Wall clock time and date at job start Tue Mar 31 2020 05:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00017 * 2 1 4 4 C 1.52994 * 109.47256 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.47242 * 63.59914 * 4 3 2 6 6 C 1.46903 * 110.99766 * 200.13241 * 5 4 3 7 7 C 1.50701 * 109.47230 * 66.04713 * 6 5 4 8 8 H 1.07995 * 120.00154 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99721 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00141 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00147 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47178 * 59.99929 * 11 9 7 13 13 H 1.48498 * 109.47457 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47072 * 300.00333 * 11 9 7 15 15 C 1.46894 * 111.00040 * 76.17509 * 5 4 3 16 16 C 1.50705 * 109.47142 * 199.78661 * 15 5 4 17 17 C 1.38203 * 119.99727 * 254.76858 * 16 15 5 18 18 C 1.38433 * 119.99702 * 179.76924 * 17 16 15 19 19 F 1.35103 * 119.99976 * 180.27386 * 18 17 16 20 20 C 1.38467 * 120.00087 * 0.52692 * 18 17 16 21 21 C 1.38168 * 119.99804 * 359.72315 * 20 18 17 22 22 C 1.38431 * 119.99868 * 75.04155 * 16 15 5 23 23 F 1.35092 * 119.99990 * 359.97438 * 22 16 15 24 24 H 1.09003 * 109.47157 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47107 * 300.00075 * 1 2 3 26 26 H 1.09004 * 109.47302 * 59.99861 * 1 2 3 27 27 H 1.09003 * 109.47192 * 59.99599 * 3 2 1 28 28 H 1.09002 * 109.46862 * 299.99914 * 3 2 1 29 29 H 1.09005 * 109.46801 * 303.59998 * 4 3 2 30 30 H 1.09003 * 109.47389 * 183.59914 * 4 3 2 31 31 H 1.08999 * 109.46628 * 186.04527 * 6 5 4 32 32 H 1.08995 * 109.46934 * 306.04126 * 6 5 4 33 33 H 0.97005 * 120.00444 * 180.02562 * 10 9 7 34 34 H 1.08998 * 109.47284 * 319.78572 * 15 5 4 35 35 H 1.08995 * 109.47010 * 79.78880 * 15 5 4 36 36 H 1.07998 * 120.00345 * 0.02562 * 17 16 15 37 37 H 1.08000 * 120.00292 * 179.70367 * 20 18 17 38 38 H 1.07998 * 119.99674 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9745 0.5324 -1.2415 6 6 5.3240 -0.0286 -1.0923 7 6 5.2929 -1.1520 -0.0882 8 1 4.3637 -1.4220 0.3914 9 6 6.4510 -1.8344 0.2188 10 7 7.5826 -1.5053 -0.3649 11 14 6.4127 -3.2264 1.4638 12 1 5.4858 -4.2866 0.9926 13 1 7.7771 -3.7926 1.6154 14 1 5.9448 -2.7062 2.7737 15 6 3.9139 1.4637 -2.3758 16 6 3.8897 0.6840 -3.6652 17 6 5.0206 0.6236 -4.4574 18 6 4.9998 -0.0966 -5.6395 19 9 6.1069 -0.1602 -6.4112 20 6 3.8429 -0.7473 -6.0336 21 6 2.7108 -0.6826 -5.2441 22 6 2.7332 0.0330 -4.0589 23 9 1.6264 0.0962 -3.2869 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8530 0.5889 0.8551 30 1 3.9787 2.1784 0.0639 31 1 5.6671 -0.4101 -2.0539 32 1 6.0045 0.7493 -0.7463 33 1 8.3973 -1.9856 -0.1493 34 1 3.0109 2.0696 -2.3006 35 1 4.7893 2.1128 -2.3601 36 1 5.9216 1.1348 -4.1523 37 1 3.8253 -1.3052 -6.9582 38 1 1.8084 -1.1899 -5.5517 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071230808.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:11 Heat of formation + Delta-G solvation = -123.376592 kcal Electronic energy + Delta-G solvation = -23157.828624 eV Core-core repulsion = 19442.860653 eV Total energy + Delta-G solvation = -3714.967971 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.90767 -49.71948 -40.14987 -38.95972 -37.56239 -34.74068 -33.03623 -31.03710 -30.78479 -28.91812 -27.07420 -26.24847 -24.12368 -23.87451 -22.92607 -21.42668 -18.59942 -18.53918 -18.16370 -18.05503 -17.19900 -17.06283 -16.84101 -16.47306 -16.26344 -16.03747 -15.55471 -15.35744 -15.22054 -14.99676 -14.76015 -14.21257 -13.99298 -13.69340 -13.56294 -13.32117 -12.94035 -12.90101 -12.74743 -12.58129 -12.45508 -12.33407 -12.03961 -11.81949 -11.50588 -11.24729 -10.58893 -10.38008 -10.06921 -9.43531 -8.95822 -8.17391 -6.24899 0.01802 0.09071 1.39767 1.42751 1.50766 2.36036 2.43373 3.08934 3.15155 3.16784 3.33518 3.39495 3.64038 3.73248 4.05553 4.17309 4.25955 4.35820 4.39938 4.46266 4.61368 4.65838 4.66975 4.74382 4.80226 4.92957 4.99683 5.04220 5.05921 5.13012 5.19518 5.26932 5.33082 5.69816 5.86259 6.09805 6.33466 6.52020 6.68628 6.91374 7.43520 8.93034 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.010838 B = 0.007443 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.775040 B = 3761.004911 C = 5488.972352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.400 6.400 3 C 0.079 3.921 4 C 0.057 3.943 5 N -0.527 5.527 6 C 0.213 3.787 7 C -0.515 4.515 8 H 0.058 0.942 9 C 0.004 3.996 10 N -0.933 5.933 11 Si 0.961 3.039 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.268 1.268 15 C 0.090 3.910 16 C -0.086 4.086 17 C -0.129 4.129 18 C 0.071 3.929 19 F -0.144 7.144 20 C -0.119 4.119 21 C -0.124 4.124 22 C 0.101 3.899 23 F -0.132 7.132 24 H 0.083 0.917 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.008 0.992 32 H -0.036 1.036 33 H 0.263 0.737 34 H 0.096 0.904 35 H 0.042 0.958 36 H 0.133 0.867 37 H 0.175 0.825 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.796 6.064 -7.977 16.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.319 6.319 3 C 0.002 3.998 4 C -0.071 4.071 5 N -0.251 5.251 6 C 0.087 3.913 7 C -0.553 4.553 8 H 0.076 0.924 9 C -0.194 4.194 10 N -0.573 5.573 11 Si 0.786 3.214 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.193 1.193 15 C -0.038 4.038 16 C -0.088 4.088 17 C -0.148 4.148 18 C 0.052 3.948 19 F -0.123 7.123 20 C -0.137 4.137 21 C -0.142 4.142 22 C 0.081 3.919 23 F -0.110 7.110 24 H 0.102 0.898 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.026 0.974 32 H -0.019 1.019 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.060 0.940 36 H 0.151 0.849 37 H 0.193 0.807 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -12.826 5.480 -8.054 16.106 hybrid contribution 1.057 0.193 0.861 1.377 sum -11.769 5.673 -7.193 14.914 Atomic orbital electron populations 1.22807 0.80703 1.02919 1.00247 1.88066 1.20273 1.28273 1.95312 1.22533 0.92421 0.84720 1.00161 1.22091 0.94356 0.97316 0.93298 1.61952 1.27087 1.33065 1.03001 1.19355 0.83652 0.92804 0.95523 1.21408 0.94247 1.16552 1.23141 0.92402 1.25801 0.95043 0.99986 0.98553 1.70066 0.99767 1.42886 1.44631 0.85559 0.76994 0.79326 0.79480 1.19858 1.20778 1.19306 1.21023 1.01745 0.92896 0.88109 1.19748 0.92405 1.00034 0.96621 1.20990 0.98820 1.01043 0.93978 1.17801 0.84269 1.01658 0.91071 1.91477 1.51639 1.95085 1.74071 1.21232 0.90191 1.00030 1.02281 1.21268 1.00847 0.99478 0.92645 1.17684 0.83284 1.00043 0.90930 1.91488 1.50331 1.94623 1.74591 0.89813 0.93123 0.93791 0.91509 0.93010 0.91540 0.92888 0.97388 1.01876 0.92863 0.88617 0.94000 0.84902 0.80721 0.80809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.40 -14.38 10.63 -148.98 -1.58 -15.96 16 3 C 0.08 2.44 6.12 71.98 0.44 2.88 16 4 C 0.06 2.19 5.18 86.30 0.45 2.64 16 5 N -0.53 -22.81 4.27 -905.39 -3.87 -26.67 16 6 C 0.21 11.36 4.54 85.56 0.39 11.75 16 7 C -0.52 -29.94 8.23 25.60 0.21 -29.73 16 8 H 0.06 3.41 7.32 -2.91 -0.02 3.39 16 9 C 0.00 0.23 5.46 84.66 0.46 0.69 16 10 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 11 Si 0.96 45.84 29.54 68.60 2.03 47.87 16 12 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 13 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 14 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 15 C 0.09 3.20 4.63 85.56 0.40 3.59 16 16 C -0.09 -3.00 4.82 -19.82 -0.10 -3.10 16 17 C -0.13 -4.38 8.99 22.31 0.20 -4.18 16 18 C 0.07 2.18 7.30 22.37 0.16 2.34 16 19 F -0.14 -4.49 17.27 44.97 0.78 -3.71 16 20 C -0.12 -2.90 10.02 22.31 0.22 -2.68 16 21 C -0.12 -3.10 10.02 22.31 0.22 -2.87 16 22 C 0.10 3.20 7.24 22.37 0.16 3.36 16 23 F -0.13 -4.36 16.75 44.97 0.75 -3.61 16 24 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.04 1.01 8.14 -2.38 -0.02 1.00 16 27 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.05 1.46 6.71 -2.39 -0.02 1.45 16 29 H 0.07 2.95 6.58 -2.38 -0.02 2.93 16 30 H 0.05 1.81 7.99 -2.39 -0.02 1.79 16 31 H 0.01 0.46 6.90 -2.39 -0.02 0.45 16 32 H -0.04 -2.08 8.12 -2.39 -0.02 -2.10 16 33 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 34 H 0.10 2.92 6.42 -2.39 -0.02 2.91 16 35 H 0.04 1.47 7.80 -2.39 -0.02 1.45 16 36 H 0.13 4.57 8.00 -2.91 -0.02 4.55 16 37 H 0.18 2.98 8.06 -2.91 -0.02 2.95 16 38 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -69.02 329.45 3.92 -65.10 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 1.06 Total: 6.90 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 4.47 Total: -13.30 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -3.58 Total: -83.28 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -1.58 Total: -15.96 kcal Atomic # 9 Polarization: -8.85 SS G_CDS: 1.53 Total: -7.32 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -69.02 3.92 -65.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071230808.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.281 kcal (2) G-P(sol) polarization free energy of solvation -69.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds