Wall clock time and date at job start Tue Mar 31 2020 05:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99864 * 2 1 4 4 C 1.52997 * 109.46928 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.47108 * 65.00097 * 4 3 2 6 6 C 1.46902 * 110.99844 * 66.04617 * 5 4 3 7 7 C 1.50704 * 109.46858 * 199.44089 * 6 5 4 8 8 H 1.07997 * 120.00134 * 355.23529 * 7 6 5 9 9 C 1.37876 * 119.99693 * 175.23104 * 7 6 5 10 10 N 1.31517 * 119.99361 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00438 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.47139 * 89.99501 * 11 9 7 13 13 H 1.48490 * 109.47337 * 209.99788 * 11 9 7 14 14 H 1.48500 * 109.46719 * 329.99743 * 11 9 7 15 15 C 1.46896 * 111.00033 * 189.99550 * 5 4 3 16 16 C 1.50706 * 109.46978 * 75.64449 * 15 5 4 17 17 C 1.38240 * 119.98375 * 255.03313 * 16 15 5 18 18 C 1.38193 * 120.04580 * 180.22819 * 17 16 15 19 19 C 1.38488 * 120.02382 * 359.79367 * 18 17 16 20 20 F 1.35100 * 120.01045 * 180.02562 * 19 18 17 21 21 C 1.38400 * 119.98086 * 359.97438 * 19 18 17 22 22 C 1.38443 * 119.94536 * 359.97438 * 21 19 18 23 23 F 1.35101 * 120.01176 * 179.97438 * 22 21 19 24 24 H 1.08999 * 109.46548 * 60.00685 * 1 2 3 25 25 H 1.08999 * 109.46714 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47498 * 300.00098 * 1 2 3 27 27 H 1.09004 * 109.47055 * 60.00000 * 3 2 1 28 28 H 1.09001 * 109.46959 * 299.99541 * 3 2 1 29 29 H 1.09003 * 109.47561 * 304.99976 * 4 3 2 30 30 H 1.09001 * 109.47141 * 184.99556 * 4 3 2 31 31 H 1.09003 * 109.47141 * 319.43855 * 6 5 4 32 32 H 1.08999 * 109.47346 * 79.44241 * 6 5 4 33 33 H 0.97000 * 119.99578 * 180.02562 * 10 9 7 34 34 H 1.09004 * 109.47727 * 315.64345 * 15 5 4 35 35 H 1.08999 * 109.47404 * 195.63636 * 15 5 4 36 36 H 1.07990 * 119.97606 * 359.97438 * 17 16 15 37 37 H 1.07994 * 119.98166 * 179.76448 * 18 17 16 38 38 H 1.07999 * 120.02857 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9779 0.5622 -1.2543 6 6 3.6969 1.4347 -2.4023 7 6 3.7067 0.6176 -3.6685 8 1 3.9775 -0.4274 -3.6348 9 6 3.3698 1.2040 -4.8700 10 7 3.3779 0.4907 -5.9749 11 14 2.9020 3.0115 -4.9286 12 1 4.1199 3.8310 -5.1539 13 1 1.9406 3.2384 -6.0372 14 1 2.2739 3.4021 -3.6409 15 6 5.4035 0.2133 -1.1949 16 6 5.5842 -1.0187 -0.3460 17 6 6.0959 -0.9071 0.9334 18 6 6.2665 -2.0365 1.7113 19 6 5.9210 -3.2810 1.2113 20 9 6.0874 -4.3848 1.9722 21 6 5.4042 -3.3933 -0.0676 22 6 5.2327 -2.2611 -0.8456 23 9 4.7288 -2.3692 -2.0945 24 1 -0.3632 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8508 0.5685 0.8427 30 1 3.9784 2.1765 0.0901 31 1 2.7180 1.8974 -2.2760 32 1 4.4601 2.2104 -2.4646 33 1 3.1413 0.9034 -6.8203 34 1 5.9623 1.0409 -0.7578 35 1 5.7721 0.0178 -2.2019 36 1 6.3662 0.0628 1.3238 37 1 6.6698 -1.9486 2.7092 38 1 5.1341 -4.3633 -0.4581 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070142971.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:08 Heat of formation + Delta-G solvation = -119.441386 kcal Electronic energy + Delta-G solvation = -23050.089131 eV Core-core repulsion = 19335.291804 eV Total energy + Delta-G solvation = -3714.797328 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -49.96100 -49.79172 -40.18035 -39.01687 -37.58796 -34.64569 -32.71974 -31.69680 -31.02442 -29.03274 -27.15303 -25.85691 -24.23341 -23.90486 -22.70634 -21.29111 -19.14425 -18.94781 -18.06453 -17.43310 -17.25941 -16.95676 -16.70935 -16.54262 -16.22168 -16.17532 -16.06117 -15.41699 -15.24030 -15.07558 -14.74830 -14.47794 -14.33774 -13.67459 -13.56382 -13.16503 -12.98112 -12.76385 -12.66614 -12.55438 -12.48853 -12.19809 -11.96068 -11.77355 -11.57895 -11.36795 -10.74593 -10.42284 -9.98659 -9.52474 -8.89932 -8.21134 -6.22839 0.01730 0.11488 1.34121 1.36817 1.46369 2.37387 2.41127 2.97650 3.01734 3.10207 3.32997 3.57649 3.68711 3.74975 3.98535 4.17122 4.23445 4.33118 4.45474 4.48773 4.56263 4.58270 4.68236 4.77644 4.87251 4.89364 4.92979 4.96606 5.01580 5.06215 5.08722 5.13761 5.36498 5.62871 5.86576 6.06177 6.38507 6.45038 6.75578 6.87278 7.39094 8.96396 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.016409 B = 0.005634 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.989862 B = 4968.220248 C = 5692.280029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.402 6.402 3 C 0.062 3.938 4 C 0.052 3.948 5 N -0.534 5.534 6 C 0.170 3.830 7 C -0.505 4.505 8 H 0.036 0.964 9 C 0.002 3.998 10 N -0.954 5.954 11 Si 0.946 3.054 12 H -0.265 1.265 13 H -0.287 1.287 14 H -0.246 1.246 15 C 0.102 3.898 16 C -0.121 4.121 17 C -0.049 4.049 18 C -0.151 4.151 19 C 0.117 3.883 20 F -0.136 7.136 21 C -0.205 4.205 22 C 0.126 3.874 23 F -0.144 7.144 24 H 0.030 0.970 25 H 0.086 0.914 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.034 0.966 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.034 0.966 32 H -0.007 1.007 33 H 0.263 0.737 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.175 0.825 37 H 0.176 0.824 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.036 1.129 19.742 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.321 6.321 3 C -0.014 4.014 4 C -0.076 4.076 5 N -0.259 5.259 6 C 0.044 3.956 7 C -0.543 4.543 8 H 0.055 0.945 9 C -0.194 4.194 10 N -0.596 5.596 11 Si 0.769 3.231 12 H -0.190 1.190 13 H -0.213 1.213 14 H -0.170 1.170 15 C -0.025 4.025 16 C -0.123 4.123 17 C -0.067 4.067 18 C -0.169 4.169 19 C 0.097 3.903 20 F -0.115 7.115 21 C -0.225 4.225 22 C 0.106 3.894 23 F -0.123 7.123 24 H 0.049 0.951 25 H 0.105 0.895 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.011 0.989 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.193 0.807 37 H 0.193 0.807 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.826 0.504 19.476 19.687 hybrid contribution -0.319 0.836 -1.230 1.521 sum 2.507 1.340 18.246 18.466 Atomic orbital electron populations 1.22816 0.80766 1.03060 1.00169 1.87972 1.20288 1.28490 1.95341 1.22726 0.93894 0.84726 1.00091 1.22274 0.93827 0.98655 0.92826 1.61711 1.16477 1.45083 1.02606 1.20018 0.95540 0.91242 0.88828 1.21356 1.44117 0.97394 0.91470 0.94538 1.25875 0.95540 1.02931 0.95034 1.70091 1.51459 1.38580 0.99453 0.85744 0.78852 0.79782 0.78677 1.19050 1.21269 1.16955 1.20810 0.89379 0.93805 0.98512 1.20173 1.01705 0.93261 0.97131 1.21114 0.95009 1.00372 0.90203 1.21440 1.03036 0.89538 1.02892 1.17362 1.00610 0.83769 0.88514 1.91502 1.93303 1.51998 1.74703 1.21088 1.06931 0.99365 0.95093 1.17614 0.96958 0.94436 0.80415 1.91569 1.84680 1.96853 1.39190 0.95129 0.89523 0.92109 0.90369 0.94808 0.89158 0.91810 0.94805 0.98938 0.92789 0.91174 0.92458 0.80735 0.80653 0.83616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.02 16 2 O -0.40 -14.28 10.65 -148.98 -1.59 -15.87 16 3 C 0.06 1.91 6.02 71.98 0.43 2.34 16 4 C 0.05 1.56 5.17 86.30 0.45 2.01 16 5 N -0.53 -21.53 4.29 -905.33 -3.89 -25.42 16 6 C 0.17 8.00 3.68 85.56 0.32 8.31 16 7 C -0.50 -29.77 9.07 25.60 0.23 -29.54 16 8 H 0.04 2.47 7.66 -2.91 -0.02 2.44 16 9 C 0.00 0.13 5.47 84.65 0.46 0.59 16 10 N -0.95 -61.50 13.96 21.45 0.30 -61.20 16 11 Si 0.95 44.13 27.57 68.60 1.89 46.02 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 13 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 14 H -0.25 -10.44 6.41 99.48 0.64 -9.80 16 15 C 0.10 3.67 4.62 85.56 0.40 4.06 16 16 C -0.12 -3.78 4.82 -19.81 -0.10 -3.88 16 17 C -0.05 -1.03 8.98 22.26 0.20 -0.83 16 18 C -0.15 -2.91 10.03 22.32 0.22 -2.69 16 19 C 0.12 2.89 7.30 22.37 0.16 3.05 16 20 F -0.14 -3.29 17.27 44.97 0.78 -2.51 16 21 C -0.21 -6.15 10.01 22.36 0.22 -5.93 16 22 C 0.13 4.55 7.24 22.37 0.16 4.71 16 23 F -0.14 -6.71 16.43 44.97 0.74 -5.97 16 24 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.03 1.17 6.08 -2.39 -0.01 1.16 16 29 H 0.09 2.42 6.87 -2.39 -0.02 2.40 16 30 H 0.06 1.61 8.12 -2.39 -0.02 1.59 16 31 H 0.03 1.58 4.54 -2.39 -0.01 1.57 16 32 H -0.01 -0.31 7.67 -2.39 -0.02 -0.33 16 33 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 34 H 0.07 1.99 7.81 -2.39 -0.02 1.97 16 35 H 0.06 2.52 7.18 -2.39 -0.02 2.51 16 36 H 0.18 2.36 8.00 -2.92 -0.02 2.34 16 37 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 38 H 0.15 4.10 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -74.92 325.14 3.64 -71.29 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 1.00 Total: 9.42 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: 4.41 Total: -15.75 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -3.59 Total: -86.62 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -1.59 Total: -15.87 kcal Atomic # 9 Polarization: -10.00 SS G_CDS: 1.52 Total: -8.48 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.89 Total: 46.02 kcal Total: -74.92 3.64 -71.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070142971.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.154 kcal (2) G-P(sol) polarization free energy of solvation -74.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds