Wall clock time and date at job start Tue Mar 31 2020 05:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99864 * 2 1 4 4 C 1.52997 * 109.46928 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.47108 * 65.00097 * 4 3 2 6 6 C 1.46902 * 110.99844 * 66.04617 * 5 4 3 7 7 C 1.50704 * 109.46858 * 199.44089 * 6 5 4 8 8 H 1.07997 * 120.00134 * 355.23529 * 7 6 5 9 9 C 1.37876 * 119.99693 * 175.23104 * 7 6 5 10 10 N 1.31517 * 119.99361 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00438 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.47139 * 89.99501 * 11 9 7 13 13 H 1.48490 * 109.47337 * 209.99788 * 11 9 7 14 14 H 1.48500 * 109.46719 * 329.99743 * 11 9 7 15 15 C 1.46896 * 111.00033 * 189.99550 * 5 4 3 16 16 C 1.50706 * 109.46978 * 75.64449 * 15 5 4 17 17 C 1.38240 * 119.98375 * 255.03313 * 16 15 5 18 18 C 1.38193 * 120.04580 * 180.22819 * 17 16 15 19 19 C 1.38488 * 120.02382 * 359.79367 * 18 17 16 20 20 F 1.35100 * 120.01045 * 180.02562 * 19 18 17 21 21 C 1.38400 * 119.98086 * 359.97438 * 19 18 17 22 22 C 1.38443 * 119.94536 * 359.97438 * 21 19 18 23 23 F 1.35101 * 120.01176 * 179.97438 * 22 21 19 24 24 H 1.08999 * 109.46548 * 60.00685 * 1 2 3 25 25 H 1.08999 * 109.46714 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47498 * 300.00098 * 1 2 3 27 27 H 1.09004 * 109.47055 * 60.00000 * 3 2 1 28 28 H 1.09001 * 109.46959 * 299.99541 * 3 2 1 29 29 H 1.09003 * 109.47561 * 304.99976 * 4 3 2 30 30 H 1.09001 * 109.47141 * 184.99556 * 4 3 2 31 31 H 1.09003 * 109.47141 * 319.43855 * 6 5 4 32 32 H 1.08999 * 109.47346 * 79.44241 * 6 5 4 33 33 H 0.97000 * 119.99578 * 180.02562 * 10 9 7 34 34 H 1.09004 * 109.47727 * 315.64345 * 15 5 4 35 35 H 1.08999 * 109.47404 * 195.63636 * 15 5 4 36 36 H 1.07990 * 119.97606 * 359.97438 * 17 16 15 37 37 H 1.07994 * 119.98166 * 179.76448 * 18 17 16 38 38 H 1.07999 * 120.02857 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9779 0.5622 -1.2543 6 6 3.6969 1.4347 -2.4023 7 6 3.7067 0.6176 -3.6685 8 1 3.9775 -0.4274 -3.6348 9 6 3.3698 1.2040 -4.8700 10 7 3.3779 0.4907 -5.9749 11 14 2.9020 3.0115 -4.9286 12 1 4.1199 3.8310 -5.1539 13 1 1.9406 3.2384 -6.0372 14 1 2.2739 3.4021 -3.6409 15 6 5.4035 0.2133 -1.1949 16 6 5.5842 -1.0187 -0.3460 17 6 6.0959 -0.9071 0.9334 18 6 6.2665 -2.0365 1.7113 19 6 5.9210 -3.2810 1.2113 20 9 6.0874 -4.3848 1.9722 21 6 5.4042 -3.3933 -0.0676 22 6 5.2327 -2.2611 -0.8456 23 9 4.7288 -2.3692 -2.0945 24 1 -0.3632 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8508 0.5685 0.8427 30 1 3.9784 2.1765 0.0901 31 1 2.7180 1.8974 -2.2760 32 1 4.4601 2.2104 -2.4646 33 1 3.1413 0.9034 -6.8203 34 1 5.9623 1.0409 -0.7578 35 1 5.7721 0.0178 -2.2019 36 1 6.3662 0.0628 1.3238 37 1 6.6698 -1.9486 2.7092 38 1 5.1341 -4.3633 -0.4581 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070142971.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:10 Heat of formation + Delta-G solvation = -97.927231 kcal Electronic energy + Delta-G solvation = -23049.156208 eV Core-core repulsion = 19335.291804 eV Total energy + Delta-G solvation = -3713.864404 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.89632 -48.33741 -38.96252 -37.73606 -36.16753 -32.53904 -31.45639 -30.58244 -29.46950 -27.38585 -25.97024 -24.41314 -23.00088 -22.32608 -21.46071 -19.77404 -17.90851 -17.09145 -16.71952 -16.14798 -15.90598 -15.74932 -15.49572 -15.15436 -14.92311 -14.71832 -14.40610 -14.16526 -13.90062 -13.65246 -13.44145 -13.13974 -12.40113 -12.37274 -12.03192 -11.82907 -11.68822 -11.50740 -11.33123 -11.12218 -10.99163 -10.72778 -10.56479 -10.07269 -9.82981 -9.32691 -9.12239 -8.86631 -8.53820 -8.32952 -7.39928 -5.99850 -3.95952 1.14724 1.22999 3.27082 3.34351 3.35409 3.54046 4.10095 4.20938 4.43419 4.65455 4.70315 4.80462 4.92640 5.04205 5.30550 5.32456 5.40844 5.53614 5.62399 5.70765 5.71900 5.80803 5.90486 5.94099 5.99437 6.01556 6.17021 6.22790 6.23806 6.35621 6.47372 6.79320 6.84829 7.00898 7.56775 7.66481 7.89546 7.98013 8.70621 9.15904 9.61474 11.13540 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.016409 B = 0.005634 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.989862 B = 4968.220248 C = 5692.280029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.367 6.367 3 C 0.066 3.934 4 C 0.053 3.947 5 N -0.510 5.510 6 C 0.158 3.842 7 C -0.501 4.501 8 H 0.087 0.913 9 C 0.068 3.932 10 N -0.899 5.899 11 Si 0.870 3.130 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.269 1.269 15 C 0.098 3.902 16 C -0.110 4.110 17 C -0.064 4.064 18 C -0.173 4.173 19 C 0.118 3.882 20 F -0.140 7.140 21 C -0.200 4.200 22 C 0.167 3.833 23 F -0.107 7.107 24 H 0.039 0.961 25 H 0.080 0.920 26 H 0.030 0.970 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.032 0.968 32 H -0.016 1.016 33 H 0.262 0.738 34 H 0.038 0.962 35 H 0.101 0.899 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.618 -1.186 15.891 16.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.286 6.286 3 C -0.011 4.011 4 C -0.076 4.076 5 N -0.234 5.234 6 C 0.032 3.968 7 C -0.540 4.540 8 H 0.105 0.895 9 C -0.133 4.133 10 N -0.539 5.539 11 Si 0.698 3.302 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.195 1.195 15 C -0.030 4.030 16 C -0.112 4.112 17 C -0.083 4.083 18 C -0.192 4.192 19 C 0.098 3.902 20 F -0.118 7.118 21 C -0.220 4.220 22 C 0.147 3.853 23 F -0.085 7.085 24 H 0.058 0.942 25 H 0.099 0.901 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.002 0.998 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.119 0.881 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.400 -1.804 15.584 15.871 hybrid contribution -0.233 1.717 -0.134 1.738 sum 2.168 -0.087 15.450 15.602 Atomic orbital electron populations 1.22663 0.82378 1.02217 0.99170 1.88020 1.18290 1.27136 1.95113 1.22603 0.93893 0.85237 0.99355 1.22128 0.93627 0.97265 0.94573 1.61895 1.14718 1.44898 1.01855 1.20321 0.95321 0.91574 0.89536 1.21096 1.45128 0.98966 0.88774 0.89466 1.24889 0.95483 0.97238 0.95708 1.69899 1.49477 1.35930 0.98587 0.86954 0.78763 0.86683 0.77801 1.20400 1.21238 1.19455 1.20928 0.90273 0.91770 0.99989 1.20194 1.00337 0.94923 0.95723 1.20760 0.97012 0.98308 0.92193 1.21014 1.05484 0.91017 1.01649 1.17242 1.00898 0.82834 0.89186 1.91488 1.93392 1.51903 1.75047 1.21039 1.06710 0.99892 0.94364 1.17161 0.94511 0.92582 0.81029 1.91663 1.83571 1.96585 1.36642 0.94220 0.90108 0.95158 0.94213 0.92665 0.90869 0.94435 0.94990 0.99815 0.92801 0.94438 0.88053 0.84644 0.84698 0.83858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.37 -6.74 10.65 -35.23 -0.38 -7.11 16 3 C 0.07 1.10 6.02 37.16 0.22 1.32 16 4 C 0.05 0.87 5.17 -3.82 -0.02 0.85 16 5 N -0.51 -10.35 4.29 -237.51 -1.02 -11.37 16 6 C 0.16 3.71 3.68 -4.97 -0.02 3.69 16 7 C -0.50 -14.08 9.07 -34.44 -0.31 -14.39 16 8 H 0.09 2.71 7.66 -52.49 -0.40 2.31 16 9 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 10 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 11 Si 0.87 21.19 27.57 -169.99 -4.69 16.50 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.27 -6.25 6.41 56.52 0.36 -5.89 16 15 C 0.10 1.76 4.62 -4.97 -0.02 1.74 16 16 C -0.11 -1.76 4.82 -104.54 -0.50 -2.26 16 17 C -0.06 -0.80 8.98 -39.60 -0.36 -1.16 16 18 C -0.17 -2.05 10.03 -39.51 -0.40 -2.45 16 19 C 0.12 1.59 7.30 -39.43 -0.29 1.30 16 20 F -0.14 -1.85 17.27 2.25 0.04 -1.81 16 21 C -0.20 -2.97 10.01 -39.45 -0.39 -3.36 16 22 C 0.17 2.90 7.24 -39.43 -0.29 2.62 16 23 F -0.11 -2.24 16.43 2.25 0.04 -2.20 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 1.00 6.08 -51.93 -0.32 0.69 16 29 H 0.07 1.12 6.87 -51.93 -0.36 0.77 16 30 H 0.04 0.56 8.12 -51.93 -0.42 0.14 16 31 H 0.03 0.77 4.54 -51.93 -0.24 0.53 16 32 H -0.02 -0.36 7.67 -51.93 -0.40 -0.76 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.04 0.58 7.81 -51.93 -0.41 0.18 16 35 H 0.10 2.09 7.18 -51.93 -0.37 1.72 16 36 H 0.14 1.34 8.00 -52.49 -0.42 0.92 16 37 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 325.14 15.07 4.90 4.90 Total: -1.00 -31.71 325.14 -6.73 -38.44 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -5.04 Total: -1.88 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -1.36 Total: -8.66 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: -0.25 Total: -38.18 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.38 Total: -7.11 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.08 Total: -4.02 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.69 Total: 16.50 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.71 -6.73 -38.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070142971.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.484 kcal (2) G-P(sol) polarization free energy of solvation -31.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds