07 3.46 5.61 44.99 0.25 3.71 16 23 C -0.13 -5.86 8.23 30.59 0.25 -5.61 16 24 C -0.19 -7.87 10.38 30.59 0.32 -7.55 16 25 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 26 H 0.15 7.03 4.92 -2.91 -0.01 7.01 16 27 H 0.14 3.99 8.05 -2.91 -0.02 3.96 16 28 H 0.11 4.60 7.90 -2.91 -0.02 4.58 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 1.70 8.12 -2.39 -0.02 1.68 16 31 H 0.06 1.16 8.10 -2.38 -0.02 1.14 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.09 1.55 8.12 -2.39 -0.02 1.53 16 37 H 0.08 4.40 7.78 -2.39 -0.02 4.38 16 38 H 0.10 4.63 4.80 -2.39 -0.01 4.62 16 39 H 0.09 3.66 8.14 -2.38 -0.02 3.64 16 40 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 41 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 Total: -1.00 -64.60 325.91 4.64 -59.95 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: 1.03 Total: 35.24 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 3.12 Total: -27.72 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: -1.45 Total: -68.52 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -0.07 Total: -38.40 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.01 Total: 39.44 kcal Total: -64.60 4.64 -59.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067686732.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.461 kcal (2) G-P(sol) polarization free energy of solvation -64.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds